TCONS_00004818 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004818
Unique NameTCONS_00004818
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length634

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004818 ID=TCONS_00004818|Name=TCONS_00004818|organism=Clytia hemisphaerica|type=transcript|length=634bp
TCATTCGCACCTGAAACATGGAAAAAAGGCACATTGAAAAACTTGATTAA
AAGGGCATTCACTATTTGTAATCAACCGTATTTTTTAAATTCGGAGTTAC
AGCACATTGAATTAGTGTTTACAACCATTAATGGATACCCAGTTGGCCTC
ATAAAACGATTTATCAAAGAAGTACGCAACGACCATGAAAATCAACAACC
ACCGCAACCAATGACAGATACAACAGAGACCAACAAAGAAAATCTACCAG
TTACCAGTAAAGTTAAGATTTACTTACCATACGCAGGAAAACAAGGAGAG
TTGATTACCAATGAACTTAAGAAAACTGTTAATAAAATCTTTGATAAAAA
GTTAGTGACGCAAGTCACatttaaatcaaagaaattgagTTCTTGCTTTA
ATGTCAAGGACACAAACCAAACAAAACACAATCATAACGTAGTTTATAAA
GTTAAATGTCCTGATTGCCCGGCCACTTACATTGGGGAAGCTGGGAGACG
CCTACAGGAACGCGTTAACGACCATGGAGGAAGAGATAAATATAGTCACG
TACTTAAACACTCCATAGAGCGCGGACACAATAAAGTCAATATAGAAAAC
TTTTCTCTCTTGggaaagaatttcaaaactgaAG
Run BLAST on NCBI

protein sequence of TCONS_00004818-protein

>TCONS_00004818-protein ID=TCONS_00004818-protein|Name=TCONS_00004818-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
SFAPETWKKGTLKNLIKRAFTICNQPYFLNSELQHIELVFTTINGYPVGL
IKRFIKEVRNDHENQQPPQPMTDTTETNKENLPVTSKVKIYLPYAGKQGE
LITNELKKTVNKIFDKKLVTQVTFKSKKLSSCFNVKDTNQTKHNHNVVYK
VKCPDCPATYIGEAGRRLQERVNDHGGRDKYSHVLKHSIERGHNKVNIEN
FSLLGKNFKTE
Run BLAST on NCBI

transcript from alignment at sc0000048:509575..510208

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004818 ID=TCONS_00004818|Name=TCONS_00004818|organism=Clytia hemisphaerica|type=transcript|length=634bp|location=Sequence derived from alignment at sc0000048:509575..510208 (Clytia hemisphaerica)
CTtcagttttgaaattctttccCAAGAGAGAAAAGTTTTCTATATTGACT
TTATTGTGTCCGCGCTCTATGGAGTGTTTAAGTACGTGACTATATTTATC
TCTTCCTCCATGGTCGTTAACGCGTTCCTGTAGGCGTCTCCCAGCTTCCC
CAATGTAAGTGGCCGGGCAATCAGGACATTTAACTTTATAAACTACGTTA
TGATTGTGTTTTGTTTGGTTTGTGTCCTTGACATTAAAGCAAGAActcaa
tttctttgatttaaatGTGACTTGCGTCACTAACTTTTTATCAAAGATTT
TATTAACAGTTTTCTTAAGTTCATTGGTAATCAACTCTCCTTGTTTTCCT
GCGTATGGTAAGTAAATCTTAACTTTACTGGTAACTGGTAGATTTTCTTT
GTTGGTCTCTGTTGTATCTGTCATTGGTTGCGGTGGTTGTTGATTTTCAT
GGTCGTTGCGTACTTCTTTGATAAATCGTTTTATGAGGCCAACTGGGTAT
CCATTAATGGTTGTAAACACTAATTCAATGTGCTGTAACTCCGAATTTAA
AAAATACGGTTGATTACAAATAGTGAATGCCCTTTTAATCAAGTTTTTCA
ATGTGCCTTTTTTCCATGTTTCAGGTGCGAATGA

Coding sequence (CDS) from alignment at sc0000048:509575..510208

>TCONS_00004818 ID=TCONS_00004818|Name=TCONS_00004818|organism=Clytia hemisphaerica|type=CDS|length=633bp|location=Sequence derived from alignment at sc0000048:509575..510208 (Clytia hemisphaerica)
TtcagttttgaaattctttccCAAGAGAGAAAAGTTTTCTATATTGACTT
TATTGTGTCCGCGCTCTATGGAGTGTTTAAGTACGTGACTATATTTATCT
CTTCCTCCATGGTCGTTAACGCGTTCCTGTAGGCGTCTCCCAGCTTCCCC
AATGTAAGTGGCCGGGCAATCAGGACATTTAACTTTATAAACTACGTTAT
GATTGTGTTTTGTTTGGTTTGTGTCCTTGACATTAAAGCAAGAActcaat
ttctttgatttaaatGTGACTTGCGTCACTAACTTTTTATCAAAGATTTT
ATTAACAGTTTTCTTAAGTTCATTGGTAATCAACTCTCCTTGTTTTCCTG
CGTATGGTAAGTAAATCTTAACTTTACTGGTAACTGGTAGATTTTCTTTG
TTGGTCTCTGTTGTATCTGTCATTGGTTGCGGTGGTTGTTGATTTTCATG
GTCGTTGCGTACTTCTTTGATAAATCGTTTTATGAGGCCAACTGGGTATC
CATTAATGGTTGTAAACACTAATTCAATGTGCTGTAACTCCGAATTTAAA
AAATACGGTTGATTACAAATAGTGAATGCCCTTTTAATCAAGTTTTTCAA
TGTGCCTTTTTTCCATGTTTCAGGTGCGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002727XLOC_002727Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004818-exon-sc0000048-1491911889:509575..510208TCONS_00004818-exon-sc0000048-1491911889:509575..510208Clytia hemisphaericaexon
TCONS_00004818-exon-sc0000048-1510915933:509575..510208TCONS_00004818-exon-sc0000048-1510915933:509575..510208Clytia hemisphaericaexon
TCONS_00004818-exon-sc0000048-1575043694:509575..510208TCONS_00004818-exon-sc0000048-1575043694:509575..510208Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004818-proteinTCONS_00004818-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000048supercontigsc0000048:509575..510208 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.166954	0.162807	0.283551	0.18494	2.54199	0.944747	0.505137	1.0546	0.301355	0.328235	0	0.400801	3.3921	2.21007	0.29333	0.444958	0.27402	0.690952	0.478402	0.729527	0.107913	0.236206	0.379759	0.469785	0.358301	0.479696	0	0.366476	0	0.188798
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000305GIY-YIG_SF
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004818 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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