TCONS_00004806 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004806
Unique NameTCONS_00004806
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length492

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004806 ID=TCONS_00004806|Name=TCONS_00004806|organism=Clytia hemisphaerica|type=transcript|length=492bp
CTTTGCCGAAAAAATATCGCGTTTGGTGAGActtttcaaaatgtaaacaa
agctaATATTCCATTACTCAAAACCACATAAACATATTGAATAATTTGGT
TGCAGAGGAAGGTAGCTGTGAACATAAGtgtttactttctttttattatg
gTGTTTTATTATTGGATATTCATACAGATGAAGTTCAGAAGGATTTGGAT
AACAATAATAGACAGAATTAGGTATTATTCAGTATTTTTCCTCACATAAG
TGGGTCTTGTACTTTCCCTAAAAGATAGctgtttttgaatgtttttatgg
TAGATTTTGAGCTTCTTTCACTATATGTTGCTTTAGAATAGCTGAATAGA
TGctgcaaaaacattttaaagagtCCAAGAGGGAATTTGAGGACTCTACA
GTGCCATTTTGCAATGACGTGAATGTTGTCGGCCGCACAAAGCTAATTCT
AGGGGAAACTATGATATGCCGAAACATAAATTCTGAGATTAA
Run BLAST on NCBI

transcript from alignment at sc0000048:12943..13434

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004806 ID=TCONS_00004806|Name=TCONS_00004806|organism=Clytia hemisphaerica|type=transcript|length=492bp|location=Sequence derived from alignment at sc0000048:12943..13434 (Clytia hemisphaerica)
TTAATCTCAGAATTTATGTTTCGGCATATCATAGTTTCCCCTAGAATTAG
CTTTGTGCGGCCGACAACATTCACGTCATTGCAAAATGGCACTGTAGAGT
CCTCAAATTCCCTCTTGGactctttaaaatgtttttgcagCATCTATTCA
GCTATTCTAAAGCAACATATAGTGAAAGAAGCTCAAAATCTAccataaaa
acattcaaaaacagCTATCTTTTAGGGAAAGTACAAGACCCACTTATGTG
AGGAAAAATACTGAATAATACCTAATTCTGTCTATTATTGTTATCCAAAT
CCTTCTGAACTTCATCTGTATGAATATCCAATAATAAAACAccataataa
aaagaaagtaaacaCTTATGTTCACAGCTACCTTCCTCTGCAACCAAATT
ATTCAATATGTTTATGTGGTTTTGAGTAATGGAATATtagctttgtttac
attttgaaaagTCTCACCAAACGCGATATTTTTTCGGCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002715XLOC_002715Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004806-exon-sc0000048-1491911889:12943..13434TCONS_00004806-exon-sc0000048-1491911889:12943..13434Clytia hemisphaericaexon
TCONS_00004806-exon-sc0000048-1510915933:12943..13434TCONS_00004806-exon-sc0000048-1510915933:12943..13434Clytia hemisphaericaexon
TCONS_00004806-exon-sc0000048-1575043694:12943..13434TCONS_00004806-exon-sc0000048-1575043694:12943..13434Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000048supercontigsc0000048:12943..13434 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.17542	0.284821	0.749831	1.96443	0.220876	0.442874	0.483522	0.452667	0.592244	0.883889	0.875134	0.852662	0.554239	0.685469	0.294042	0.70533	0.376438	0.521973	1.2532	1.24081	1.30516	0.53209	0.287478	0.522718	0	0	0.753169	0.834061	0.154318	0.171131
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004806 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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