TCONS_00004832 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004832
Unique NameTCONS_00004832
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length499

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004832 ID=TCONS_00004832|Name=TCONS_00004832|organism=Clytia hemisphaerica|type=transcript|length=499bp
NAAATAAACTATAACTTTAAATGCAACCTTTGCAGGTGCATATCGGGGAA
ACAGATTTCAGAGCAGCCTTAAATGAATTTAGTGAGTCAAGATTTTTAAT
ATTGGATGGTAATTTGTTCCAGGTGGAGACTGCTCTGAAGTCAAAGGTAT
TTACAGCAAAAACACTATCATATTTTTTATACAATAAGGTTGCTTCCCCC
TTTACCACAAAACATCCAAACCAGTGGGCAGTAATTAAAAGGTGACAAGA
TATAAGAGTTAACAACAATCTTAGTTTGATCATCAGACAGAAAGTTCCTC
AACCTACGAAGGGCCCTTAATTTTTGGTTGGATTGTTTACAAAGCTCTGT
CACGTGAGGGACAAGAGGAATTTTATCATCGATTTTGAGCCCTAGAAGTT
TAACAACCTCAACATTATTTAGAACAATATCCTTGATTTTCAAAGAGAGA
TTTTGATTGAATGTTCCCGGGtatatcagctgaaattttgatgggttag
Run BLAST on NCBI

protein sequence of TCONS_00004832-protein

>TCONS_00004832-protein ID=TCONS_00004832-protein|Name=TCONS_00004832-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
NPSKFQLIYPGTFNQNLSLKIKDIVLNNVEVVKLLGLKIDDKIPLVPHVT
ELCKQSNQKLRALRRLRNFLSDDQTKIVVNSYILSPFNYCPLVWMFCGKG
GSNLIV
Run BLAST on NCBI

transcript from alignment at sc0000048:836096..836594

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004832 ID=TCONS_00004832|Name=TCONS_00004832|organism=Clytia hemisphaerica|type=transcript|length=499bp|location=Sequence derived from alignment at sc0000048:836096..836594 (Clytia hemisphaerica)
ctaacccatcaaaatttcagctgatataCCCGGGAACATTCAATCAAAAT
CTCTCTTTGAAAATCAAGGATATTGTTCTAAATAATGTTGAGGTTGTTAA
ACTTCTAGGGCTCAAAATCGATGATAAAATTCCTCTTGTCCCTCACGTGA
CAGAGCTTTGTAAACAATCCAACCAAAAATTAAGGGCCCTTCGTAGGTTG
AGGAACTTTCTGTCTGATGATCAAACTAAGATTGTTGTTAACTCTTATAT
CTTGTCACCTTTTAATTACTGCCCACTGGTTTGGATGTTTTGTGGTAAAG
GGGGAAGCAACCTTATTGTATAAAAAATATGATAGTGTTTTTGCTGTAAA
TACCTTTGACTTCAGAGCAGTCTCCACCTGGAACAAATTACCATCCAATA
TTAAAAATCTTGACTCACTAAATTCATTTAAGGCTGCTCTGAAATCTGTT
TCCCCGATATGCACCTGCAAAGGTTGCATTTAAAGTTATAGTTTATTTN

Coding sequence (CDS) from alignment at sc0000048:836096..836594

>TCONS_00004832 ID=TCONS_00004832|Name=TCONS_00004832|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at sc0000048:836096..836594 (Clytia hemisphaerica)
aacccatcaaaatttcagctgatataCCCGGGAACATTCAATCAAAATCT
CTCTTTGAAAATCAAGGATATTGTTCTAAATAATGTTGAGGTTGTTAAAC
TTCTAGGGCTCAAAATCGATGATAAAATTCCTCTTGTCCCTCACGTGACA
GAGCTTTGTAAACAATCCAACCAAAAATTAAGGGCCCTTCGTAGGTTGAG
GAACTTTCTGTCTGATGATCAAACTAAGATTGTTGTTAACTCTTATATCT
TGTCACCTTTTAATTACTGCCCACTGGTTTGGATGTTTTGTGGTAAAGGG
GGAAGCAACCTTATTGTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002741XLOC_002741Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004832-proteinTCONS_00004832-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004832-exon-sc0000048-1491911889:836096..836594TCONS_00004832-exon-sc0000048-1491911889:836096..836594Clytia hemisphaericaexon
TCONS_00004832-exon-sc0000048-1510915933:836096..836594TCONS_00004832-exon-sc0000048-1510915933:836096..836594Clytia hemisphaericaexon
TCONS_00004832-exon-sc0000048-1575043694:836096..836594TCONS_00004832-exon-sc0000048-1575043694:836096..836594Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000048supercontigsc0000048:836096..836594 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.856359	0.596489	1.52368	1.41769	16.5985	14.0798	9.75158	11.1088	1.85564	2.5539	0.991551	1.38509	0.859294	1.9279	0.451825	0.447292	0.826542	0.470655	0.910329	0.952594	1.18282	1.55774	0.280538	0.382575	0.731068	0.538658	1.84523	0.716102	0.543138	0.830058
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004832 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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