TCONS_00004821 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004821
Unique NameTCONS_00004821
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length456

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004821 ID=TCONS_00004821|Name=TCONS_00004821|organism=Clytia hemisphaerica|type=transcript|length=456bp
GAATTAAAATCATTAAAGGATAACAGAGCCCaaagtgaaattttccagat
ttcTTTGAATGAAATCGAGACTTTCTGCCATGCGTGGAATCAAAAGAGAT
ATCCTTACATTATACCAGATAGCACTTGTCAGAGGTTTGTTGATTGTTTG
GCAAAGAAGTTGAATGTGAATTTGGATGAATTTTGGAACCTAAATAATAC
TCTTACTGCATTGGCTTTAGGAGCTGGATTACTATGGACCTTTATCAGCG
GAAGATAATCCCTACGAAAAGAGAAGTTTTCATTCTTGACATGTCATAGA
CATTCGCCGTTTTTTGATTTTCGAAACAACAAGAGCCTTATTAGTAACCc
agggtactaggtttgcgagatagctgtaatgtctgaaccaaagttcaaaa
atcgaccccttagagagactgaattttgaaaattttgtctaatttttgac
tttttg
Run BLAST on NCBI

transcript from alignment at sc0000048:585074..585529

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004821 ID=TCONS_00004821|Name=TCONS_00004821|organism=Clytia hemisphaerica|type=transcript|length=456bp|location=Sequence derived from alignment at sc0000048:585074..585529 (Clytia hemisphaerica)
caaaaagtcaaaaattagacaaaattttcaaaattcagtctctctaaggg
gtcgatttttgaactttggttcagacattacagctatctcgcaaacctag
taccctgGGTTACTAATAAGGCTCTTGTTGTTTCGAAAATCAAAAAACGG
CGAATGTCTATGACATGTCAAGAATGAAAACTTCTCTTTTCGTAGGGATT
ATCTTCCGCTGATAAAGGTCCATAGTAATCCAGCTCCTAAAGCCAATGCA
GTAAGAGTATTATTTAGGTTCCAAAATTCATCCAAATTCACATTCAACTT
CTTTGCCAAACAATCAACAAACCTCTGACAAGTGCTATCTGGTATAATGT
AAGGATATCTCTTTTGATTCCACGCATGGCAGAAAGTCTCGATTTCATTC
AAAgaaatctggaaaatttcactttGGGCTCTGTTATCCTTTAATGATTT
TAATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002730XLOC_002730Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004821-exon-sc0000048-1491911889:585074..585529TCONS_00004821-exon-sc0000048-1491911889:585074..585529Clytia hemisphaericaexon
TCONS_00004821-exon-sc0000048-1510915933:585074..585529TCONS_00004821-exon-sc0000048-1510915933:585074..585529Clytia hemisphaericaexon
TCONS_00004821-exon-sc0000048-1575043694:585074..585529TCONS_00004821-exon-sc0000048-1575043694:585074..585529Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000048supercontigsc0000048:585074..585529 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.143635	0	0.0813152	0	1.35589	0.918383	0.923325	1.38305	0.242076	3.4083	0	0.860939	0.955269	0.833327	1.46809	1.26039	3.35986	4.31021	4.8721	3.67484	0	0.541903	2.14095	3.4936	1.47509	1.01413	7.4116	8.57583	3.18846	1.29942
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004821 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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