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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004875 ID=TCONS_00004875|Name=TCONS_00004875|organism=Clytia hemisphaerica|type=transcript|length=836bp
TTTCTTCGTGTCCCTTTAAAGTATACTATGCTTCAAAATTGTTCTATTTT
TCTATTTGATATTGCTCAAACGAACATTTGATGTGTCAGTAGTGCGGGCG
AGCGGGCTGACGACGAATGCAAACGAAACACATGGTCTAAAATCTCACTA
CGATCTCTGTTATTTCTCTCTCGCCCTTCAATATTTTTGATAGATATATT
TCAAGATGACTTACATCGAAAATTGGGAAGATTTTGCCAAAGCTGCCGAG
CAACTGTTTATTGAAAATCCATCGCAAGCACGGTTTTGCACCAAATATCG
ACATTGCGATGGGAAGTTGGTCATCAAGATGACAGATGATAAAGTTTGTT
TGAAATACCGTACAGACCAAGCGCAAGACGTGAAAAAACTGGAGAAGTTG
AATAATGTGTTAATGAGACATATGACATCCAAATGAACCAATGGCTGTAG
AGAACTGAACGAATCATTCTAAACGAGGCGAGCAGCGGGATAGTGTGAGA
TTCCCTGCAAATCATTTGACGATAGTTGCCGCGTGTTTGCTGAATCATGA
TTGGCTGGCTGGGTGTGTAGTTGGTATGAAATCACCGAAAGAACCAAACA
ATATTTTATATCTTTTCTAGGGAGTGATGGGTGTACATAATTATTTATTT
CTTTGATTTAAAATCTGCTGAAATCACgggaaaaatattcaaaattgcTT
TTGTCTAAACAAATTCTTATCCGTTGTTAAAGTCTGTTCAAGAAAAATTG
GCAGCCCagacattttttaaacattgttcTTGAGAGAAAGAATCCTCGCT
AATTCAAACatttattattcaaatttttatttcagt Run BLAST on NCBI transcript from alignment at sc0000049:546875..557984+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004875 ID=TCONS_00004875|Name=TCONS_00004875|organism=Clytia hemisphaerica|type=transcript|length=11110bp|location=Sequence derived from alignment at sc0000049:546875..557984+ (Clytia hemisphaerica)
TTTCTTCGTGTCCCTTTAAAGTATACTATGCTTCAAAATTGTTCTATTTT
TCTATTTGATATTGCTCAAACGAACATTTGATGTGTCAGTAGTGCGGGCG
AGCGGGCTGACGACGAATGCAAACGAAACACATGGTCTAAAATCTCACTA
CGATCTCTGTTATTTCTCTCTCGCCCTTCAATATTTTTGATAGATATATT
TCAAGATGACTTACATCGAAAATTGGGAAGATTTTGCCAAAGCTGCCGAG
CAACTGTTTATTGAAAATCCATCGCAAGTAGGTACTTTTTCTTATTGCTT
TTTTCCagccaacctcgttccctgcgtacNaattttaacaaatgacccct
catttttctcacaaaggtaaggactttcaaatgaaattagtttggttttc
aaaatttgaggggaaaattttgacctGTCCACCCTAACTTANTGATAGAG
CGCTAGATAATACACTGGCATTGTCTGCTTTTCCAATGCGTAAGAGAGGG
GGATCttgcatcagccaacaccagggtattctctggcgtcaataaGGGGg
caatctaaaatatgttctgttcgtGTGGCCAGACCGGACGTCGACTCACC
TTCACAAAACATTAATCTCGAGTCAGACAAGTcggaaaaatgtcagaaaa
gttttttgatagcTAAGCACTTCTTTGAATATCATTTGCCACAAGTTTTT
CTTTANttcccctcaaattttgaaaaccaaactaattttatttgaaagtc
cttacctttgtgagaaaaatgaggggtcatttgttaaaattggttaaata
gttccaaagttattccattttcaaaccacgaaaaaaccaccttttcaaGG
AATCGTCTCCCTACCACGCGCAACCAAGAAATGACCTTTGGACAGCACCA
AAAAACAATNgaacgaggaagaatttacaaaaatgaacttcaatgcatta
gtacttacctttaaatcatccaaatctgttcattcttttttttaaatcaa
ttagGAATTATCAgagaaacaagtaaaaaaaactgcatccaggtatctat
tttctttccaaagatattcatgtttttcgacgtcaaggtgaaaacgcgat
ttagcgctgaccacggcaccgNgttaaactttagcttatcgctaatgagc
tggaaatgatagctaaaaacaaatttcaccactagaaagctgaaatcctc
agctttcagatggtgtatggtgcttaaacgaaaaaatccgcaatcttatt
aaaaaaacgcaatttcttcttgtttttcaaaattccagacggcctgtaga
ttttcaaataaagcactttgtgatagattgtagcctaatcttaccctggg
tttactaaaaaaacNNNNNNNNNNNNNNNNNcaagaagaaattgcgattt
tttaacaagattgcggattttttcatttaagcagcatacaccatctgaaa
gctgaggattttagctttctagtggtgaaatttttttttagctatcattt
cgaGCTCATTatcgataagctaaagtttaacagccatcgggccgattttc
Nttcaatgtgggtcgagaattttccggtgccgtggtcagcgctaaatcgc
gttttcaccttgacgtcgaaaaacatgaatatctttggaaagaaaataga
tacatggatgcagttttttttacttgtttccctgataatttctgattggt
ttaaaaaaaagaatgaacatatttggatgatttaaaggtaggtactaatg
cattgaagttcatttttgtaaattcttcctcgttccgttCAAAAAATCNa
gatttggatgatttaaaggtaagtactaatgcattgaagttcatttttgt
aaattcttcctcgttccgcgcaaaaaatcccgacgagtgcgcaccctact
tAAGGGGTCGTCGACAttcgactttcgaattttttaacggcatttggccg
ttaaGGGGGGCAGGGGGTCAACCATGTGCCGTTAAGGGAAGGTAGAAAAT
CTCTTTAGGGGTCAACTCACCACATATCAATTCTTTTCAcctgaaaatat
tgatttttgagacgtttattccatacaaatgttactttcagttagggaaa
ccatccaggatcctgtcattctataagccagcaaaaactaaatgacactt
gtaaacttaagtttcttaccattttccattgaaaacaaccaaaaacattg
ctacttcccaaagccagagaccaaaacaaattatcttccaagattatggt
gcccttttggatctattgttaaggccaacatggaaagagttgcggaaaga
caaaggcgctcgctgcgtcgagggtggtaacgccaaaacgcccaatatga
tcttcaaacagaaggcgagttagttgccgcgcgagttacgttgTGCACTC
CACCACAGCGCATAACGAAGCGTGtttaaatgaatatcattaattataag
aatatcttatgtgcttactttcagtaaacttcgagtgcttcattaaagat
gaagaaggtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATAAAAAATGcac
tggataattttcattgtaacagtttgatcaatcatcgctgaaagtttgaa
aaagtttttccgacgcaaaagaaattgtcagccaattaaaaaagcacagt
gtgcttatacttactatgtttgctacatcgtctaggctaaaaaaagtgcg
aaaagacgccattttttattgagtgacgttatgatttttttgattgcggc
cgcgtacaggaactcgccaaatgttcctaactgactttccatatttcttt
tcctccttttatcaACTAAGATCTGCTAAAGTCACATACCTCAAGTATTC
ACTTCgctattttttagaataattttatcCAAAACAAACGACCCAATGTT
TATGTTTGTGTTCCATTTGTTTAGACGGTCTGcgcggcccttgaatttcg
cagacggtcggtcttttttctttgaaatgccgCTATTCTATTGATTATga
ttacggagataattaattcacgcaactttcagaaaaaagtttagaaatta
tctccgttatttttaaaatgtaaactgagcgAAGCCGTAGCGATATTAAA
GATGGTTGACGAAACaatgatgaaagtgaaggagaaaatttggagtttca
tcgatttttgacaattttttaactttagagaaTTTGATGGCCGCCGTTAA
CGtagaggggggagggggtcagaaccataacggccaaatgccgttaaaaa
attcgaaagtcgaatgtcgacggcccttaacccacattgagtcccgtttt
agtttttttatgtatatacccttattgaaattttcaagtcggAATTCGGC
GATTCAgtaagtaacgtaaataaagcctgggatacactgGGACAAGGTTG
GCTTTTTTCATACCTTTTTTGGtcacaaaattttgattttgcctCAAACA
TGCACCGTTGAAGCTATATACAATTTTGAATTAGCGTTATTGAAAGATAA
ATATATATTAAtcgtttttaggattttataGTTTTAGGCATACTGTATCG
AGGGGGTCAGAGTTCagcccaaaaaaatttcaaatttccagATGTGggtg
atgaaaaaaaaaattcccctgGTGGgtcgcaaatttttttcttcacatta
ttagattttttcatgatattcatgacataatgttttctacggaaagaccc
tgGTTTTTGTCAGTAGATATTTAATTTAGATAGATATCGATTTTATTGAT
TACAACCGtccccgggggggtactagggttggcgaatgaggggtatgtgc
ggacgggacctccgaaaaccaactgatttttgctgaaaaagtgaccctta
gagagactttttgaatttttttttccgatttttgaaaaaagtcataccct
tagagagactttattacaaatattttctatggaaatcaaaaaatttccta
aaaatcctgaattttccgacccttagagagactaatttaaaactttctga
tttttccaacccttagagagactttgaaaggtgaaaaaaccgaccgttac
cgtccgcacatacccatcatccatttttgccttttggtctttccgtaaaa
aacattacgtcatgaatatcatgaatattcagtttgaaaaattttttttc
ctgacagcacaaaaaaagtttcttttttgcggccatttgactttcaaaaa
taaattcaccCGGCTGATTTCCAGAAGATACCTAATTTGGAGAGTAGTAA
TCAAATTAGGAGATGCTAAGGAGTATGCTAAAAAGAAGAGCAGAAACTTT
GACCTAAATCTTTTCAGGTATTGCTTCGATCAGCATTCAGAAGactaaag
aaactttttcttagtCAAGATTTGAAccattgaccaaaatttcaagtaat
ttctcTGGCGAGTTCTCTGAAAATTAACATCCTCAATAATCTGCCATGCA
GAGactaaaattttgcaaacacAAGCCAAAATTTTTCTCCACGAAGCGGC
GCCCGCTAGGTACAGCACAAATTTCAAATTGGGACTGGCTATTTTTCGTG
CAAGAAAAAGCATTTCATATTTccatttggttgagttgcaggaggcttta
gaggcctatttcgcaactatagacgcttactaatgagcgtcccgtcagca
ccttgaactgactacccaattcccctcacattgCATGGGTTAACCCGGGC
GAAGGAATNtggatttcattttggtaaaatcgcgatcttaaaatcttttt
ttgatccagagttataaccatttaaatttcaaaacaaagttcgtcttatg
actCTTANgaatgttcacttgccaagtgaactgccgggagtgggaatcga
accctggcctcctgcacagaagccaaggtcgactaccactataccacggc
acCTTATGGTGTGGTAtgctaccttaaaggaagaaattttggcaggaatt
taatttggcggatggccaaaaaagttttttttagagggaatttaatttgg
cggatggatgaaaaaactaaatttggcgggaatttaatttggcggtcgct
taaaaatttaaccttaagatggcgtcaagacagcgaaaaaatagcaaaaa
caccttaaaagagatcatattttcaaaatgtttaatttggcgggaattta
atttggcggatggcgggaacttaatttggcggatttcagccaaatccgcc
aaattttctttccgccaaaatttcttcctttaaggtaattaGCACATTTT
GAGTGGTTTTCCCTCAGCCAAACTCGATGAAATTCAGCACAGAATCTCAC
TTGCTTATTAtttacattttgaaagtgataagATGNaactgaaaaaatca
catttaaatttacttttttatcgatatttttacagaatttaggatttaaa
gagttaaaatcaattccaaaaaaaatcctaagagacttttttagttcgat
ctattgggaacatattattgaaattattttttcaaaattcaaaagctatg
ggtgactttaacttctttaaNTCTCTggtaagtgaagaaattttggcaga
aatTTGAATTGGAGGATCAATGAAAAAgctaatttttgcaaaaatttaat
ttgacggatgACGGATTTTTAAATCCAAAATCAAGGTGAAACCATCCTAC
ACAAACACCCTATTCAACAGACCCAAGGCTGTCTTTAAATCCCTCAAAAA
ACAGGGGAGCGGTCAGTATTAAGATCTCAAATATCGCGCTTAGTGACGTT
GTGGTAACACCgggaaattatttttagtttcatcCTGTTTCATCaagtac
taaaataccaaaaaggttGCATGCAcaggaaaactttgaaaattattgGT
TTACTTAacgtatgtgtacaccttttttccgattttttgttaaaaaaatt
tttttcagtcaaagtggaagaaaagttactggatttcattttggtaaaat
cgcgatcttaaaatctttttttgatccagagttataaccatttaNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaattcttaagattttaa
ttatatcctgcccagttttttaaattcagctgaaacttttaccattagaa
agagaatattattggctttcagaaaatatatactttttatatattattat
ttattGTGTACTTTTTAtacataaaaatttgttgttctaaagatatgatc
aattaaagagaatgtgaacacataccttaataaTTCACACAATTCTTGCT
ACGTATCTTGCTATCGTATCGTATTTTTTCTCTTCAGGCACGGTTTTGCA
CCAAATATCGACATTGCGATGGGAAGTTGGTCATCAAGATGACAGATGAT
AAAGTTGTAAGTACCTTTTTAAGTTAACTTTCTGCAATATTGTATTATTG
GTTCAAAGCGTAACTTCCTTGAGCCAAAAGTACTTCAACTGGAAAagatg
aaaacttttaaaatttctactcataatacatgttttttcttttataagca
ttgcacttataagcatatctaggctcagatatagggaaaatttaagcata
tggcaagcattacttgagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttacggattttcagtattt
ccctaaatttatgctttagatttaagcatcccctcaagcatttttcagcc
ttattaagctttcgacctaagcatctccgagcctgttttcggatttttgt
atgcttataaaataaaaacatgtagatattgacgtcaaaaaggctcattt
ttccaaaaatatgaatgacgccaaaattcgcaaaaagGTTGCTAATTGAA
TCTCTCCTTCCGTTTTTCAGTGTTTGAAATACCGTACAGACCAAGCGCAA
GACGTGAAAAAACTGGAGAAGTTGAATAATGTGTTAATGAGACATATGAC
ATCCAAATGAACCAATGGCTGTAGAGAACTGAACGAATCATTCTAAACGA
GGCGAGCAGCGGGATAGTGTGAGATTCCCTGCAAATCATTTGACGATAGT
TGCCGCGTGTTTGCTGAATCATGATTGGCTGGCTGGGTGTGTAGTTGGTA
TGAAATCACCGAAAGAACCAAACAATATTTTATATCTTTTCTAGGGAGTG
ATGGGTGTACATAATTATTTATTTCTTTGATTTAAAATCTGCTGAAATCA
CgggaaaaatattcaaaattgcTTTTGTCTAAACAAATTCTTATCCGTTG
TTAAAGTCTGTTCAAGAAAAATTGGCAGCCCagacattttttaaacattg
ttcTTGAGAGAAAGAATCCTCGCTAATTCAAACatttattattcaaattt
ttatttcagt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004875-exon-sc0000049-1491911889:546875..547151 | TCONS_00004875-exon-sc0000049-1491911889:546875..547151 | Clytia hemisphaerica | exon |
| TCONS_00004875-exon-sc0000049-1510915933:546875..547151 | TCONS_00004875-exon-sc0000049-1510915933:546875..547151 | Clytia hemisphaerica | exon |
| TCONS_00004875-exon-sc0000049-1575043694:546875..547151 | TCONS_00004875-exon-sc0000049-1575043694:546875..547151 | Clytia hemisphaerica | exon |
| TCONS_00004875-exon-sc0000049-1491911889:556812..556880 | TCONS_00004875-exon-sc0000049-1491911889:556812..556880 | Clytia hemisphaerica | exon |
| TCONS_00004875-exon-sc0000049-1510915933:556812..556880 | TCONS_00004875-exon-sc0000049-1510915933:556812..556880 | Clytia hemisphaerica | exon |
| TCONS_00004875-exon-sc0000049-1575043694:556812..556880 | TCONS_00004875-exon-sc0000049-1575043694:556812..556880 | Clytia hemisphaerica | exon |
| TCONS_00004875-exon-sc0000049-1491911889:557495..557984 | TCONS_00004875-exon-sc0000049-1491911889:557495..557984 | Clytia hemisphaerica | exon |
| TCONS_00004875-exon-sc0000049-1510915933:557495..557984 | TCONS_00004875-exon-sc0000049-1510915933:557495..557984 | Clytia hemisphaerica | exon |
| TCONS_00004875-exon-sc0000049-1575043694:557495..557984 | TCONS_00004875-exon-sc0000049-1575043694:557495..557984 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000049 | supercontig | sc0000049:546875..557984 + |
Blast
BLAST of TCONS_00004875 vs. Swiss-Prot (Human)
Match: SRP09 (Signal recognition particle 9 kDa protein OS=Homo sapiens GN=SRP9 PE=1 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 4.664e-24 Identity = 42/76 (55.26%), Postives = 58/76 (76.32%), Query Frame = 2
Query: 206 MTYIENWEDFAKAAEQLFIENPSQARFCTKYRHCDGKLVIKMTDDKVCLKYRTDQAQDVKKLEKLNNVLMRHMTSK 433
M + WE+F++AAE+L++ +P +AR KYRH DG L +K+TDD VCL Y+TDQAQDVKK+EK ++ LMR M +K
Sbjct: 1 MPQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKFHSQLMRLMVAK 76
The following BLAST results are available for this feature:
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