|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004848 ID=TCONS_00004848|Name=TCONS_00004848|organism=Clytia hemisphaerica|type=transcript|length=806bp
AATACCTTAGTTGATAGAAAACATTTGTAAGACCATGGGAATagtatttt
aaaattcaaatatatTTCTCGATTAGTATAACACATAACCTATACATAAA
TAATCCACAGTAATGATTGCGTATAGCCCATTTTTATTTGCCGGCTCTAG
GTCCAGAGGGCGGGATTTGATTCTCGTCCAATAAAAGTTCTTTGAGACGT
TCATCCAATTGTTTTGCAGAAACATCAAAACTCTGGTGATAGTCTTTACT
TTCGAAATCGATTAAGTCATCAAGATCAGCAACGATACGATTAATGATTC
GCTTTTGTGTTATTCTGccttcttcatctttatttataaggaGAGTTCTT
GACTCGATAATCCCTGCCACGAAGAGGGATAGTATAACCAATGGTAAAAC
ATTTGCCATTTTGTTCTCGATGTTCTGAATGATAGGAGCGACGGATTCTT
TAACTTGTATTGCTTGTTGTTGTGGACGTCAATTAAATCAATCTTAAAAG
CGTTGAAATTCTCAATCAAGGTACCAGGTAGTCAAGAAGCTTCAAAAAAA
AGAAGCTCGACTTAATAAATGTAGATTctattttctcttttcaaatGATG
GTATCTACAGAAAGACTTTCTTAGAAACTCAGCTCTTCTGAATTGAACCT
TTCTAaatgaatatatattttattgaCCAAAGTAGTATAGGAAGGGTGAC
GAAGAAAAGTGGTTAAAACGCGTCGATAACTCATCACTATGTTTACATAT
TCCGGAAGGATAAAACGGATTACTTTCACTGATATAAGGGGTCTGTTTAA
ATCATT Run BLAST on NCBI transcript from alignment at sc0000049:184191..185081+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004848 ID=TCONS_00004848|Name=TCONS_00004848|organism=Clytia hemisphaerica|type=transcript|length=891bp|location=Sequence derived from alignment at sc0000049:184191..185081+ (Clytia hemisphaerica)
AATACCTTAGTTGATAGAAAACATTTGTAAGACCATGGGAATagtatttt
aaaattcaaatatatTTCTCGATTAGTATAACACATAACCTATACATAAA
TAATCCACAGTAATGATTGCGTATAGCCCATTTTTATTTGCCGGCTCTAG
GTCCAGAGGGCGGGATTTGATTCTCGTCCAATAAAAGTTCTTTGAGACGT
TCATCCAATTGTTTTGCAGAAACATCAAAACTCTGGTGATAGTCTTTACT
TTCGAAATCGATTAAGTCATCAAGATCAGCAACGATACGATTAATGATTC
GCTTTTGTGTTATTCTGccttcttcatctttatttataaggaGAGTTCTT
GACTCGATAATCCCTGCCACGAAGAGGGATAGTATAACCAATGGTAAAAC
ATTTGCCATTTTGTTCTCGATGTTCTGAATGATAGGAGCGACGGATTCTT
TAACTTGTATTGCTTGTTGTTGTGGACGTCAATTAAATCAATCTTAAAAG
CGTTGAAATTCTCAATCAAGGTACCAGGTAGTCaagaagtttcaaaaaaa
agaagctCGACTTAATAAATGTagattcttttttctcttttcaaatgGNA
TCAAGGTACCAGGTAGTCAAGAAGCTTCAAAAAAAAGAAGCTCGACTTAA
TAAATGTAGATTctattttctcttttcaaatGATGGTATCTACAGAAAGA
CTTTCTTAGAAACTCAGCTCTTCTGAATTGAACCTTTCTAaatgaatata
tattttattgaCCAAAGTAGTATAGGAAGGGTGACGAAGAAAAGTGGTTA
AAACGCGTCGATAACTCATCACTATGTTTACATATTCCGGAAGGATAAAA
CGGATTACTTTCACTGATATAAGGGGTCTGTTTAAATCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004848-exon-sc0000049-1491911889:184191..184710 | TCONS_00004848-exon-sc0000049-1491911889:184191..184710 | Clytia hemisphaerica | exon |
| TCONS_00004848-exon-sc0000049-1510915933:184191..184710 | TCONS_00004848-exon-sc0000049-1510915933:184191..184710 | Clytia hemisphaerica | exon |
| TCONS_00004848-exon-sc0000049-1575043694:184191..184710 | TCONS_00004848-exon-sc0000049-1575043694:184191..184710 | Clytia hemisphaerica | exon |
| TCONS_00004848-exon-sc0000049-1491911889:184796..185081 | TCONS_00004848-exon-sc0000049-1491911889:184796..185081 | Clytia hemisphaerica | exon |
| TCONS_00004848-exon-sc0000049-1510915933:184796..185081 | TCONS_00004848-exon-sc0000049-1510915933:184796..185081 | Clytia hemisphaerica | exon |
| TCONS_00004848-exon-sc0000049-1575043694:184796..185081 | TCONS_00004848-exon-sc0000049-1575043694:184796..185081 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000049 | supercontig | sc0000049:184191..185081 + |
Blast
The following BLAST results are available for this feature:
|
