TCONS_00004812 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004812
Unique NameTCONS_00004812
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length519

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004812 ID=TCONS_00004812|Name=TCONS_00004812|organism=Clytia hemisphaerica|type=transcript|length=519bp
CTTTTTAGTTTTACACAATCAACCCCATTGAAGAGCTCATGTTCAGAAAC
CTCATGGAAGTTTAGAAAATGTTGGActccatcaaaatcatcaaaataat
tttagttctGACGTAATTATTGCCATTTTCAAGCGTTTCCAGTGTTTGAA
GATGTAACAAAATTAGGCCCTATAAAGTTTAAGGCTGAAGATGTCGGCTT
AAAACGTCATAATTCAAGAGCACAAAAAAGTGGGATTTTCCCGAAAAAAG
TTCTCCGTAGAAGTGAATGCCTCTTAGTTTTAGCAGTTTTGTGTGCATTG
TTTCTATCAACCTGACTTGGATTAACATTTTTCCCAAGGATTTTTGtgtc
tttgttgtttttgtgtCTTTAACAAGAAAgttttcgtttcttttttattt
acacccccttctcacagatccactgggaccccttcccactggaaaaattg
tccaaaatatcgtccccggggGAAAATTATCGTCCAATTTTtgcccccac
tgaaaataatcaaataaac
Run BLAST on NCBI

transcript from alignment at sc0000048:225516..226034

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004812 ID=TCONS_00004812|Name=TCONS_00004812|organism=Clytia hemisphaerica|type=transcript|length=519bp|location=Sequence derived from alignment at sc0000048:225516..226034 (Clytia hemisphaerica)
gtttatttgattattttcagtgggggcaAAAATTGGACGATAATTTTCcc
ccggggacgatattttggacaatttttccagtgggaaggggtcccagtgg
atctgtgagaagggggtgtaaataaaaaagaaacgaaaacTTTCTTGTTA
AAGacacaaaaacaacaaagacaCAAAAATCCTTGGGAAAAATGTTAATC
CAAGTCAGGTTGATAGAAACAATGCACACAAAACTGCTAAAACTAAGAGG
CATTCACTTCTACGGAGAACTTTTTTCGGGAAAATCCCACTTTTTTGTGC
TCTTGAATTATGACGTTTTAAGCCGACATCTTCAGCCTTAAACTTTATAG
GGCCTAATTTTGTTACATCTTCAAACACTGGAAACGCTTGAAAATGGCAA
TAATTACGTCagaactaaaattattttgatgattttgatggagTCCAACA
TTTTCTAAACTTCCATGAGGTTTCTGAACATGAGCTCTTCAATGGGGTTG
ATTGTGTAAAACTAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002721XLOC_002721Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004812-exon-sc0000048-1491911889:225516..226034TCONS_00004812-exon-sc0000048-1491911889:225516..226034Clytia hemisphaericaexon
TCONS_00004812-exon-sc0000048-1510915933:225516..226034TCONS_00004812-exon-sc0000048-1510915933:225516..226034Clytia hemisphaericaexon
TCONS_00004812-exon-sc0000048-1575043694:225516..226034TCONS_00004812-exon-sc0000048-1575043694:225516..226034Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000048supercontigsc0000048:225516..226034 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.176904	0	1.03244	0.571192	0.154335	0.521123	0.667575	0.354147	0.29461	0.138033	0.115947	0.434497	0.31509	0.239543	0	0.222819	0.289439	0.281934	0.246853	0.25461	0	1.12518	0.789643	0.129688	0	0.111092	2.8548	3.66621	1.65132	1.45879
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004812 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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