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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004838 ID=TCONS_00004838|Name=TCONS_00004838|organism=Clytia hemisphaerica|type=transcript|length=1476bpRun BLAST on NCBI transcript from alignment at sc0000049:80719..83166+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004838 ID=TCONS_00004838|Name=TCONS_00004838|organism=Clytia hemisphaerica|type=transcript|length=2448bp|location=Sequence derived from alignment at sc0000049:80719..83166+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00004838 vs. Swiss-Prot (Human)
Match: ZN570 (Zinc finger protein 570 OS=Homo sapiens GN=ZNF570 PE=2 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 5.266e-33 Identity = 62/142 (43.66%), Postives = 88/142 (61.97%), Query Frame = 2
Query: 101 GGRPLRFQCPDCDRKFHAPSHLKRHRLCHTSERPFQCHICKKGFLQAWHLGRHMTIHTGNKPFQCPECPKTFGSRFEMKTHCNYIHRGIKEHECTVCNKMFTLRSNLKVHMRKHTGEKPYQCEICLKKFGQRGHLQYHMRKH 526
G +P ++C +C + F +HL +H HT E+P++C +C+K F Q +L +H +HTG KP++C EC K F +R + H +H G K +EC VC K F+LR+ L VH R HTGE+PY+C+ C K F Q HL H R H
Sbjct: 270 GEKP--YECKECRKAFSQNAHLVQHLRVHTGEKPYECKVCRKAFSQFAYLAQHQRVHTGEKPYECIECGKAFSNRSSIAQH-QRVHTGEKPYECNVCGKAFSLRAYLTVHQRIHTGERPYECKECGKAFSQNSHLAQHQRIH 408 HSP 2 Score: 125.946 bits (315), Expect = 3.454e-31 Identity = 62/148 (41.89%), Postives = 89/148 (60.14%), Query Frame = 2
Query: 101 GGRPLRFQCPDCDRKFHAPSHLKRHRLCHTSERPFQCHICKKGFLQAWHLGRHMTIHTGNKPFQCPECPKTFGSRFEMKTHCNYIHRGIKEHECTVCNKMFTLRSNLKVHMRKHTGEKPYQCEICLKKFGQRGHLQYHMRKHEESNLT 544
G RP ++C +C + F SHL +H+ HT E+P++C C+K F Q +L +H +HTG KP++C EC K F + + H +H G K +ECTVC K F+ +L H R HTGE+PY+C+ C K F Q HL +H R H +L+
Sbjct: 382 GERP--YECKECGKAFSQNSHLAQHQRIHTGEKPYKCQECRKAFSQIAYLAQHQRVHTGEKPYECIECGKAFSNDSSLTQH-QRVHTGEKPYECTVCGKAFSYCGSLAQHQRIHTGERPYECKECKKTFRQHAHLAHHQRIHIGESLS 526 HSP 3 Score: 118.627 bits (296), Expect = 1.422e-28 Identity = 59/142 (41.55%), Postives = 85/142 (59.86%), Query Frame = 2
Query: 101 GGRPLRFQCPDCDRKFHAPSHLKRHRLCHTSERPFQCHICKKGFLQAWHLGRHMTIHTGNKPFQCPECPKTFGSRFEMKTHCNYIHRGIKEHECTVCNKMFTLRSNLKVHMRKHTGEKPYQCEICLKKFGQRGHLQYHMRKH 526
G +P ++C +C + F S+L +H+ HT E+P++C C+K F Q HL +H+ +HTG KP++C C K F S+F +H G K +EC C K F+ RS++ H R HTGEKPY+C +C K F R +L H R H
Sbjct: 242 GEKP--YKCIECGKAFSQRSNLVQHQRIHTGEKPYECKECRKAFSQNAHLVQHLRVHTGEKPYECKVCRKAF-SQFAYLAQHQRVHTGEKPYECIECGKAFSNRSSIAQHQRVHTGEKPYECNVCGKAFSLRAYLTVHQRIH 380 HSP 4 Score: 113.62 bits (283), Expect = 7.739e-27 Identity = 60/142 (42.25%), Postives = 79/142 (55.63%), Query Frame = 2
Query: 101 GGRPLRFQCPDCDRKFHAPSHLKRHRLCHTSERPFQCHICKKGFLQAWHLGRHMTIHTGNKPFQCPECPKTFGSRFEMKTHCNYIHRGIKEHECTVCNKMFTLRSNLKVHMRKHTGEKPYQCEICLKKFGQRGHLQYHMRKH 526
G +P ++C C + F ++L H+ HT ERP++C C K F Q HL +H IHTG KP++C EC K F + H +H G K +EC C K F+ S+L H R HTGEKPY+C +C K F G L H R H
Sbjct: 354 GEKP--YECNVCGKAFSLRAYLTVHQRIHTGERPYECKECGKAFSQNSHLAQHQRIHTGEKPYKCQECRKAFSQIAYLAQH-QRVHTGEKPYECIECGKAFSNDSSLTQHQRVHTGEKPYECTVCGKAFSYCGSLAQHQRIH 492 HSP 5 Score: 109.383 bits (272), Expect = 2.099e-25 Identity = 57/136 (41.91%), Postives = 75/136 (55.15%), Query Frame = 2
Query: 119 FQCPDCDRKFHAPSHLKRHRLCHTSERPFQCHICKKGFLQAWHLGRHMTIHTGNKPFQCPECPKTFGSRFEMKTHCNYIHRGIKEHECTVCNKMFTLRSNLKVHMRKHTGEKPYQCEICLKKFGQRGHLQYHMRKH 526
+C DC++ F S L H+ HT E+P++C C K F Q +L +H IHTG KP++C EC K F + H +H G K +EC VC K F+ + L H R HTGEKPY+C C K F R + H R H
Sbjct: 218 LKCNDCEKVFSQSSSLTLHQRIHTGEKPYKCIECGKAFSQRSNLVQHQRIHTGEKPYECKECRKAFSQNAHLVQHLR-VHTGEKPYECKVCRKAFSQFAYLAQHQRVHTGEKPYECIECGKAFSNRSSIAQHQRVH 352 The following BLAST results are available for this feature:
BLAST of TCONS_00004838 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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