TCONS_00004829 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004829
Unique NameTCONS_00004829
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length701

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004829 ID=TCONS_00004829|Name=TCONS_00004829|organism=Clytia hemisphaerica|type=transcript|length=701bp
aatttatgcaataatttttctggaaaaaaaacagcaaagatggtagaaaa
aacataaacagatactagcaaaatctaaaaaactCGAAACAAGCTGCACA
GTCACAGTACAGCAGTACAGTATAATTAATCNCTAAAAACTCGAAACAAG
CTGCACAGTCACAGTACAGCAGTACAGTATAATTAATGAAAGATGGCTGA
AGCTTTAACAGTTCAAGACTTGGCACAATGGGAAGAGGAATTTGTGCAAG
AACTTCTTGATGAAACTCTTTTAGATACTGAAATAACCTTTGTCAACGAC
ATTGAGATCAAAgatattattcaaaatttcttagAATTTGAGCAGGAACT
TTTTCTGGTCACTCATCATGATGATACTACTGTTGGAATGACGTTTGTCA
GTGACGATGAAGTTCCTGATATTATTCACAATTTCAAGGACGAAATCGAG
GAATGGGAAGCAGAAATTGAGGATGAACTCTTGCTGAAAACACCGTCTGA
GTTCGAAACTTTTGAGGATGTTAAAATAACTCTTATCAATAATGATGGTG
TTGctgaaattgttaaaaaggtTGAGCCTATCATTTTGAATGTAACACCA
AACCCTTCGTCTGTGTCAGCAAAGGCTAATGGAGATACAGCAGGAAAAAC
TGATGTTACTAAACTCACTCCAGCTGAAAAAAAGCCAATCGAACCCTACA
G
Run BLAST on NCBI

protein sequence of TCONS_00004829-protein

>TCONS_00004829-protein ID=TCONS_00004829-protein|Name=TCONS_00004829-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
MAEALTVQDLAQWEEEFVQELLDETLLDTEITFVNDIEIKDIIQNFLEFE
QELFLVTHHDDTTVGMTFVSDDEVPDIIHNFKDEIEEWEAEIEDELLLKT
PSEFETFEDVKITLINNDGVAEIVKKVEPIILNVTPNPSSVSAKANGDTA
GKTDVTKLTPAEKKPIEPY
Run BLAST on NCBI

transcript from alignment at sc0000048:660885..661585

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004829 ID=TCONS_00004829|Name=TCONS_00004829|organism=Clytia hemisphaerica|type=transcript|length=701bp|location=Sequence derived from alignment at sc0000048:660885..661585 (Clytia hemisphaerica)
CTGTAGGGTTCGATTGGCTTTTTTTCAGCTGGAGTGAGTTTAGTAACATC
AGTTTTTCCTGCTGTATCTCCATTAGCCTTTGCTGACACAGACGAAGGGT
TTGGTGTTACATTCAAAATGATAGGCTCAacctttttaacaatttcagCA
ACACCATCATTATTGATAAGAGTTATTTTAACATCCTCAAAAGTTTCGAA
CTCAGACGGTGTTTTCAGCAAGAGTTCATCCTCAATTTCTGCTTCCCATT
CCTCGATTTCGTCCTTGAAATTGTGAATAATATCAGGAACTTCATCGTCA
CTGACAAACGTCATTCCAACAGTAGTATCATCATGATGAGTGACCAGAAA
AAGTTCCTGCTCAAATTctaagaaattttgaataatatcTTTGATCTCAA
TGTCGTTGACAAAGGTTATTTCAGTATCTAAAAGAGTTTCATCAAGAAGT
TCTTGCACAAATTCCTCTTCCCATTGTGCCAAGTCTTGAACTGTTAAAGC
TTCAGCCATCTTTCATTAATTATACTGTACTGCTGTACTGTGACTGTGCA
GCTTGTTTCGAGTTTTTAGNGATTAATTATACTGTACTGCTGTACTGTGA
CTGTGCAGCTTGTTTCGagttttttagattttgctagtatctgtttatgt
tttttctaccatctttgctgttttttttccagaaaaattattgcataaat
t

Coding sequence (CDS) from alignment at sc0000048:660885..661585

>TCONS_00004829 ID=TCONS_00004829|Name=TCONS_00004829|organism=Clytia hemisphaerica|type=CDS|length=507bp|location=Sequence derived from alignment at sc0000048:660885..661585 (Clytia hemisphaerica)
GTAGGGTTCGATTGGCTTTTTTTCAGCTGGAGTGAGTTTAGTAACATCAG
TTTTTCCTGCTGTATCTCCATTAGCCTTTGCTGACACAGACGAAGGGTTT
GGTGTTACATTCAAAATGATAGGCTCAacctttttaacaatttcagCAAC
ACCATCATTATTGATAAGAGTTATTTTAACATCCTCAAAAGTTTCGAACT
CAGACGGTGTTTTCAGCAAGAGTTCATCCTCAATTTCTGCTTCCCATTCC
TCGATTTCGTCCTTGAAATTGTGAATAATATCAGGAACTTCATCGTCACT
GACAAACGTCATTCCAACAGTAGTATCATCATGATGAGTGACCAGAAAAA
GTTCCTGCTCAAATTctaagaaattttgaataatatcTTTGATCTCAATG
TCGTTGACAAAGGTTATTTCAGTATCTAAAAGAGTTTCATCAAGAAGTTC
TTGCACAAATTCCTCTTCCCATTGTGCCAAGTCTTGAACTGTTAAAGCTT
CAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002738XLOC_002738Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004829-proteinTCONS_00004829-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004829-exon-sc0000048-1491911889:660885..661585TCONS_00004829-exon-sc0000048-1491911889:660885..661585Clytia hemisphaericaexon
TCONS_00004829-exon-sc0000048-1510915933:660885..661585TCONS_00004829-exon-sc0000048-1510915933:660885..661585Clytia hemisphaericaexon
TCONS_00004829-exon-sc0000048-1575043694:660885..661585TCONS_00004829-exon-sc0000048-1575043694:660885..661585Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000048supercontigsc0000048:660885..661585 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0257582	0	0.0517065	0	0	0.556247	1.29707	0.139435	0.301069	0	0.308526	0.110808	0	0.081892	0.159341	0.433057	0.316024	0.0875295	0.113679	1.13814	0.736649	0.728049	0.601338	0.387102	0.699434	0.727284	0.298765	0	0.379906
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004829 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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