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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004904 ID=TCONS_00004904|Name=TCONS_00004904|organism=Clytia hemisphaerica|type=transcript|length=534bp TTCAAAGCAGATCCCATGAGCTTCTTCTGAGTCAAATACAAAGTTCCAGT AGATGCAATAATAGCAATACTTGTGATTAAACCAAGTTGCAGCATTGGCC AATGGAAATATTCAACTGCCATCAAATTGATTTCGAGCTCCATTTGAAAG TATTGAAAAGCTAGAAACCCTTCAGCGACCAACAATAACATTAGATATCT ATCCTTTACAATTTCCTTTGTTGTCCATAGTTTGTCCTCATTGGATATCC TTGCATTACTATTATTCTTGTTAAAATCAGAGAAAGGACTTTCCGGATCT TTGGTCAAATTGTGTAGCCCGAAATAAGAGAAGATCCACATGAATGACGT AATTGAAGCAAGAAATATGCCAATGAAATTATCTTGATTGATTTTCCACG AACCGATTTGGAAATGAATGCCATAGAAAAACAAAGGCGTGCATGGTGCG AGTGCCATACAGGTCGTCGAGATAAGTTCTTTCAACGATAGCATTTGTGC CAACTCCTTCTTCTTCTTATAAATGCGATTGAAC Run BLAST on NCBI transcript from alignment at sc0000049:204460..214520- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004904 ID=TCONS_00004904|Name=TCONS_00004904|organism=Clytia hemisphaerica|type=transcript|length=10061bp|location=Sequence derived from alignment at sc0000049:204460..214520- (Clytia hemisphaerica) TTCAAAGCAGATCCCATGAGCTTCTTCTGAGTCAAATACAAAGTTCCAGT
AGATGCAATAATAGCAATACTTGTGATTAAACCAAGTTGCAGCATTGGCC
AATGGAAATATTCAACTGCCATCAAATTGATTTCGAGCTCCATTTGAAAG
TATTGAAAAGCTAGAAACCCTTCAGCGACCAACAATAACATTAGATATCT
ATCCTTTACAATTTCCTTTGTTGTCCATAGTTTGTCCTCATTGGATATCC
TTGCATTACTATTATTCTTGTTAAAATCAGAGAAAGGACTTTCCGGATCT
TTGGTCAAATTGTGTAGCCCGAAATAAGAGAAGATCCACATGCATGATGT
AATGGAAGCAAGGAATATGCCAATGAAATTATCTTGACTGATTCTCCACG
AACCGATTTGGAAATGAATGCCATAGAAAAACAAAGGTGTGCATGGTGCG
AGTGCCATACACGTCGTCGAGATGAATGCTTTCAATGATAGCATTTGTGC
CAACTCCTTCTTCTCCTTATAAATGCGATTGAACTCTCCTGGGAAAAGAA
AAATGAAACATGAATGAAGTATTTCGTAAAACTAAATGGATGGAGTCAAT
AATTTACTTGGTATTTTAGGATGATTTTCATTCTCTCATTAGTTCTCCGG
GATTATAAGGATCCACGAACCGGCTTGACTGTTTCGCTCGGGGACTGTAT
AAACCGGTATAAGAACTCTGCAAGACTTGGTAAGAAAATATGGAGGTTTG
AACTACCATCTTAAAGGTATTATGCCAAGCGAATTTTATTTTTAAAATTT
TCCATTAAAATTAACCTATTACTGAAGCTCAAATTCCTGCTGCAATACCG
CACACAAAGCGGCCCAAAACTGAGGCATAGTTTTAACCTTATAAATTCGG
TTTTTGATACCTTTTAAAACATGTTTCTCATCAATTCGAGATTTTTTCCA
GTCGGTGCAAGCCGACGTTGATTTTTCAGGGAGCCATCAAAAATAAAGTC
GTTTATTTTTTGGTGCAGAAAGAAGTTAAAAATTCACTTAAAACTATTTT
CGACGGCAAAATTTCTGGCATATTTTGACCCTAACCCCGATGATAGAAAT
TTTCGGACCATAATCATAATCGGACCCAGTGAAATTTTAGTTTTTTCATA
CAGCCACCCCGGTGTAACCTGATAACAGCTGTTCATTATTTTCTTACGTG
CACGGTAAACCTCTGAAGGCACTTGAAAATCATACAGCTGAGGAAAATAG
TCCTCCCGCGGAAAATTTTACAACAAGAATCTTTTCGTGCGCCAGAAAGT
TAAAAACTGATACGGCGCCCTATTCGTAAACACAATCACGCAACTTTGTT
GTCGTCCCCAGTCTTTTTAGACGAACGCGGTCCTTACGATTTTGAGATAG
CATATTCCTCAGATTGTAAGTTATCAATTATTTACCTGTAACTGCAGCAC
CAATTCCAGTTGCAATACCACACACAAAGCGGCCCAAAACAGGAAGCCAG
GGCGACCAAGTCAGTGTATATGTTAGATTACCAATAATGTTAAATAACGA
TAAAGTCAATACAATCTTCCTTAAATCTCTTGTCTTATCCATTGCTCGTC
CACATATGTAGTTTGAAATAATAGCGCTGAGAAATATTGCTGCCATTGAG
CATCCATAATAAAATTTAGGATTTTCGACATTGAAAGATTTTTTATAGTA
ATATAAAGCAGAAATTGCAGTCGATGAGTACTCAAAGCAATAAAGACATC
GGTATATTATACCAATCGATACTGTTAGCTTTCGCTTTAATTTCCATGTC
AAATGCATGTTTCTAAAACACTTGTTCAACACTCTGTTCATAAACAGCCA
ACCAAAGTCATAAAATTTGAAAATAAATTGATTTCTTATTAATTACAGAG
GTTTGAACCAATTACATTAATATCATGTTACACTATCGCATTTTCCATAC
AAAAATCTTTTTTAATTGGATTTATGGAGTATATAATATAAATTGCAATA
TTGCACGTTGAAGGCGTCCTCAAGTAACGTGTTTAAATTTTAATGAACCA
GCTGCGCTGGAAGGTCGCCTGAATAGAATAGCTTGAAGAGCTTAAAAGTT
TGAAAAAAGTAAAACATGAAANCTTAATGAACTAGCTGCGCTGGAAGGTC
GCCTGAATAGAATAGCTTGAAGAGCTTAAACGTTTGAAAAAAGTAAAACA
CGAAAAGCTTAACAGTGTAACACGTGATTTGCGAATGTGCCAAATCGTTA
AAAAGCAATGTGCTTTTGAGTTGCATTAATGTCAAAATGGCTGAAGTGGA
TTTTAAGTTAATATTAGAAAAGATAAAATGAGATTGGAATCAGCCTGAAA
AATATTCTTCAGAAACAAATATGTAATATAATATTCTTTTGTCATCCCTA
AAATCTTAAAGGTTTTCAGAAAGTTATAATTTTTTTAAACTAACATTAGG
ATATAGGTGAAAATAGCTTAAATTTGTTCTGAAGGAATAAAAAAACCTTC
CAAGTTACTATAGTAGGGGGGAATTTGTTCGTTTTTTTGAGGTCGCTCGA
TTTTTTTAGTCAAAGCACTTATTATAATTTTTTGGAAAGCTAAGGGGTAG
GGGAATCAAAATAACTTGGTTGCCAAATTTTTTTCGGACCAGTCTTACTT
TTTTGAGAGCTTTCCAAAAATATACAACAGGTCTCCGTTTTCTCAAGCTA
AAATTTTCATTAATTTTTCACCCTATGATTTTTGCCTGAGATCTTCGTAT
TTGTCCGAAAATCACACCAAGGTGTCCGAAAAAAATTGCAACCAAGTTAC
TTTGATTCCCCCACCCCTTAGCTTTCCAAAAATGTATAACAAGTGCCTTG
AATATAAAAATCGAGCGATTTTACAAATTCCCCCCTACTATTAAGGACAC
ATTCAATTTATAAAGTTCGAGTTTGAAGACGGTCACTTAATCATATCATG
TTTCTTGTTTGTATAATAAACAAGAGCCGCAAAGATGCGGATAAATATTT
CCTTTACAAATGTTAAAATAATAATTGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTATTTTTTAATACGCCGTTCATTAA
CTCAAATCAAATGACTTTGGAGGTTCGGTGAAATGGTGGCCAAATTGCCG
TCCCATGTTTTGTCAGATATTCCCAAGCTGGAGCAGTTGACGGTAAGAAA
ATCTCCAAATTCATGATAAAATTTTCCTAGTTTAAAACACATGTTGCAAA
AGATCTCTAGATTCACAACTAAAGTTTTCCACGTTTTAAAATGCACGCGG
GGAAGCAAATCTCCAAGTTCAAGAAAAATTTTAATTGTACATGTGAGGTG
ATTTCAAATTATTTACATCCATATTCAATGTAGGCTGCACACATCCCCTC
TGATAAGTTTTGATATAGGGGATGCGAATCAGGCTCACAAAACCATTCCG
AACTTAGCAAAAAATCTGCTAACCAAAAAAAGAGTTGAATGATAGAGAAC
TTTGATTGACAGTTTGTCGTCTTTTGTTATCTTGAGAGTTTTGTTNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNACAATACGCTTCTGAAACGGCCGA
CGTTGCCCGATCGACAAGGAGAATAGAGCGCCGTACCGATATTTACCGCC
TCGAAAAAAGAACATCCTACTTTTTTTACCGCCGGAGCTTGATCTAAAAA
GAGACTCATTTACAAACTCACGAAATTGACCAAAACCGGCGTTAGACTTG
AAGAAGGAAGGAGAAGGAGGAGAAGGAGAAAAATTACCGTTTTAACAAAT
ATTTCCTATATAGATAGATAGGAAATATTTAAAAATTGTTGCTAGAAAGT
TTCAATAAATTATTAGTAAATTTAATAATACAGTTGAAGTAATCTTAACA
AAAGTAAAAAATTTTGGAGGCAATTTTAATATGACTGCGAGCTTGAAAAA
TTAAATTTGACGGGAATTTATTTGCCTTGAAATAGATAACATTTGGGGGA
AGAAAACAATAATCTAAGTTGTATGTTTGTTCAAGAAATTTTAAGTCAAT
ACTCGCAATGGTTACACAAAATTACTCGTCTTGGAACGGTGAATCATCAA
TCAAATCTTGCTTTAGCGTTTAGGTGATAAATGTTCTTTTGTTTCACTTC
AAATCTGCTAATTGTAGCTAAAGAAATTCATGGTATAACTTGATCTGGCA
ATTAATACATTGGTTAGGTTGCCATATGCAGTGCGTGATTGGTTGGGACA
TGCTATCAACTGTTATCATAGATTCAATTCGAGTAATTGAAACAATACAC
AGGAAAAAATTATTGATTCCTTAGCCTAGGGGTTGTTCATTTTCAGATGT
GTTTTTTTATTCGATCACATTAGTCTAGAATTTTAAGTTAGTGAAAGTAA
GGAAACTAGGGAAACCTATTTTCCAATGCTGGAAGTGCATTACCAATGTG
TTAGTGAAAACGGATTTCCACATGTGGAAAACTAATATTTTTAACGTTCT
AGTTGCCCATTCAGAATGGCATGCGGAAATCAAAAATTCCAAGTTTTTCT
AAACTGATTATGGATGAGTCGGTAAAAGAGAGATCACGAGTTTTTAAAAT
GATCACTTTCTACAAGCTAGGGAAAGGAAATATCACGAATTGTGACCTTG
CTTGCTTTATTCTATTCTTTCTCTGGATCAGGAAATGTGATTTATCGAAT
TAGGGAAATAAAATTTCCCAGAATGGGAAATTCGATTTCCCGAACGCTTT
ATTTTGAGTGTATCCTTTAACCAATTAATTAAATCAGAACTTATTTCAAA
AATTTAAACTGTCACAAATTAGAGCCTAAGTTCGGGGAATTTATTTTCAG
TTTAGGGAAAATTGATTTCCCTAACTTGTATTATGCATGCGCGAGAAAAA
ACCACAAGTGATTTTTCACTCAAAAGTGTTCGAGTCGTATGTGAAGCAAA
CCATTATAAGGGTGTATTCGATCAGTGTGTAACACAATGCTAAAGGGGAG
GCGTCCCGCCAGGGCGGCCTCATTCGTTCGCAATGGACTTGCGTCGCAAG
GGCTCAGTGGATCGGTGAGCCGGGTTTGAGGTCATTAAGTTGGCTCTCTA
GTGCAGCTTCACTGTTGTGACAAAATTGACAAAAGTGCCGGGATTCTCAA
AGTAGCGCAAGTACATGTCAGAACGAATGAGAGCTATCGAACCAATGCTC
ACAGAATGATCGAATACATTTAATTATTTCTTTCTTAATTTCGTTCTATA
AATCAGGATTTAATTCGTGAATATGGGTAACCCTATGGGGTTTTATTGGG
GTTCGCTCAAGAAAAGCACTTTTCAACAATAGGGAAATTCAACATCCCTA
GGTAGTCATAAGATCGGGAAATTTCATTTCCGTAACTAGGGAGCTGTTGC
ACCTTCCCTAGTTAGGGATTGGTTAGGGAAAAATCTAGATTTCCAGATCT
GGAAATATACATTTCCATAGCCTAGGGAATCAAAAAACTTTTCCTGTGTA
AATACTACGGAGCTAATTAGAATCTATATACCGCAAATACTATCTGATAA
GTTTTAGTAGGGGGAAATTTGTTCGTTTTTTTGAGGTCGCTCGATTTTTT
TAGTCAAAGCACTTGTTATACATTTTTGGAAAGCTAAGGGGTAGGGGAAT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTGA
GAGCTTTCCAAAAATATACAACAGGTTTCCGTTTTCTCAAGCTAAAATTT
TCACTAATTTTTCACCCTATGATTTTTGCCCGAGACTGTCGTATTTGTCA
GAAGATCACACCAAAGTGTCCGAAGCAAAATTGGCACCCAAGTTATTTTG
ATTCCCCTACCCCTTAGCTTTCCAAAAATGTATAACAAGTGCTTTGACTA
AAAAAATCGAGCGATTTTACAAATTTCCCCCTACTATTGCGTGGCGTAAT
ATAACAGAGATAAAACGGCTTATGCAAGAATTTACGCGGAAAATAATTTC
CCGATCCACCGAACATTTAATTCCGAATCGGGCGACCAAACTTTCACATT
TTTGTCTTGATGAGGAGAAACACCGAATTTAAAGGTCCCTTTCACTTCGG
AAAAGATTTGGAAATAGTTTGATGTTAAATTTGAATGATAAGGAGGTTTA
TTATCACATGATACTTTTTCTTTCAACATAGTGAAACCGATTCGACAACA
ATAACAAAATCAAAATATAAGTAATTAAACTATGGCTTTCTTAAGGAAAA
AATTGGTCACAAAATGGTGAAAATAATAAGATTTTAATTTAAGAACATTT
TTAGGCTTGAAACTCAAAAAGTTAAGAACATCCTAATGCTTCAAAAATTT
TACAACGTGTAGCCTAGCTAAATTACTCTTCAATGCCAGTACAGTTAATT
CTGAAAATAGTTTGATTCGTTCATTGCCACACATCAACAGTTGTAAGAAG
TTAAATTTGAATATAATCAAAGTTTGTTGATCACTTTGTACTTTTTCTTT
CCACATAGTAAAACCGATTCGACAACAATAACAAAATTAAAATATAAGTA
ATTAAACTATAGACTGGAATTATATACTTCAAAATATCATAAACATAACT
GGCAGTAAAAAAAGCCAAGCACGCCAAAGCTCTGGCGATGATATATCGAT
GGGATTCGACGATACTCGAGGAATGTGAAGGAGTTATGGAGAACATCAAC
CATTGACAGTAAACTGTCGATCCGAAACCCTGAACGATGTTAAAGAATAA
GGAGGTGAAGATAACTGCATGCTGCAATGGTTTATCGAACTTTGTAACAG
TACCAAATAAAATAATGGATTCTAGAACTCCAATAATTACCAAACCAACA
ACATAGAGAAAGAATATATTCAAAGCAGAACCCATGAGTTTCTTCTGAGT
CAAATACAAAGTTCCAGTAGACACAATAATAGCAATACTTGTGATTAAAC
CAAGTTGCAGCATTGGCCAATGGAAATATTCAACTGCCATCAAATTGATT
TCGAGCTCCATTTGAAAGTATTGAAAAGCTAGAAACCCTTCAGCGACCAA
CAATAACATTAGATGTCGATCCTTTAGAATGTCCTTTGTTGTCCATAGTT
TGTCATCATTGGATGGTTTTGCATTACTATTATTCTTGTTTATAGTGTTA
CAATCAGAGAAAGGACTTTCCGGATCCTTGGTCAAATTGTGTAGCCCGAA
ATAAGAGAAGATCCACATGAATGACGTAATTGAAGCAAGAAATATGCCAA
TGAAATTATCTTGATTGATTTTCCACGAACCGATTTGGAAATGAATGCCA
TAGAAAAACAAAGGCGTGCATGGTGCGAGTGCCATACAGGTCGTCGAGAT
AAGTTCTTTCAACGATAGCATTTGTGCCAACTCCTTCTTCTTCTTATAAA
TGCGATTGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00004904-exon-sc0000049-1575043694:214182..214520 | TCONS_00004904-exon-sc0000049-1575043694:214182..214520 | Clytia hemisphaerica | exon |
TCONS_00004904-exon-sc0000049-1575043694:204460..204654 | TCONS_00004904-exon-sc0000049-1575043694:204460..204654 | Clytia hemisphaerica | exon |
TCONS_00004904-exon-sc0000049-1510915933:214182..214520 | TCONS_00004904-exon-sc0000049-1510915933:214182..214520 | Clytia hemisphaerica | exon |
TCONS_00004904-exon-sc0000049-1510915933:204460..204654 | TCONS_00004904-exon-sc0000049-1510915933:204460..204654 | Clytia hemisphaerica | exon |
TCONS_00004904-exon-sc0000049-1491911889:214182..214520 | TCONS_00004904-exon-sc0000049-1491911889:214182..214520 | Clytia hemisphaerica | exon |
TCONS_00004904-exon-sc0000049-1491911889:204460..204654 | TCONS_00004904-exon-sc0000049-1491911889:204460..204654 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000049 | supercontig | sc0000049:204460..214520 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR020846 | MFS_dom |
Blast
The following BLAST results are available for this feature:
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