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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004808 ID=TCONS_00004808|Name=TCONS_00004808|organism=Clytia hemisphaerica|type=transcript|length=1859bp
CAAAAACAAACTTTCTCTTTTATTCTTGACGTTGCTCCACTCTGGAATAA
ACATTTTAATGGAAGCAGATACTCTGTCTATAACGGAAATTTTTTACGAT
TGCAAATGCTAGCATGGGTGCATTCATGTTCGTATTGGTTTTTACCTCGA
tctgattttgaaattatttcttAGTAAATCAAGAAATAATCGCAATATTT
TCTAAAGGATAAATATCATGAAGCATTTGTTATCCATTTTGCTTATCAGT
CTAACGACAGCGACAATGGTTTATATTTGTGTTTGGTCATATTTTTCCGA
AACACTTAcaattcaaaaaagattttacatTGATGACGAGAACTATGAAG
ATTTTGATGTCATAAGTGTTGATAATCAGGAAAACAAGACATTGAACATT
GCTTCTTTGAGTATTAtctgtttttggactttgttttGGAATGGTTTACT
GGTCATATTTCTCCAATGTTCGCCACATATTGATCGATCAGCAGTCTTTC
TATTACAGCAAACTGTATTTCTTGGATTAACTACTTATGGTCTTATCCTG
GTCATAGTTTCTTATctgtttataaaaacaatgactATTAAGATAATATT
GGAATTTCATGATATGGATACGAGAGACTCATTCAGCACGATTATGCAAA
GCCAATGGTCGTTGTTATTTACCTTACAATTGATATATTGTTTTTATATC
AGCTTGAGATACTATTTGACTCATCGGGAGCATGGTATGATTGAAGTAGC
ATGGGGttgcaaattatttttcttcGTAGTTGTGTCAGTTTTCCCATATC
TCATCTTTCTTCTGATTAATTCTTCAGCTGTATCTCTATGGGTTGTTTTC
TTAGTTGGTTCAAGCTTTCTGTTATTAGTTTCTATTGTCgagttgatttt
tttggtaGTGCGCAGGCGTAGACAGCATGTAAACCAAATTACTTTGCCTG
TATTATGGTGTTATCTTTTGGTTAACACATTCTACGTATTTTGTTCGTAC
TCGTTCTTTGTCAGTATTATGGACTATTTATCggaaatttttcggaaaat
ttttcggaaaaacaTTGTCTTTATTGGTGATTGTAACTACAATAAATTGG
TGCTAGCTGTAGTATTAGTAGGTCCACTGTTCAACTCATTTTGCGCAATA
TTTCTCGATCGCAACTTAAGAAAAACATTCTTCGAAAGATTTACACTGGC
AGAGTGTTGCTGTCGACAGCAGCAGCATCTAAATCTAAATAATGAAAACG
AACCATTGCTTGGCAACCAAGTTGAAGATGTCCGGAATATAGAAGGTAAT
GTTGAAGATTTTCGGACAGGAGTACATCAAGATAGACTTGAAGATCATGC
TTGTTATGGTGCTCATGAAGTAAGAGAAGTCGATGTTCGAACAATGCCAC
GCCAAGCGCCTGAACTTGATGTTGCTTGCGCCGCTCATTCGGCGCCTTTT
GATGACGAAGCAGCTTATGACGTCACTAAAGGTGCACACGGAGCACGCCC
AGATACTTTGATAACTCAAAAAACGAACACTGACAAATAAGGAAAGGACA
ACGAAATAACAGAATACTACGGTAGTATATTCatatttaaagatattttt
attgttttatcaaaatctaaagaaataaaagaaaatcatttgcAATCAGA
GGGAGGAAGCATGAAGACCCTGCGTTTCCTATCAATTTCCTCGCTCTTCA
GATCCTTTCACCCCGCCGGAAAATGGAGAAACAAAGAAGGCCCAAATGGA
ATATGAACGTCTGTTGGTAACTCCTTACGCAACCATCCATTTCTTTTTCT
ACTTGATAAAATTTAGTCGAAATAGTAAAACCAAAACAGTCCTAAGGATA
GCAAACTGC Run BLAST on NCBI protein sequence of TCONS_00004808-protein >TCONS_00004808-protein ID=TCONS_00004808-protein|Name=TCONS_00004808-protein|organism=Clytia hemisphaerica|type=polypeptide|length=440bp
MKHLLSILLISLTTATMVYICVWSYFSETLTIQKRFYIDDENYEDFDVIS
VDNQENKTLNIASLSIICFWTLFWNGLLVIFLQCSPHIDRSAVFLLQQTV
FLGLTTYGLILVIVSYLFIKTMTIKIILEFHDMDTRDSFSTIMQSQWSLL
FTLQLIYCFYISLRYYLTHREHGMIEVAWGCKLFFFVVVSVFPYLIFLLI
NSSAVSLWVVFLVGSSFLLLVSIVELIFLVVRRRRQHVNQITLPVLWCYL
LVNTFYVFCSYSFFVSIMDYLSEIFRKIFRKNIVFIGDCNYNKLVLAVVL
VGPLFNSFCAIFLDRNLRKTFFERFTLAECCCRQQQHLNLNNENEPLLGN
QVEDVRNIEGNVEDFRTGVHQDRLEDHACYGAHEVREVDVRTMPRQAPEL
DVACAAHSAPFDDEAAYDVTKGAHGARPDTLITQKTNTDK Run BLAST on NCBI transcript from alignment at sc0000048:32360..34218 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004808 ID=TCONS_00004808|Name=TCONS_00004808|organism=Clytia hemisphaerica|type=transcript|length=1859bp|location=Sequence derived from alignment at sc0000048:32360..34218 (Clytia hemisphaerica)
GCAGTTTGCTATCCTTAGGACTGTTTTGGTTTTACTATTTCGACTAAATT
TTATCAAGTAGAAAAAGAAATGGATGGTTGCGTAAGGAGTTACCAACAGA
CGTTCATATTCCATTTGGGCCTTCTTTGTTTCTCCATTTTCCGGCGGGGT
GAAAGGATCTGAAGAGCGAGGAAATTGATAGGAAACGCAGGGTCTTCATG
CTTCCTCCCTCTGATTgcaaatgattttcttttatttctttagattttga
taaaacaataaaaatatctttaaatatGAATATACTACCGTAGTATTCTG
TTATTTCGTTGTCCTTTCCTTATTTGTCAGTGTTCGTTTTTTGAGTTATC
AAAGTATCTGGGCGTGCTCCGTGTGCACCTTTAGTGACGTCATAAGCTGC
TTCGTCATCAAAAGGCGCCGAATGAGCGGCGCAAGCAACATCAAGTTCAG
GCGCTTGGCGTGGCATTGTTCGAACATCGACTTCTCTTACTTCATGAGCA
CCATAACAAGCATGATCTTCAAGTCTATCTTGATGTACTCCTGTCCGAAA
ATCTTCAACATTACCTTCTATATTCCGGACATCTTCAACTTGGTTGCCAA
GCAATGGTTCGTTTTCATTATTTAGATTTAGATGCTGCTGCTGTCGACAG
CAACACTCTGCCAGTGTAAATCTTTCGAAGAATGTTTTTCTTAAGTTGCG
ATCGAGAAATATTGCGCAAAATGAGTTGAACAGTGGACCTACTAATACTA
CAGCTAGCACCAATTTATTGTAGTTACAATCACCAATAAAGACAAtgttt
ttccgaaaaattttccgaaaaatttccGATAAATAGTCCATAATACTGAC
AAAGAACGAGTACGAACAAAATACGTAGAATGTGTTAACCAAAAGATAAC
ACCATAATACAGGCAAAGTAATTTGGTTTACATGCTGTCTACGCCTGCGC
ACtaccaaaaaaatcaactcGACAATAGAAACTAATAACAGAAAGCTTGA
ACCAACTAAGAAAACAACCCATAGAGATACAGCTGAAGAATTAATCAGAA
GAAAGATGAGATATGGGAAAACTGACACAACTACgaagaaaaataatttg
caaCCCCATGCTACTTCAATCATACCATGCTCCCGATGAGTCAAATAGTA
TCTCAAGCTGATATAAAAACAATATATCAATTGTAAGGTAAATAACAACG
ACCATTGGCTTTGCATAATCGTGCTGAATGAGTCTCTCGTATCCATATCA
TGAAATTCCAATATTATCTTAATagtcattgtttttataaacagATAAGA
AACTATGACCAGGATAAGACCATAAGTAGTTAATCCAAGAAATACAGTTT
GCTGTAATAGAAAGACTGCTGATCGATCAATATGTGGCGAACATTGGAGA
AATATGACCAGTAAACCATTCCaaaacaaagtccaaaaacagaTAATACT
CAAAGAAGCAATGTTCAATGTCTTGTTTTCCTGATTATCAACACTTATGA
CATCAAAATCTTCATAGTTCTCGTCATCAatgtaaaatcttttttgaatt
gTAAGTGTTTCGGAAAAATATGACCAAACACAAATATAAACCATTGTCGC
TGTCGTTAGACTGATAAGCAAAATGGATAACAAATGCTTCATGATATTTA
TCCTTTAGAAAATATTGCGATTATTTCTTGATTTACTaagaaataatttc
aaaatcagaTCGAGGTAAAAACCAATACGAACATGAATGCACCCATGCTA
GCATTTGCAATCGTAAAAAATTTCCGTTATAGACAGAGTATCTGCTTCCA
TTAAAATGTTTATTCCAGAGTGGAGCAACGTCAAGAATAAAAGAGAAAGT
TTGTTTTTG Coding sequence (CDS) from alignment at sc0000048:32360..34218 >TCONS_00004808 ID=TCONS_00004808|Name=TCONS_00004808|organism=Clytia hemisphaerica|type=CDS|length=1323bp|location=Sequence derived from alignment at sc0000048:32360..34218 (Clytia hemisphaerica)
TTATTTGTCAGTGTTCGTTTTTTGAGTTATCAAAGTATCTGGGCGTGCTC
CGTGTGCACCTTTAGTGACGTCATAAGCTGCTTCGTCATCAAAAGGCGCC
GAATGAGCGGCGCAAGCAACATCAAGTTCAGGCGCTTGGCGTGGCATTGT
TCGAACATCGACTTCTCTTACTTCATGAGCACCATAACAAGCATGATCTT
CAAGTCTATCTTGATGTACTCCTGTCCGAAAATCTTCAACATTACCTTCT
ATATTCCGGACATCTTCAACTTGGTTGCCAAGCAATGGTTCGTTTTCATT
ATTTAGATTTAGATGCTGCTGCTGTCGACAGCAACACTCTGCCAGTGTAA
ATCTTTCGAAGAATGTTTTTCTTAAGTTGCGATCGAGAAATATTGCGCAA
AATGAGTTGAACAGTGGACCTACTAATACTACAGCTAGCACCAATTTATT
GTAGTTACAATCACCAATAAAGACAAtgtttttccgaaaaattttccgaa
aaatttccGATAAATAGTCCATAATACTGACAAAGAACGAGTACGAACAA
AATACGTAGAATGTGTTAACCAAAAGATAACACCATAATACAGGCAAAGT
AATTTGGTTTACATGCTGTCTACGCCTGCGCACtaccaaaaaaatcaact
cGACAATAGAAACTAATAACAGAAAGCTTGAACCAACTAAGAAAACAACC
CATAGAGATACAGCTGAAGAATTAATCAGAAGAAAGATGAGATATGGGAA
AACTGACACAACTACgaagaaaaataatttgcaaCCCCATGCTACTTCAA
TCATACCATGCTCCCGATGAGTCAAATAGTATCTCAAGCTGATATAAAAA
CAATATATCAATTGTAAGGTAAATAACAACGACCATTGGCTTTGCATAAT
CGTGCTGAATGAGTCTCTCGTATCCATATCATGAAATTCCAATATTATCT
TAATagtcattgtttttataaacagATAAGAAACTATGACCAGGATAAGA
CCATAAGTAGTTAATCCAAGAAATACAGTTTGCTGTAATAGAAAGACTGC
TGATCGATCAATATGTGGCGAACATTGGAGAAATATGACCAGTAAACCAT
TCCaaaacaaagtccaaaaacagaTAATACTCAAAGAAGCAATGTTCAAT
GTCTTGTTTTCCTGATTATCAACACTTATGACATCAAAATCTTCATAGTT
CTCGTCATCAatgtaaaatcttttttgaattgTAAGTGTTTCGGAAAAAT
ATGACCAAACACAAATATAAACCATTGTCGCTGTCGTTAGACTGATAAGC
AAAATGGATAACAAATGCTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004808-exon-sc0000048-1491911889:32360..34218 | TCONS_00004808-exon-sc0000048-1491911889:32360..34218 | Clytia hemisphaerica | exon |
| TCONS_00004808-exon-sc0000048-1510915933:32360..34218 | TCONS_00004808-exon-sc0000048-1510915933:32360..34218 | Clytia hemisphaerica | exon |
| TCONS_00004808-exon-sc0000048-1575043694:32360..34218 | TCONS_00004808-exon-sc0000048-1575043694:32360..34218 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000048 | supercontig | sc0000048:32360..34218 . |
Blast
The following BLAST results are available for this feature:
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