TCONS_00004874 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00004874
Unique Name	TCONS_00004874
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1953

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000049:536287..539434+
coding sequence from alignment at sc0000049:536287..539434+

transcript sequence

>TCONS_00004874 ID=TCONS_00004874|Name=TCONS_00004874|organism=Clytia hemisphaerica|type=transcript|length=1953bp
GGATTGTTTGAACCTTCCTTAATTCTTCTACAGTTTTTGATCATCAGCCC
AAACCTTCATTTCATTCACCTTATCTTAtcttaaaacttttatttttatt
tcagtttagaACACATTTGATTTCTCAATATGCCATTGGAAAAGAAGATC
AAAACTCACTTGAGCATCGTGGTCATTGGACATGTCGATTCTGGAAAATC
TACATCCACTGGTCATCTCATCTATAAATGTGGAGGAATCGATAAAAGAG
ctatcgaaaagtttgaaaaagaagcTCAAGAAATGGGTAAAGGATCTTTC
AAATATGCTTGGGTTTTGGATAAATTGAAAGCAGAAAGAGAACGCGGTAT
CACCATCGATATTGCgctctggaaatttttctccaaCAAATATGAAATTA
CTATCATTGACGCTCCAGGACATCGAGATTTCATCAAGAATATGATCACT
GGTACATCACAAGCTGACTGTGCGGTTCTTATCGTGGCTTCGTCTACCGG
TGAATTTGAAGCTGGTATATCTAAGAATGGACAAACCCGAGAACATGCGC
TACTCGCCTACACTCTGGgCGTGAAGCAGCTGATTGTGGGCGTGAACAAG
ATCGACAACACTGAACCGCCCTACAGTGAAACAAGATTCAAAGAAATCTC
GAAAGAGATTGGTACCTACGTCAAGAAAGTCGGTTACAACCCCAAAGCCG
TTGCCATAGTTCCCATTTCTGGTTGGCATGGAGACAACATGATCGAATCC
TCGACAAATATGTCTTGGTATAAAGGTTGGACAACTGAAGGAACAACAGA
AGAGAAGAAACCATTTAAAGAAAGTGGCAAAACTTTATTGGAAGCTTTGG
ACGCCATTCAACCACCCAAACGCCCTGTTTCCAAACCACTCCGTTTACCA
TTACAAGATGTTTACAAAATCGGAGGTATTGGCACCGTTCCCGTCGGTCG
CGTCGAAACTGGTGTCATGAAGCCAGGAATGGTGGTGACTTTTGCACCTG
CAGGCTTATCAACAGAAGTGAAATCGGTAGAAATGCATCACGAATCGCTA
ACTGAAGCTGTCCCTGGTGATAATGTGGGTTTCAAcgtgaaaaatgtttc
agtaaAAGAAATCAAACGTGGTATGGTTGCTTCTGATAGCAAAAATGATC
CAGCTAAGGGCGTCGAAAACTTCACTGCTCAAGTGATCATTTTGAACCAT
CCAGGAGAAATTCATGCAGGATACCAACCTGTTCTTGATTGTCATACGGC
TCACGTCGCTTGCAAATTTGCCGTTCTCCAACAGAAAATCGATCGTCGTT
CAGGAAAAGTTTTGGAAGAAAATCCAAAGATGGTGAAATCAGGTGATGCA
GCCATGATCGAGTTAGTTCCTTCGAAACCCATGGTCGTCGAATCTTTCAG
TGATTATGCACCCCTGGGTAGATTTGCCGTTCGTGACATGCGACAAACAG
TGGCTGTCGGAGTTATCAAAGCCGTCAGTAAGAAGGAGAAAGCCGACGGA
AAATCCACCAAATCTGCCACGAAAGCCAGCAAAAAGAAATGATGTTTATT
TTCCAACAAACTACTTCATGTTGTTGTTGCATTCAATCAAAATGTTTATC
GAACAATcaaattccatagaaaacatttTCGTAGGATATCAGtcagtttt
tgagaaaagaaCGATTTTACGCGTGTTTTATTATTTCAGAATGACTTATC
TCAAAAACAGTATTTTTGTGTAGAAAATCACCATCTTTGGATTCTCTTCA
TTTTTGTGTAGAaaatggatgaaaatttctttcaaagtgTGATATCTTCT
TATTGAGTAAAGCGTTAATCATAGAATTTTGACAAGATACACCACATTCG
ACAAGAATTGTTTCCGAAGTAAAATTTTTACTGACGTCAGCCGCTAAAAA
TTGCTATTTCtgcctttttgaaattttgtttcttggCTTTGCGtataaaa
aac

Run BLAST on NCBI

protein sequence of Elongation factor 1-alpha protein

>TCONS_00004874-protein ID=TCONS_00004874-protein|Name=Elongation factor 1-alpha protein|organism=Clytia hemisphaerica|type=polypeptide|length=470bp
MPLEKKIKTHLSIVVIGHVDSGKSTSTGHLIYKCGGIDKRAIEKFEKEAQ
EMGKGSFKYAWVLDKLKAERERGITIDIALWKFFSNKYEITIIDAPGHRD
FIKNMITGTSQADCAVLIVASSTGEFEAGISKNGQTREHALLAYTLGVKQ
LIVGVNKIDNTEPPYSETRFKEISKEIGTYVKKVGYNPKAVAIVPISGWH
GDNMIESSTNMSWYKGWTTEGTTEEKKPFKESGKTLLEALDAIQPPKRPV
SKPLRLPLQDVYKIGGIGTVPVGRVETGVMKPGMVVTFAPAGLSTEVKSV
EMHHESLTEAVPGDNVGFNVKNVSVKEIKRGMVASDSKNDPAKGVENFTA
QVIILNHPGEIHAGYQPVLDCHTAHVACKFAVLQQKIDRRSGKVLEENPK
MVKSGDAAMIELVPSKPMVVESFSDYAPLGRFAVRDMRQTVAVGVIKAVS
KKEKADGKSTKSATKASKKK

Run BLAST on NCBI

transcript from alignment at sc0000049:536287..539434+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00004874 ID=TCONS_00004874|Name=TCONS_00004874|organism=Clytia hemisphaerica|type=transcript|length=3148bp|location=Sequence derived from alignment at sc0000049:536287..539434+ (Clytia hemisphaerica)
GGATTGTTTGAACCTTCCTTAATTCTTCTACAGTTTTTGATCATCAGCCC
AAACCTTCATTTCATTCACCTTATCTTAtcttaaaacttttatttttatt
tcagtttagaACACATTTGATTTCTCAATATGCCATTGGAAAAGAAGATC
AAAACTCACTTGAGCATCGTGGTCATTGGACATGTCGATTCTGGAAAATC
TACATCCACTGGTCATCTCATCTATAAATGTGGAGGAATCGATAAAAGAG
ctatcgaaaagtttgaaaaagaagcTCAAGAAATGGGTAAAGGATCTTTC
AAATATGCTTGGGTTTTGGATAAATTGAAAGCAGAAAGAGAACGCGGTAT
CACCATCGATATTGCgctctggaaatttttctccaaCAAATATGAAATTA
CTATCATTGACGCTCCAGGACATCGAGATTTCATCAAGAATATGATCACT
GGTACATCACAAGCTGACTGTGCGGTTCTTATCGTGGCTTCGTCTACCGG
TGAATTTGAAGCTGGTATATCTAAGAATGGACAAACCCGAGAACATGCGC
TACTCGCCTACACTCTGGGTAagatttttttgggaaatttgtaGAAGGAA
AAGTGTAGCCTTAAACTTTGGGCAAATGTTTCATTTAGAAATGGTTTAAT
AGTTCTCAAGCTATTCCAAAGCATGTGGAAGGGGGCTTAATTTAGCGCAT
TTCTATGTTGAATTACTTGTTCTTCGTGATTTACGTGAGTTACGTCCAAT
TAATTATCTCGGCTGATTTTTATTGGTATAATCATATTGCAAAATGAAAG
GCAAAAGTACGAGAATTGTGGttctaaaatttatgaaaagaataTTGATA
TTGAAAGTGAACAAATTCGATGTATACCCCCTTCTGAGGCAGCTCAACAA
AGAACGATTTATGTATGTAGTAAAGACCCCTGTAATTTTCGTGGAAAGTG
CGTTATTCATTTTAAAAGCctgacttaagggctctgaccatagtccaaaa
attgattttggtatttgaacataaaagttatatttcaggttccttaacac
ttttaacaaataattgcctttataaatNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNaagttatgactgtttttttaagcaaaatccagatgaaaa
attgatgaaaaaccactattttgaagatttcgagacaaagaagcatttac
aaaaattttccgcacaaatttttattgttcagttaaagatacaccatcta
ctgcgaaaaagttttcaaaatgttttttcttcgccgaaactaagctcttc
aaagttgaaatactcttcctcgcaaaagtcttcattttcttcttcatcaa
tttttttcaatgcaatttttgaattttcagattcaggaatagtttgtcta
acagaaaatgtataacgtgccatagttttgttggttacatcagtcagaaa
acacattttaaacacagcaattatgaaaaattcactatggtcagagccct
taaaccaAGTAGACAACTAATGCGCtatatttctgaattttttataattt
ttcaggCGTGAAGCAGCTGATTGTGGGCGTGAACAAGATCGACAACACTG
AACCGCCCTACAGTGAAACAAGATTCAAAGAAATCTCGAAAGAGATTGGT
ACCTACGTCAAGAAAGTCGGTTACAACCCCAAAGCCGTTGCCATAGTTCC
CATTTCTGGTTGGCATGGAGACAACATGATCGAATCCTCGACAAATATGT
CTTGGTATAAAGGTTGGACAACTGAAGGAACAACAGAAGAGAAGAAACCA
TTTAAAGAAAGTGGCAAAACTTTATTGGAAGCTTTGGACGCCATTCAACC
ACCCAAACGCCCTGTTTCCAAACCACTCCGTTTACCATTACAAGATGTTT
ACAAAATCGGAGGTATTGGCACCGTTCCCGTCGGTCGCGTCGAAACTGGT
GTCATGAAGCCAGGAATGGTGGTGACTTTTGCACCTGCAGGCTTATCAAC
AGAAGTGAAATCGGTAGAAATGCATCACGAATCGCTAACTGAAGCTGTCC
CTGGTGATAATGTGGGTTTCAAcgtgaaaaatgtttcagtaaAAGAAATC
AAACGTGGTATGGTTGCTTCTGATAGCAAAAATGATCCAGCTAAGGGCGT
CGAAAACTTCACTGCTCAAGTAAGActtcaatttttccttttccAGACCA
ATTTAAATAACATTTACATGTGCTCGAAAAAATTAGATTAAAAAAACAAC
TTCTCAATATTGCGACATGTTCATGATAACGAGTGTCACCTCTGGCATAT
GAATTTCTTTACAATCCACATAACAACACCAGTACAGTATTTAGAATTCA
AAATTGTTCTCATTTGTTCATTCATAGGTGATCATTTTGAACCATCCAGG
AGAAATTCATGCAGGATACCAACCTGTTCTTGATTGTCATACGGCTCACG
TCGCTTGCAAATTTGCCGTTCTCCAACAGAAAATCGATCGTCGTTCAGGA
AAAGTTTTGGAAGAAAATCCAAAGATGGTGAAATCAGGTGATGCAGCCAT
GATCGAGTTAGTTCCTTCGAAACCCATGGTCGTCGAATCTTTCAGTGATT
ATGCACCCCTGGGTAGATTTGCCGTTCGTGACATGCGACAAACAGTGGCT
GTCGGAGTTATCAAAGCCGTCAGTAAGAAGGAGAAAGCCGACGGAAAATC
CACCAAATCTGCCACGAAAGCCAGCAAAAAGAAATGATGTTTATTTTCCA
ACAAACTACTTCATGTTGTTGTTGCATTCAATCAAAATGTTTATCGAACA
ATcaaattccatagaaaacatttTCGTAGGATATCAGtcagtttttgaga
aaagaaCGATTTTACGCGTGTTTTATTATTTCAGAATGACTTATCTCAAA
AACAGTATTTTTGTGTAGAAAATCACCATCTTTGGATTCTCTTCATTTTT
GTGTAGAaaatggatgaaaatttctttcaaagtgTGATATCTTCTTATTG
AGTAAAGCGTTAATCATAGAATTTTGACAAGATACACCACATTCGACAAG
AATTGTTTCCGAAGTAAAATTTTTACTGACGTCAGCCGCTAAAAATTGCT
ATTTCtgcctttttgaaattttgtttcttggCTTTGCGtataaaaaac

Coding sequence (CDS) from alignment at sc0000049:536287..539434+

>TCONS_00004874 ID=TCONS_00004874|Name=TCONS_00004874|organism=Clytia hemisphaerica|type=CDS|length=4239bp|location=Sequence derived from alignment at sc0000049:536287..539434+ (Clytia hemisphaerica)
ATGCCATTGGAAAAGAAGATCAAAACTCACTTGAGCATCGTGGTCATTGG
ACATGTCGATTCTGGAAAATCTACATCCACTGGTCATCTCATCTATAAAT
GTGGAGGAATCGATAAAAGAGctatcgaaaagtttgaaaaagaagcTCAA
GAAATGGGTAAAGGATCTTTCAAATATGCTTGGGTTTTGGATAAATTGAA
AGCAGAAAGAGAACGCGGTATCACCATCGATATTGCgctctggaaatttt
tctccaaCAAATATGAAATTACTATCATTGACGCTCCAGGACATCGAGAT
TTCATCAAGAATATGATCACTGGTACATCACAAGCTGACTGTGCGGTTCT
TATCGTGGCTTCGTCTACCGGTGAATTTGAAGCTGGTATATCTAAGAATG
GACAAACCCGAGAACATGCGCTACTCGCCTACACTCTGGgCGTGAAGCAG
CTGATTGTGGGCGTGAACAAGATCGACAACACTGAACCGCCCTACAGTGA
AACAAGATTCAAAGAAATCTCGAAAGAGATTGGTACCTACGTCAAGAAAG
TCGGTTACAACCCCAAAGCCGTTGCCATAGTTCCCATTTCTGGTTGGCAT
GGAGACAACATGATCGAATCCTCGACAAATATGTCTTGGTATAAAGGTTG
GACAACTGAAGGAACAACAGAAGAGAAGAAACCATTTAAAGAAAGTGGCA
AAACTTTATTGGAAGCTTTGGACGCCATTCAACCACCCAAACGCCCTGTT
TCCAAACCACTCCGTTTACCATTACAAGATGTTTACAAAATCGGAGGTAT
TGGCACCGTTCCCGTCGGTCGCGTCGAAACTGGTGTCATGAAGCCAGGAA
TGGTGGTGACTTTTGCACCTGCAGGCTTATCAACAGAAGTGAAATCGGTA
GAAATGCATCACGAATCGCTAACTGAAGCTGTCCCTGGTGATAATGTGGG
TTTCAAcgtgaaaaatgtttcagtaaAAGAAATCAAACGTGGTATGGTTG
CTTCTGATAGCAAAAATGATCCAGCTAAGGGCGTCGAAAACTTCACTGCT
CAAGTGATCATTTTGAACCATCCAGGAGAAATTCATGCAGGATACCAACC
TGTTCTTGATTGTCATACGGCTCACGTCGCTTGCAAATTTGCCGTTCTCC
AACAGAAAATCGATCGTCGTTCAGGAAAAGTTTTGGAAGAAAATCCAAAG
ATGGTGAAATCAGGTGATGCAGCCATGATCGAGTTAGTTCCTTCGAAACC
CATGGTCGTCGAATCTTTCAGTGATTATGCACCCCTGGGTAGATTTGCCG
TTCGTGACATGCGACAAACAGTGGCTGTCGGAGTTATCAAAGCCGTCAGT
AAGAAGGAGAAAGCCGACGGAAAATCCACCAAATCTGCCACGAAAGCCAG
CAAAAAGAAATGAATGCCATTGGAAAAGAAGATCAAAACTCACTTGAGCA
TCGTGGTCATTGGACATGTCGATTCTGGAAAATCTACATCCACTGGTCAT
CTCATCTATAAATGTGGAGGAATCGATAAAAGAGctatcgaaaagtttga
aaaagaagcTCAAGAAATGGGTAAAGGATCTTTCAAATATGCTTGGGTTT
TGGATAAATTGAAAGCAGAAAGAGAACGCGGTATCACCATCGATATTGCg
ctctggaaatttttctccaaCAAATATGAAATTACTATCATTGACGCTCC
AGGACATCGAGATTTCATCAAGAATATGATCACTGGTACATCACAAGCTG
ACTGTGCGGTTCTTATCGTGGCTTCGTCTACCGGTGAATTTGAAGCTGGT
ATATCTAAGAATGGACAAACCCGAGAACATGCGCTACTCGCCTACACTCT
GGgCGTGAAGCAGCTGATTGTGGGCGTGAACAAGATCGACAACACTGAAC
CGCCCTACAGTGAAACAAGATTCAAAGAAATCTCGAAAGAGATTGGTACC
TACGTCAAGAAAGTCGGTTACAACCCCAAAGCCGTTGCCATAGTTCCCAT
TTCTGGTTGGCATGGAGACAACATGATCGAATCCTCGACAAATATGTCTT
GGTATAAAGGTTGGACAACTGAAGGAACAACAGAAGAGAAGAAACCATTT
AAAGAAAGTGGCAAAACTTTATTGGAAGCTTTGGACGCCATTCAACCACC
CAAACGCCCTGTTTCCAAACCACTCCGTTTACCATTACAAGATGTTTACA
AAATCGGAGGTATTGGCACCGTTCCCGTCGGTCGCGTCGAAACTGGTGTC
ATGAAGCCAGGAATGGTGGTGACTTTTGCACCTGCAGGCTTATCAACAGA
AGTGAAATCGGTAGAAATGCATCACGAATCGCTAACTGAAGCTGTCCCTG
GTGATAATGTGGGTTTCAAcgtgaaaaatgtttcagtaaAAGAAATCAAA
CGTGGTATGGTTGCTTCTGATAGCAAAAATGATCCAGCTAAGGGCGTCGA
AAACTTCACTGCTCAAGTGATCATTTTGAACCATCCAGGAGAAATTCATG
CAGGATACCAACCTGTTCTTGATTGTCATACGGCTCACGTCGCTTGCAAA
TTTGCCGTTCTCCAACAGAAAATCGATCGTCGTTCAGGAAAAGTTTTGGA
AGAAAATCCAAAGATGGTGAAATCAGGTGATGCAGCCATGATCGAGTTAG
TTCCTTCGAAACCCATGGTCGTCGAATCTTTCAGTGATTATGCACCCCTG
GGTAGATTTGCCGTTCGTGACATGCGACAAACAGTGGCTGTCGGAGTTAT
CAAAGCCGTCAGTAAGAAGGAGAAAGCCGACGGAAAATCCACCAAATCTG
CCACGAAAGCCAGCAAAAAGAAATGAATGCCATTGGAAAAGAAGATCAAA
ACTCACTTGAGCATCGTGGTCATTGGACATGTCGATTCTGGAAAATCTAC
ATCCACTGGTCATCTCATCTATAAATGTGGAGGAATCGATAAAAGAGcta
tcgaaaagtttgaaaaagaagcTCAAGAAATGGGTAAAGGATCTTTCAAA
TATGCTTGGGTTTTGGATAAATTGAAAGCAGAAAGAGAACGCGGTATCAC
CATCGATATTGCgctctggaaatttttctccaaCAAATATGAAATTACTA
TCATTGACGCTCCAGGACATCGAGATTTCATCAAGAATATGATCACTGGT
ACATCACAAGCTGACTGTGCGGTTCTTATCGTGGCTTCGTCTACCGGTGA
ATTTGAAGCTGGTATATCTAAGAATGGACAAACCCGAGAACATGCGCTAC
TCGCCTACACTCTGGgCGTGAAGCAGCTGATTGTGGGCGTGAACAAGATC
GACAACACTGAACCGCCCTACAGTGAAACAAGATTCAAAGAAATCTCGAA
AGAGATTGGTACCTACGTCAAGAAAGTCGGTTACAACCCCAAAGCCGTTG
CCATAGTTCCCATTTCTGGTTGGCATGGAGACAACATGATCGAATCCTCG
ACAAATATGTCTTGGTATAAAGGTTGGACAACTGAAGGAACAACAGAAGA
GAAGAAACCATTTAAAGAAAGTGGCAAAACTTTATTGGAAGCTTTGGACG
CCATTCAACCACCCAAACGCCCTGTTTCCAAACCACTCCGTTTACCATTA
CAAGATGTTTACAAAATCGGAGGTATTGGCACCGTTCCCGTCGGTCGCGT
CGAAACTGGTGTCATGAAGCCAGGAATGGTGGTGACTTTTGCACCTGCAG
GCTTATCAACAGAAGTGAAATCGGTAGAAATGCATCACGAATCGCTAACT
GAAGCTGTCCCTGGTGATAATGTGGGTTTCAAcgtgaaaaatgtttcagt
aaAAGAAATCAAACGTGGTATGGTTGCTTCTGATAGCAAAAATGATCCAG
CTAAGGGCGTCGAAAACTTCACTGCTCAAGTGATCATTTTGAACCATCCA
GGAGAAATTCATGCAGGATACCAACCTGTTCTTGATTGTCATACGGCTCA
CGTCGCTTGCAAATTTGCCGTTCTCCAACAGAAAATCGATCGTCGTTCAG
GAAAAGTTTTGGAAGAAAATCCAAAGATGGTGAAATCAGGTGATGCAGCC
ATGATCGAGTTAGTTCCTTCGAAACCCATGGTCGTCGAATCTTTCAGTGA
TTATGCACCCCTGGGTAGATTTGCCGTTCGTGACATGCGACAAACAGTGG
CTGTCGGAGTTATCAAAGCCGTCAGTAAGAAGGAGAAAGCCGACGGAAAA
TCCACCAAATCTGCCACGAAAGCCAGCAAAAAGAAATGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002760	XLOC_002760	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
Elongation factor 1-alpha protein	TCONS_00004874-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00004874-exon-sc0000049-1491911889:536287..536854	TCONS_00004874-exon-sc0000049-1491911889:536287..536854	Clytia hemisphaerica	exon
TCONS_00004874-exon-sc0000049-1510915933:536287..536854	TCONS_00004874-exon-sc0000049-1510915933:536287..536854	Clytia hemisphaerica	exon
TCONS_00004874-exon-sc0000049-1575043694:536287..536854	TCONS_00004874-exon-sc0000049-1575043694:536287..536854	Clytia hemisphaerica	exon
TCONS_00004874-exon-sc0000049-1491911889:537842..538455	TCONS_00004874-exon-sc0000049-1491911889:537842..538455	Clytia hemisphaerica	exon
TCONS_00004874-exon-sc0000049-1510915933:537842..538455	TCONS_00004874-exon-sc0000049-1510915933:537842..538455	Clytia hemisphaerica	exon
TCONS_00004874-exon-sc0000049-1575043694:537842..538455	TCONS_00004874-exon-sc0000049-1575043694:537842..538455	Clytia hemisphaerica	exon
TCONS_00004874-exon-sc0000049-1491911889:538664..539434	TCONS_00004874-exon-sc0000049-1491911889:538664..539434	Clytia hemisphaerica	exon
TCONS_00004874-exon-sc0000049-1510915933:538664..539434	TCONS_00004874-exon-sc0000049-1510915933:538664..539434	Clytia hemisphaerica	exon
TCONS_00004874-exon-sc0000049-1575043694:538664..539434	TCONS_00004874-exon-sc0000049-1575043694:538664..539434	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000049	supercontig	sc0000049:536287..539434 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
426.288	394.541	409.76	391.605	3.20819	2.69337	1.69818	1.91153	0.747064	1.53635	0.201685	0.65609	0.253478	0.0479407	0.231782	0.260712	0.240219	0.366172	0.0549266	0.148599	1.36343	0.647641	320.632	270.85	0.72436	0.33673	13.4489	22.0149	191.096	218.966

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000795	TF_GTP-bd_dom
IPR004160	Transl_elong_EFTu/EF1A_C
IPR004539	Transl_elong_EF1A_euk/arc
IPR004161	EFTu-like_2
IPR031157	G_TR_CS
IPR009001	Transl_elong_EF1A/Init_IF2_C
IPR009000	Transl_B-barrel
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0003924	GTPase activity
GO:0005525	GTP binding
GO:0003746	translation elongation factor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

Vocabulary: **Biological Process**
Term	Definition
GO:0006414	translational elongation

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006414	translational elongation
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0003746	translation elongation factor activity

Blast

[Close]

BLAST of TCONS_00004874 vs. Swiss-Prot (Human)
Match: EF1A1 (Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1)

HSP 1 Score: 732.25 bits (1889), Expect = 0.000e+0
Identity = 353/452 (78.10%), Postives = 393/452 (86.95%), Query Frame = 1

Query:  145 KIKTHLSIVVIGHVDSGKSTSTGHLIYKCGGIDKRAIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFFSNKYEITIIDAPGHRDFIKNMITGTSQADCAVLIVASSTGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKIDNTEPPYSETRFKEISKEIGTYVKKVGYNPKAVAIVPISGWHGDNMIESSTNMSWYXXXXXXXXXXXXXXXXXSGKTLLEALDAIQPPKRPVSKPLRLPLQDVYKIGGIGTVPVGRVETGVMKPGMVVTFAPAGLSTEVKSVEMHHESLTEAVPGDNVGFNVKNVSVKEIKRGMVASDSKNDPAKGVENFTAQVIILNHPGEIHAGYQPVLDCHTAHVACKFAVLQQKIDRRSGKVLEENPKMVKSGDAAMIELVPSKPMVVESFSDYAPLGRFAVRDMRQTVAVGVIKAVSKKEKADG 1500
            K KTH++IVVIGHVDSGKST+TGHLIYKCGGIDKR IEKFEKEA EMGKGSFKYAWVLDKLKAERERGITIDI+LWKF ++KY +TIIDAPGHRDFIKNMITGTSQADCAVLIVA+  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNK+D+TEPPYS+ R++EI KE+ TY+KK+GYNP  VA VPISGW+GDNM+E S NM W+     +G    +K    SG TLLEALD I PP RP  KPLRLPLQDVYKIGGIGTVPVGRVETGV+KPGMVVTFAP  ++TEVKSVEMHHE+L+EA+PGDNVGFNVKNVSVK+++RG VA DSKNDP      FTAQVIILNHPG+I AGY PVLDCHTAH+ACKFA L++KIDRRSGK LE+ PK +KSGDAA++++VP KPM VESFSDY PLGRFAVRDMRQTVAVGVIKAV KK    G
Sbjct:    3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWF-----KGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKKAAGAG 449

The following BLAST results are available for this feature:

BLAST of TCONS_00004874 vs. Swiss-Prot (Human)

BLAST of TCONS_00004874 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
EF1A1	0.000e+0	78.10	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF...	[more]

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TCONS_00004874 (transcript) - C. hemisphaerica