TCONS_00004924 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004924
Unique NameTCONS_00004924
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2241

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004924 ID=TCONS_00004924|Name=TCONS_00004924|organism=Clytia hemisphaerica|type=transcript|length=2241bp
acctttcaatttttgcagAAGAGAATCTCAATTTATGTTTAGCTTTCGAT
TTCCCTTTCTTCTGCTTCTTCCCTCTCTTCGAATGCTGTTGTTTCGTGGC
CAACCGTTCGGTGAAACGCCCGAATATGGGTAATTTGTCGACCGCTCTCC
TTTTATGTTTTTCACCGATCGAGCGTcgttttcgaatctttctttctCCT
TTGTTGTGgaggtttcttttgttgatgtCTGGTTCATCTATTTGAAGTAG
CTCCATTAATTCGTTGGCTATGGTACCAATGGCTTCTTCGTAATCGTTTT
GTAATGGTGGTGTTGAGATATCCGATTTCTTCATCTTTCTGGCTGCAACT
TTATtggttttgttttcttctttggtCAAGTGTAACTTATGACGATCATC
CCCTTCTGTGTTTTTATTGTTGCCATTCGCCATGCCAAGCATATGGAAAT
CTGGATTGGCATAAGGTGATTGGGCACTCCTACCAATCTTATGGCGAACT
TCTGCGTTGGCTTGTGAGGAATTGTTGCCATTCATTTGATTTTGGTCATC
TTGCTTTAATGAATTGTTTGTTGGTGGAATCGATGTCCTGTTAATCATGT
GTGGTGCTCGCCCTTGCACATTGAGAACTTCAAACCACTGCAAATTGTAA
CCAGTGTTCGTCAAGGTGgttgtattttttgtttgattctGATATCCCTT
TGTATGATTGGATAGTGTTGTGTTAGTCCCGTCATGCATTGCGTGCGGGG
GTCGAACGCTGCTCCTCATTGTTGCATTATGAAGTGTTGGGAGACTAGCA
AGGTTTTCTGAGATGAGAAGTATTTGGTGTTTTGCCTTCAACTGAGGACT
GTAAAACGTCTGTGGTGTTTTACTTTGAGACTGGTTTCCCTTCATTGATA
AGGGTGAAGGTTGACCCGATGTTGATCGGCTTGGAGTCTGtttgtttgat
tttctttgttcCGATTTGTTCAGTCGATCTTtgagtttcaaaagttttct
ccgGTTGGAAATATATTTCCTCGTCTGAGGAGGCAAATTCTTGCCAGTGC
TGAGAACAGGTGGCTGATTTTGTTTCCATAGGCGATCTGGGATCCACGAA
TTCTGTTCCAGATCGTCCACTACTGGCGTGAATTCGGTGTGAATGTCATG
GAGAGATATCGGTGATGCAATCATCTCTTTGATTTGTGGCAAATTAAAAT
CTTCTTTCAACACCAATGTAGGATCCAAGATCTCTGGTAACTCTTGTCTT
TTGATGGTCGCATAAGGATCGTTTTGTTGCTCGGTGGTATTTGCGTTCGT
TATGTTCGGATCACTTCtttcattattattttgaattgCTTGGTGTAAAT
CTGTTTCTGTTCCGTTGTTTCCGTTTGTTCCGTTCTCTTGATTTCCACTT
ATTCCTGTTACATTTCTTTCTGTGACTTTGTGTGCGTCCGTTCCAACTGT
TCCGTTCGCATTGTTATCTTCGTGATTTTTGGTTCCATTGGTTGAATCAT
TGCGTTCACTAGTGTTAGTGGTGTCATTTGTGCTGTTAGTTAATTCGTTA
ACCTCGTTCTGGTTTGAAAGTGAGTCCATCTCTTCCTTTGTATCAGGACC
ATGACTTCGTTTTCCATCATCGTGCGTAGTGACAAAGAAGTCGTTCATCT
CTACTTGATCGACCAGActtttcaatttgatttttattaaGCGCAAATCA
TGTTGCGATAGATTCTCCAATGATCGCCTATGGACAAAATTGACGATGCG
ATGGATCACTTTCTGTATTTCCTTGAGGAGGTGATCTGTGTCAGCTCTGG
TGAGATTGGTGTTAGTTGAGCTAGTGGTGGAATTACCAGTACTGCTCCTC
TTGGAAAGGTCATTTGTTGGTTTGTTCACTTGGTCTTTCTTCCTCAGGTA
AAGATAGACATGAGGCCTTTTGCCAGAAAGGTCGCGAAATTGAAGACGAA
TTCTTAGATATTTGTGGTTCTGCTTTACCACATCAATCTTGTCCTCTTTA
TGTTGTTGTTTCTTCTTTGTAATCGTTTTGACAGGATGGTATTGTTTGTT
CTTCTGATGCTGGACTCTCACATTCTTGGAAGTTTTGCTTTGATGAAGTC
GTTGAGCTTTTCTCCATTGTTTTCTTGGTGCATTTCGATTGTTTTTCTGT
ACTGAAAGTATCGCATCCactaacaaaaagaaaaaaagccaGTAAAGAAG
TCTCATCTTTCGTCTTTCATTATATTGACGATCGAAAACAA
Run BLAST on NCBI

transcript from alignment at sc0000049:602056..604326-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004924 ID=TCONS_00004924|Name=TCONS_00004924|organism=Clytia hemisphaerica|type=transcript|length=2271bp|location=Sequence derived from alignment at sc0000049:602056..604326- (Clytia hemisphaerica)
ACCTTTCAATTTTTGCAGAAGAGAATCTCAATTTATGTTTAGCTTTCGAT
TTCCCTTTCTTCTGCTTCTTCCCTCTCTTCGAATGCTGTTGTTTCGTGGC
CAACCGTTCGGTGAAACGCCCGAATATGGGTAATTTGTCGACCGCTCTCC
TTTTATGTTTTTCACCGATCGAGCGTCGTTTTCGAATCTTTCTTTCTCCT
TTGTTGTGGAGGTTTCTTTTGTTGATGTCTGGTTCATCTATTTGAAGTAG
CTCCATTAATTCGTTGGCTATGGTACCAATGGCTTCTTCGTAATCGTTTT
GTAATGGTGGTGTTGAGATATCCGATTTCTTCATCTTTCTGGCTGCAACT
TTATTGGTTTTGTTTTCTTCTTTGGTCAAGTGTAACTTATGACGATCATC
CCCTTCTGTGTTTTTATTGTTGCCATTCGCCATGCCAAGCATATGGAAAT
CTGGATTGGCATAAGGTGATTGGGCACTCCTACCAATCTTATGGCGAACT
TCTGCGTTGGCTTGTGAGGAATTGTTGCCATTCATTTGATTTTGGTCATC
TTGCTTTAATGAATTGTTTGTTGGTGGAATCGATGTCCTGTTAATCATGT
GTGGTGCTCGCCCTTGCACATTGAGAACTTCAAACCACTGCAAATTGTAA
CCAGTGTTCGTCAAGGTGGTTGTATTTTTTGTTTGATTCTGATATCCCTT
TGTATGATTGGATAGTGTTGTGTTAGTCCCGTCATGCATTGCGTGCGGGG
GTCGAACGCTGCTCCTCATTGTTGCATTATGAAGTGTTGGGAGACTAGCA
AGGTTTTCTGAGATGAGAAGTATTTGGTGTTTTGCCTTCAACTGAGGACT
GTAAAACGTCTGTGGTGTTTTACTTTGAGACTGGTTTCCCTTCATTGATA
AGGGTGAAGGTTGACCCGATGTTGATCGGCTTGGAGTCTGTTTGTTTGAT
TTTCTTTGTTCCGATTTGTTCAGTCGATCTTTGAGTTTCAAAAGTTTTCT
CCGGTTGGAAATATATTTCCTCGTCTGAGGAGGCAAATTCTTGCCAGTGC
TGAGAACAGGTGGCTGATTTTGTTTCCATAGGCGATCTGGGATCCACGAA
TTCTGTTCCAGATCGTCCACTACTGGCGTGAATTCGGTGTGAATGTCATG
GAGAGATATCGGTGATGCAATCATCTCTTTGATTTGTGGCAAATTAAAAT
CTTCTTTCAACACCAATGTAGGATCCAAGATCTCTGGTAACTCTTGTCTT
TTGATGGTCGCATAAGGATCGTTTTGTTGCTCGGTGGTATTTGCGTTCGT
TATGTTCGGATCACTTCTTTCATTATTATTTTGAATTGCTTGGTGTAAAT
CTGTTTCTGTTCCGTTGTTTCCGTTTGTTCCGTTCTCTTGATTTCCACTT
ATTCCTGTTACATTTCTTTCTGTGACTTTGTGTGCGTCCGTTCCAACTGT
TCCGTTCGCATTGTTATCTTCGTGATTTTTGGTTCCATTGGTTGAATCAT
TGCGTTCACTAGTGTTAGTGGTGTCATTTGTGCTGTTAGTTAATTCGTTA
ACCTCGTTCTGGTTTGAAAGTGAGTCCATCTCTTCCTTTGTATCAGGACC
ATGACTTCGTTTTCCATCATCGTGCGTAGTGACAAAGAAGTCGTTCATCT
CTACTTGATCGACCAGACTTTTCAATTTGATTTTTATTAAGCGCAAATCA
TGTTGCGATAGATTCTCCAATGATCGCCTATGGACAAAATTGACGATGCG
ATGGATCACTTTCTGTATTTCCTTGAGGAGGTGATCTGTGTCAGCTCTGG
TGAGATTGGTGTTAGTTGAGCTAGTGGTGGAATTACCAGTACTGCTCCTC
TTGGAAAGGTCATTTGTTGGTTTGTTCACTTGGTCTTTCTTCCTCAGGTA
AAGATAGACATGAGGCCTTTTGCCAGAAAGGTCGCGAAATTGAAGACGAA
TTCTTAGATATTTGTGGTTCTGCTTTACCACATCAATCTTGTCCTCTTTA
TGTTGTTGTTTCTTCTTTGTAATCGTTTTGACATGATGGTATTGTTTGTT
CATCGTTTTGACAGGATGGTATTGTTTGTTCTTCTGATGCTGGACTCTCA
CATTCTTGGAAGTTTTGCTTTGATGAAGTCGTTGAGCTTTTCTCCATTGT
TTTCTTGGTGCATTTCGATTGTTTTTCTGTACTGAAAGTATCGCATCCAC
TAACAAAAAGAAAAAAAGCCAGTAAAGAAGTCTCATCTTTCGTCTTTCAT
TATATTGACGATCGAAAACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002787XLOC_002787Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004924-exon-sc0000049-1575043694:602295..604326TCONS_00004924-exon-sc0000049-1575043694:602295..604326Clytia hemisphaericaexon
TCONS_00004924-exon-sc0000049-1575043694:602056..602264TCONS_00004924-exon-sc0000049-1575043694:602056..602264Clytia hemisphaericaexon
TCONS_00004924-exon-sc0000049-1510915933:602295..604326TCONS_00004924-exon-sc0000049-1510915933:602295..604326Clytia hemisphaericaexon
TCONS_00004924-exon-sc0000049-1510915933:602056..602264TCONS_00004924-exon-sc0000049-1510915933:602056..602264Clytia hemisphaericaexon
TCONS_00004924-exon-sc0000049-1491911889:602295..604326TCONS_00004924-exon-sc0000049-1491911889:602295..604326Clytia hemisphaericaexon
TCONS_00004924-exon-sc0000049-1491911889:602056..602264TCONS_00004924-exon-sc0000049-1491911889:602056..602264Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:602056..604326 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0197686	0.0298852	0	0	0.0416572	0.0420292	0.0588512	0.0911209	0	0.0116279	0.0116118	0.0120589	0	0	1.73635	1.69721	0	0.0194216	0.570494	0.363821	0.0259711	0.307959	0.1989	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004924 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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