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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004794 ID=TCONS_00004794|Name=TCONS_00004794|organism=Clytia hemisphaerica|type=transcript|length=7972bpRun BLAST on NCBI protein sequence of TCONS_00004794-protein >TCONS_00004794-protein ID=TCONS_00004794-protein|Name=TCONS_00004794-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2084bp MRFEFVNIIFITKLFDFVTSQCADQLPCFAAPLDISKNEGFNLNINSLCGRun BLAST on NCBI transcript from alignment at sc0000048:378866..459114- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004794 ID=TCONS_00004794|Name=TCONS_00004794|organism=Clytia hemisphaerica|type=transcript|length=80249bp|location=Sequence derived from alignment at sc0000048:378866..459114- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000048:378866..459114- >TCONS_00004794 ID=TCONS_00004794|Name=TCONS_00004794|organism=Clytia hemisphaerica|type=CDS|length=168885bp|location=Sequence derived from alignment at sc0000048:378866..459114- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00004794 vs. Swiss-Prot (Human)
Match: LAMC1 (Laminin subunit gamma-1 OS=Homo sapiens GN=LAMC1 PE=1 SV=3) HSP 1 Score: 418.313 bits (1074), Expect = 7.508e-119 Identity = 289/844 (34.24%), Postives = 412/844 (48.82%), Query Frame = 3
Query: 2487 VYMSYLYG-SLYDDGFSCNCDPVGSINPAVCNTYGGQ-CNCKQNIYGRTCSTCLP-------DHYNFTSGLGCRECDCNLEGSDNNSC--DP-------NTGQCP-CKSNVIGRTCNKCALNYYGISSAQGCRACACNPLYSVSSSCDQSGNCRCKPGVSGAKCTQCANGYYDLTINGCKSCDCNPLGTAGNRCNTASGICNCKALTMGERCANCTVGYYGFSSEFPDTCLKCHCTGKTSDCDVAPGYYIMFVNTTFSTRRDNNLLEGWKSVDENGVNAGKGSWNWAPEYSIERGFLKVDDTNNSPQLYFSAPDIYLGNKRSSYMYYLTFDMTQQSVTNPRNRQQEGDIIIKGKNQNFKLVALVTLVPLQYQRFRSYKIKFYEKNWFKNTPSGDNP-----SSLEMLNTLSDLEYIYIRAKWTSNDGEFCGLSNVVMQYSTYNIGSSTGLTPARNVEYCNCPVQYSGQFCQECNVGFTRDPPNGGASDDCKACQCNSHAAFCDKANGTCFNCLHNTKGNNCEFCKDGFYGTATNKQPDDCKSCLCPGGPHAPNQFATKCSLNNDNSHTCTDCQTGYTGQRCERCSDGYYGNPMDPRGK---CQKCTCNGNIDPSAAGNCNTETGECLRCLYDTFGKECEFCRPGFFGDAI----AKSCRACSCNTLGSV--DTSCQNMTGQCNCRPNVVGRICDKCAENTYDFNSADGCKLCQCHLKGSKTQQCNLVTGKCECNPRVEGDKCDRCATGYYDL-DKGCLPCNCNTSFTVSNTTCHPQTGQCQCRDSSLGGPYSGRTCSECSVNAI--GTPPHCELCHSPCYDNWNNYINREASEIARMQANVTSL 4910
V SY Y S + G C C+ G + + N + CNCK N YG C CLP S C CDCN + C DP + G C C+ N G C +C N++ + + + C +C C+P+ S+S+ CD G C CKPGV G KC +C G++ LT GC+ C C+P G+ + CN +G C CK G C C G++ S P C C C G +S C A GY + +++TF D GW++ +G A + E+S ER + V + P+ YF AP +LG + SY L+F V R D++++G L VPL Q SY + K F+ + D P + E L++L I IR ++ + L +V + + G PA VE C CPV Y GQFC+ C G+ R+ PN G C C CN H+ CD G C NC NT G +CE C DG+YG +T DC+ C CPGG TK CT+C TG TG+RCE C DGY+G+P+ G C+ C C+ NIDP+A GNCN TGECL+C+Y+T G C+ C+ GFFG+ + A C+AC+CN G++ +SC +TGQC C P+V G+ C C Y+ S GC+ C CH GS QC++ TG+CEC P + G C+RC ++ +GC PC+C+ ++S C G+C+CR+ + G C +C N + P C+ C + CY + + ++ +++ + +L
Sbjct: 269 VLKSYYYAISDFAVGGRCKCN--GHASECMKNEFDKLVCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDCN---GRSQECYFDPELYRSTGHGGHCTNCQDNTDGAHCERCRENFFRLGNNEACSSCHCSPVGSLSTQCDSYGRCSCKPGVMGDKCDRCQPGFHSLTEAGCRPCSCDPSGSI-DECNIETGRCVCKDNVEGFNCERCKPGFFNLESSNPRGCTPCFCFGHSSVCTNAVGYSVYSISSTFQIDED-----GWRAEQRDGSEA-------SLEWSSERQDIAVISDSYFPR-YFIAPAKFLGKQVLSYGQNLSFSF---RVDRRDTRLSAEDLVLEG-------AGLRVSVPLIAQ-GNSYPSETTVKYVFRLHEATDYPWRPALTPFEFQKLLNNLTSIKIRGTYSERSAGY--LDDVTLASARPGPG-----VPATWVESCTCPVGYGGQFCEMCLSGYRRETPNLGPYSPCVLCACNGHSETCDPETGVC-NCRDNTAGPHCEKCSDGYYGDSTAGTSSDCQPCPCPGGSSCAVVPKTK-------EVVCTNCPTGTTGKRCELCDDGYFGDPLGRNGPVRLCRLCQCSDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKDGFFGNPLAPNPADKCKACNCNLYGTMKQQSSCNPVTGQCECLPHVTGQDCGACDPGFYNLQSGQGCERCDCHALGSTNGQCDIRTGQCECQPGITGQHCERCEVNHFGFGPEGCKPCDCHPEGSLS-LQCK-DDGRCECREG-----FVGNRCDQCEENYFYNRSWPGCQECPA-CYRLVKDKVADHRVKLQELESLIANL 1059 HSP 2 Score: 176.022 bits (445), Expect = 1.245e-43 Identity = 137/472 (29.03%), Postives = 210/472 (44.49%), Query Frame = 3
Query: 501 NEGFNLNI--NSLCGSPPEDFCA--GVDCNFK----CDGNDPTNSYSPSRITDAYELE--TFWKSR------NFDEPVTMVFDFGSKMILHQITITFQFEFPNGLYIQKSSDDGTTYLTLMYYAIRCNDTFQLAEANKYNRLDVLCFKLNPTSNQQLYQISYA---PRRDNYVATEVLKGG----------IVRDYYIATNVKIILEEF--FKPSDFN-PNVADRRKFYFAIRDVDIQASCYCNGMSNQCDDKDFGK--CVCQKNTEGNNCERCKPLFNNKPWTFGQA-----CDGCTCNNHASSCF-----YNAAKGVGVCQNCIHNTKGDECDECKSGFFRNTTFLISSPEACAECDCDTAGVLFGSHICDPLSGKCICKIFVEGDRCDTCKDGFFGLSGELIQGCDVCDCSTSGTVAGQQVCNKTSGQCLCKEGFTDRRCSTCKPGYYGFPVSAPSQCVECNCNPSGSV 1784
N FN+ + + CG+PPE++C GV K CD P + + +TD T+W+S+ + + + G + + + F P I K + + ++ YY+ C +T+ +K NR + + Q L ++ P VA L+G +++++ AT++++ L F FN P V + +Y+AI D + C CNG +++C +F K C C+ NT G +CE+C P FN++PW A C C CN + C+ Y + G C NC NT G C+ C+ FFR + + EAC+ C C G L S CD G+C CK V GD+CD C+ GF L+ GC C C SG++ CN +G+C+CK+ C CKPG++ S P C C C SV
Sbjct: 56 NAAFNVTVVATNTCGTPPEEYCVQTGVTGVTKSCHLCDAGQPHLQHGAAFLTDYNNQADTTWWQSQTMLAGVQYPSSINLTLHLGKAFDITYVRLKFHTSRPESFAIYKRTREDGPWIPYQYYSGSCENTY-----SKANRGFI---RTGGDEQQALCTDEFSDISPLTGGNVAFSTLEGRPSAYNFDNSPVLQEWVTATDIRVTLNRLNTFGDEVFNDPKVL--KSYYYAISDFAVGGRCKCNGHASECMKNEFDKLVCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTGHGGHCTNCQDNTDGAHCERCRENFFR-----LGNNEACSSCHCSPVGSL--STQCDSY-GRCSCKPGVMGDKCDRCQPGFHSLTE---AGCRPCSCDPSGSI---DECNIETGRCVCKDNVEGFNCERCKPGFFNLESSNPRGCTPCFCFGHSSV 503 HSP 3 Score: 130.954 bits (328), Expect = 5.727e-30 Identity = 84/243 (34.57%), Postives = 115/243 (47.33%), Query Frame = 3
Query: 1182 CQKNTEGNNCERCK------PLFNNKPWTFGQACDGCTC-NNHASSCFYNAAKGVGVCQNCIHNTKGDECDECKSGFFRNTTFLISSP-EACAECDCDTAGVLFGSHICDPLSGKCICKIFVEGDRCDTCKDGFFGLSGELIQGCDVCDCSTSGTVAGQQVCNKTSGQCLCKEGFTDRRCSTCKPGYYGFPVSAPSQCVECNCNPSGSVNMTCDQSGQCFCRDFYFDRTCSSIRIGYFSANVW 1886
C T G CE C PL N P C C C +N + N + G C CI+NT G CD CK GFF N L +P + C C+C+ G + C+P++G+C C V G C C GF+ L QGC+ CDC G+ GQ C+ +GQC C+ G T + C C+ ++GF P C C+C+P GS+++ C G+C CR+ + C YF W
Sbjct: 795 CPTGTTGKRCELCDDGYFGDPLGRNGPVRL---CRLCQCSDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKDGFFGNP--LAPNPADKCKACNCNLYGTMKQQSSCNPVTGQCECLPHVTGQDCGACDPGFYNLQSG--QGCERCDCHALGSTNGQ--CDIRTGQCECQPGITGQHCERCEVNHFGF---GPEGCKPCDCHPEGSLSLQCKDDGRCECREGFVGNRCDQCEENYFYNRSW 1025 HSP 4 Score: 112.849 bits (281), Expect = 2.184e-24 Identity = 83/254 (32.68%), Postives = 114/254 (44.88%), Query Frame = 3
Query: 1125 CYCNGMSNQCDDKDFGKCVCQKNTEGNNCERCKP-LFNNKPWTFGQACDGCTCNNHASSCFYNAAKGVGVCQNCIHNTKGDECDECKSGFFRNTTFLISSPEACAECDCDTAGVLFGSHICDPLSGKCI-CKIFVEGDRCDTCKDGFFG--LSGELIQGCDVCDCSTSGTVAGQQVCNKTSGQCLCKEGFTDRRCSTCKPGYYGFPVSAPSQCVECNCNPSGSVNMTCD-QSGQCFCRDFYFDRTCSSIRIGYF 1871
C CNG S CD + G C C+ NT G +CE+C + + C C C +S K V VC NC T G C+ C G+F + C C C C+ L+G+C+ C G CD CKDGFFG L+ C C+C+ GT+ Q CN +GQC C T + C C PG+Y + + C C+C+ GS N CD ++GQC C+ + C + +F
Sbjct: 724 CACNGHSETCD-PETGVCNCRDNTAGPHCEKCSDGYYGDSTAGTSSDCQPCPCPGGSSCAVVPKTKEV-VCTNCPTGTTGKRCELCDDGYFGDPLGRNGPVRLCRLCQCSDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKDGFFGNPLAPNPADKCKACNCNLYGTMKQQSSCNPVTGQCECLPHVTGQDCGACDPGFYN--LQSGQGCERCDCHALGSTNGQCDIRTGQCECQPGITGQHCERCEVNHF 973 The following BLAST results are available for this feature:
BLAST of TCONS_00004794 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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