|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004823 ID=TCONS_00004823|Name=TCONS_00004823|organism=Clytia hemisphaerica|type=transcript|length=1234bp
CGTTATTTGGtcctaaatttataaaaatttatttggaattGATAAAAACA
TACTTCAAATAAGCTGATAAGAGAGGATAGtgagaaaaatttgaaacttg
aaaagtatttgttcttcaattgaatattatgaaCACTTTTAAGGTTAAGG
ATTTTGTTAGCTTCGGCTAAGTTCTTATAAACTATGGAGACACAGATAGA
ACACCCATTaacgacaaaaacaatagcgccatcattccagccgcggcttt
ttTATACTATGATAAGACCAAGATGTTTCTGGTTCTCACTGGCATTTATG
TCATTGTTATTGAAAGAGATCACAGGAGCATTAGCAGGGTTGATTCTACA
ACTTAAATAGACTTCTACAGCTTGTTATGTTCGGTCAGGGTTAAATGACA
TCTTCCATTTACGAGCCCACTCACTTATCCTGGAAAGATCTCTATTCAGT
GCTTCAAGACTCAAAAGTTGATCCAAGACTAGCGAAAATAATGAAGCATC
ATCAGCAAAGATTTTAGGCTTGGACTCAAGATTAACTGGGAGATCATTGA
TGTAAATCAAAAAGAACAAATGACCTAGATTTGAGCCTTGAGGAACCCCA
GCATTAACCCGCTTCCACTCCGATTTTTTCCCATTTAACACAACTCTTTG
ATACCGACAAATAAGAATGAGCATGCACTATATGCAACAATTCTTTGTTG
CGCTAAATACATAGTTCATGTAATGTTTCCAGTTCGCCCAAATAGAGACA
TACACATGCGTAATTTAACGTTCTTTaaaccaaggatttattatacactg
gatattatacaagtaacagatttttgccgatttctcatgttctagctatg
tccgcagtaatgatcacagatatctgtaaagcccgaagggctagataggc
aactttaagctttctccagcaaaaaaaagtgaagcaaaatttgacttttt
aaatttcgtgtcgatggataggatctagcattttaattgttttcggagca
cgagatcaaaaaaagtaggcggcaaacgctattttgcatctctcaaacca
gtgaaatggcttgttgtcacgtgatttctttggtaggaaatcctactaaa
acttgcttcacttttcgataaaaaccgcggatctagcccttcgggcttta
cagatctgtggtaatgatattattgttcactctcttTCACCCCGTCTTTC
ACTCatgaaatgatttttcgaagcatttttatta Run BLAST on NCBI protein sequence of TCONS_00004823-protein >TCONS_00004823-protein ID=TCONS_00004823-protein|Name=TCONS_00004823-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
MLILICRYQRVVLNGKKSEWKRVNAGVPQGSNLGHLFFLIYINDLPVNLE
SKPKIFADDASLFSLVLDQLLSLEALNRDLSRISEWARKWKMSFNPDRT Run BLAST on NCBI transcript from alignment at sc0000048:612188..613421 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004823 ID=TCONS_00004823|Name=TCONS_00004823|organism=Clytia hemisphaerica|type=transcript|length=1234bp|location=Sequence derived from alignment at sc0000048:612188..613421 (Clytia hemisphaerica)
taataaaaatgcttcgaaaaatcatttcatGAGTGAAAGACGGGGTGAaa
gagagtgaacaataatatcattaccacagatctgtaaagcccgaagggct
agatccgcggtttttatcgaaaagtgaagcaagttttagtaggatttcct
accaaagaaatcacgtgacaacaagccatttcactggtttgagagatgca
aaatagcgtttgccgcctactttttttgatctcgtgctccgaaaacaatt
aaaatgctagatcctatccatcgacacgaaatttaaaaagtcaaattttg
cttcacttttttttgctggagaaagcttaaagttgcctatctagcccttc
gggctttacagatatctgtgatcattactgcggacatagctagaacatga
gaaatcggcaaaaatctgttacttgtataatatccagtgtataataaatc
cttggtttAAAGAACGTTAAATTACGCATGTGTATGTCTCTATTTGGGCG
AACTGGAAACATTACATGAACTATGTATTTAGCGCAACAAAGAATTGTTG
CATATAGTGCATGCTCATTCTTATTTGTCGGTATCAAAGAGTTGTGTTAA
ATGGGAAAAAATCGGAGTGGAAGCGGGTTAATGCTGGGGTTCCTCAAGGC
TCAAATCTAGGTCATTTGTTCTTTTTGATTTACATCAATGATCTCCCAGT
TAATCTTGAGTCCAAGCCTAAAATCTTTGCTGATGATGCTTCATTATTTT
CGCTAGTCTTGGATCAACTTTTGAGTCTTGAAGCACTGAATAGAGATCTT
TCCAGGATAAGTGAGTGGGCTCGTAAATGGAAGATGTCATTTAACCCTGA
CCGAACATAACAAGCTGTAGAAGTCTATTTAAGTTGTAGAATCAACCCTG
CTAATGCTCCTGTGATCTCTTTCAATAACAATGACATAAATGCCAGTGAG
AACCAGAAACATCTTGGTCTTATCATAGTATAaaaaagccgcggctggaa
tgatggcgctattgtttttgtcgttAATGGGTGTTCTATCTGTGTCTCCA
TAGTTTATAAGAACTTAGCCGAAGCTAACAAAATCCTTAACCTTAAAAGT
Gttcataatattcaattgaagaacaaatacttttcaagtttcaaattttt
ctcaCTATCCTCTCTTATCAGCTTATTTGAAGTATGTTTTTATCaattcc
aaataaatttttataaatttaggaCCAAATAACG Coding sequence (CDS) from alignment at sc0000048:612188..613421 >TCONS_00004823 ID=TCONS_00004823|Name=TCONS_00004823|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at sc0000048:612188..613421 (Clytia hemisphaerica)
ATGCTCATTCTTATTTGTCGGTATCAAAGAGTTGTGTTAAATGGGAAAAA
ATCGGAGTGGAAGCGGGTTAATGCTGGGGTTCCTCAAGGCTCAAATCTAG
GTCATTTGTTCTTTTTGATTTACATCAATGATCTCCCAGTTAATCTTGAG
TCCAAGCCTAAAATCTTTGCTGATGATGCTTCATTATTTTCGCTAGTCTT
GGATCAACTTTTGAGTCTTGAAGCACTGAATAGAGATCTTTCCAGGATAA
GTGAGTGGGCTCGTAAATGGAAGATGTCATTTAACCCTGACCGAACATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004823-exon-sc0000048-1491911889:612188..613421 | TCONS_00004823-exon-sc0000048-1491911889:612188..613421 | Clytia hemisphaerica | exon |
| TCONS_00004823-exon-sc0000048-1510915933:612188..613421 | TCONS_00004823-exon-sc0000048-1510915933:612188..613421 | Clytia hemisphaerica | exon |
| TCONS_00004823-exon-sc0000048-1575043694:612188..613421 | TCONS_00004823-exon-sc0000048-1575043694:612188..613421 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000048 | supercontig | sc0000048:612188..613421 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
|
