TCONS_00004828 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004828
Unique NameTCONS_00004828
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length380

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004828 ID=TCONS_00004828|Name=TCONS_00004828|organism=Clytia hemisphaerica|type=transcript|length=380bp
AAAAGAGCAAATGTTGTTCCTGTGTACAAAAACAAAGGGGACAAGAgcgt
ggtaaaaaattatagaccagtgtctcttctgcctatttttacaaaaatct
ttgaaaaatgcatCTTTGACTCCGTCTACATCTATTTCGAAAACAACAAT
CTTTTCACAAATTCCCAGTCTGGTTTCCGCAAGGGTGACTCTTGTGTGTC
TCAGCTGTTATCTATAACACAAAACATCCTGAATGGTTTTGATGTTGATC
CACCTCTAGATACTCGTGGAGTGTTCCTTgatatttccaaagcttttgac
agagtttggcacgatggtttaattttcaaacttaagtcatatggtGTTTC
TGGCTCCCTTCTTCTATTAATCCAGAATTT
Run BLAST on NCBI

protein sequence of TCONS_00004828-protein

>TCONS_00004828-protein ID=TCONS_00004828-protein|Name=TCONS_00004828-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
KRANVVPVYKNKGDKSVVKNYRPVSLLPIFTKIFEKCIFDSVYIYFENNN
LFTNSQSGFRKGDSCVSQLLSITQNILNGFDVDPPLDTRGVFLDISKAFD
RVWHDGLIFKLKSYGVSGSLLLLIQN
Run BLAST on NCBI

transcript from alignment at sc0000048:651877..652256

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004828 ID=TCONS_00004828|Name=TCONS_00004828|organism=Clytia hemisphaerica|type=transcript|length=380bp|location=Sequence derived from alignment at sc0000048:651877..652256 (Clytia hemisphaerica)
AAATTCTGGATTAATAGAAGAAGGGAGCCAGAAACaccatatgacttaag
tttgaaaattaaaccatcgtgccaaactctgtcaaaagctttggaaatat
cAAGGAACACTCCACGAGTATCTAGAGGTGGATCAACATCAAAACCATTC
AGGATGTTTTGTGTTATAGATAACAGCTGAGACACACAAGAGTCACCCTT
GCGGAAACCAGACTGGGAATTTGTGAAAAGATTGTTGTTTTCGAAATAGA
TGTAGACGGAGTCAAAGatgcatttttcaaagatttttgtaaaaataggc
agaagagacactggtctataattttttaccacgcTCTTGTCCCCTTTGTT
TTTGTACACAGGAACAACATTTGCTCTTTT

Coding sequence (CDS) from alignment at sc0000048:651877..652256

>TCONS_00004828 ID=TCONS_00004828|Name=TCONS_00004828|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at sc0000048:651877..652256 (Clytia hemisphaerica)
ATTCTGGATTAATAGAAGAAGGGAGCCAGAAACaccatatgacttaagtt
tgaaaattaaaccatcgtgccaaactctgtcaaaagctttggaaatatcA
AGGAACACTCCACGAGTATCTAGAGGTGGATCAACATCAAAACCATTCAG
GATGTTTTGTGTTATAGATAACAGCTGAGACACACAAGAGTCACCCTTGC
GGAAACCAGACTGGGAATTTGTGAAAAGATTGTTGTTTTCGAAATAGATG
TAGACGGAGTCAAAGatgcatttttcaaagatttttgtaaaaataggcag
aagagacactggtctataattttttaccacgcTCTTGTCCCCTTTGTTTT
TGTACACAGGAACAACATTTGCTCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002737XLOC_002737Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004828-exon-sc0000048-1491911889:651877..652256TCONS_00004828-exon-sc0000048-1491911889:651877..652256Clytia hemisphaericaexon
TCONS_00004828-exon-sc0000048-1510915933:651877..652256TCONS_00004828-exon-sc0000048-1510915933:651877..652256Clytia hemisphaericaexon
TCONS_00004828-exon-sc0000048-1575043694:651877..652256TCONS_00004828-exon-sc0000048-1575043694:651877..652256Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004828-proteinTCONS_00004828-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000048supercontigsc0000048:651877..652256 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.950364	0.707161	0	2.56324	0.74167	0	3.1459	0.104115	1.55187	0.964521	0.566594	0	0.530268	0.0916454	1.40935	1.69712	1.56499	1.23385	2.66694	0.924614	0.623803	1.95473	0	1.60257	1.75413	0.538265	1.64915	1.66799	2.3884	0.557703
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004828 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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