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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004827 ID=TCONS_00004827|Name=TCONS_00004827|organism=Clytia hemisphaerica|type=transcript|length=972bp
TGGTTATGAAATAATCGAATTATTCgaacttttttctaattcaaagaaaa
attattggtctcttgaagatcgaattagagagagtcatcTATATACAACA
AATAAGATATAATCATATAACACCTATAATACTATATAGTATTACTTACA
TTGTACGAATTAGGATAAAGGACTCTCTAGTCTATAGTTAAGAAGTCAAC
GTTTGTTCTTAGCTGCTATTAAAAAAACACTTCCGATAACTACTACCATA
AGGACAGCAAGTTCTGAGATTGTCGCTGCAATATCGCCATTGAAAACAGG
AATCAAGACACCAAGTTTCCTTGCTAAAGCTTCTACAAACTCTTGGCACG
TGTTGtgatcaataaaattgatttggtAAGGTATTTGACTTATATTCCAT
TCTTCATAATACTGATTTACTTTCGAAGGTGACACCATTATGATTTCGTC
attttttctagttttcaatAGAGTCATTGAGTCGCGCTCTTTTTTTAGAT
AGCTATCAATTTTATCTTTACCTTCATCATCTTTaccatttatttcattt
ttctgacATAGGAGAATGCCATCTTCNAGATAGCTATCAATTTCATCTTT
ACCTTCATCATCTTTACCATTTACTTCATTTTTCTGATATAGGAGAATGC
CATCTTTGTTATTAGCATCATATATATGTAGAGCTGGAAAATTCTCATCt
gaattttcatcttcatagTGTATTACTAGACTCCAATGTTTTAGAGGTCC
AGTATTCGGCATTCTGGAACCAGAACCTCTCTGTATTTTTTTGGTATGAA
GATAGATTTTGGCAGGGAATTTCCTTGCTGCCATCCCTCAGTCTAGTTAA
ATAAAGAATATTTATTAgatacaaagaataaagaaaaaataatcagccta
tttcacataacctgagatcagattgtaaTTGTTTTCtgccaccacgctga
agctttaaagggatgggtgaaa Run BLAST on NCBI protein sequence of TCONS_00004827-protein >TCONS_00004827-protein ID=TCONS_00004827-protein|Name=TCONS_00004827-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
MAARKFPAKIYLHTKKIQRGSGSRMPNTGPLKHWSLVIHYEDENSDENFP
ALHIYDANNKDGILLYQKNEVNGKDDEGKDEIDSYXEDGILLCQKNEING
KDDEGKDKIDSYLKKERDSMTLLKTRKNDEIIMVSPSKVNQYYEEWNISQ
IPYQINFIDHNTCQEFVEALARKLGVLIPVFNGDIAATISELAVLMVVVI
GSVFLIAAKNKR Run BLAST on NCBI transcript from alignment at sc0000048:641278..642249 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004827 ID=TCONS_00004827|Name=TCONS_00004827|organism=Clytia hemisphaerica|type=transcript|length=972bp|location=Sequence derived from alignment at sc0000048:641278..642249 (Clytia hemisphaerica)
tttcacccatccctttaaagcttcagcgtggtggcaGAAAACAAttacaa
tctgatctcaggttatgtgaaataggctgattattttttctttattcttt
gtatcTAATAAATATTCTTTATTTAACTAGACTGAGGGATGGCAGCAAGG
AAATTCCCTGCCAAAATCTATCTTCATACCAAAAAAATACAGAGAGGTTC
TGGTTCCAGAATGCCGAATACTGGACCTCTAAAACATTGGAGTCTAGTAA
TACActatgaagatgaaaattcaGATGAGAATTTTCCAGCTCTACATATA
TATGATGCTAATAACAAAGATGGCATTCTCCTATATCAGAAAAATGAAGT
AAATGGTAAAGATGATGAAGGTAAAGATGAAATTGATAGCTATCTNGAAG
ATGGCATTCTCCTATgtcagaaaaatgaaataaatggtAAAGATGATGAA
GGTAAAGATAAAATTGATAGCTATCTAAAAAAAGAGCGCGACTCAATGAC
TCTattgaaaactagaaaaaatGACGAAATCATAATGGTGTCACCTTCGA
AAGTAAATCAGTATTATGAAGAATGGAATATAAGTCAAATACCTTaccaa
atcaattttattgatcaCAACACGTGCCAAGAGTTTGTAGAAGCTTTAGC
AAGGAAACTTGGTGTCTTGATTCCTGTTTTCAATGGCGATATTGCAGCGA
CAATCTCAGAACTTGCTGTCCTTATGGTAGTAGTTATCGGAAGTGTTTTT
TTAATAGCAGCTAAGAACAAACGTTGACTTCTTAACTATAGACTAGAGAG
TCCTTTATCCTAATTCGTACAATGTAAGTAATACTATATAGTATTATAGG
TGTTATATGATTATATCTTATTTGTTGTATATAgatgactctctctaatt
cgatcttcaagagaccaataatttttctttgaattagaaaaaagttcGAA
TAATTCGATTATTTCATAACCA Coding sequence (CDS) from alignment at sc0000048:641278..642249 >TCONS_00004827 ID=TCONS_00004827|Name=TCONS_00004827|organism=Clytia hemisphaerica|type=CDS|length=639bp|location=Sequence derived from alignment at sc0000048:641278..642249 (Clytia hemisphaerica)
ATGGCAGCAAGGAAATTCCCTGCCAAAATCTATCTTCATACCAAAAAAAT
ACAGAGAGGTTCTGGTTCCAGAATGCCGAATACTGGACCTCTAAAACATT
GGAGTCTAGTAATACActatgaagatgaaaattcaGATGAGAATTTTCCA
GCTCTACATATATATGATGCTAATAACAAAGATGGCATTCTCCTATATCA
GAAAAATGAAGTAAATGGTAAAGATGATGAAGGTAAAGATGAAATTGATA
GCTATCTNGAAGATGGCATTCTCCTATgtcagaaaaatgaaataaatggt
AAAGATGATGAAGGTAAAGATAAAATTGATAGCTATCTAAAAAAAGAGCG
CGACTCAATGACTCTattgaaaactagaaaaaatGACGAAATCATAATGG
TGTCACCTTCGAAAGTAAATCAGTATTATGAAGAATGGAATATAAGTCAA
ATACCTTaccaaatcaattttattgatcaCAACACGTGCCAAGAGTTTGT
AGAAGCTTTAGCAAGGAAACTTGGTGTCTTGATTCCTGTTTTCAATGGCG
ATATTGCAGCGACAATCTCAGAACTTGCTGTCCTTATGGTAGTAGTTATC
GGAAGTGTTTTTTTAATAGCAGCTAAGAACAAACGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004827-exon-sc0000048-1491911889:641278..642249 | TCONS_00004827-exon-sc0000048-1491911889:641278..642249 | Clytia hemisphaerica | exon |
| TCONS_00004827-exon-sc0000048-1510915933:641278..642249 | TCONS_00004827-exon-sc0000048-1510915933:641278..642249 | Clytia hemisphaerica | exon |
| TCONS_00004827-exon-sc0000048-1575043694:641278..642249 | TCONS_00004827-exon-sc0000048-1575043694:641278..642249 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000048 | supercontig | sc0000048:641278..642249 . |
Blast
The following BLAST results are available for this feature:
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