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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004785 ID=TCONS_00004785|Name=TCONS_00004785|organism=Clytia hemisphaerica|type=transcript|length=3633bpRun BLAST on NCBI protein sequence of TCONS_00004785-protein >TCONS_00004785-protein ID=TCONS_00004785-protein|Name=TCONS_00004785-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1194bp NFHNDTDLLNSALCITNLLNMGGEVLLHDVVDNITTQVQVGEQHGSPYAIRun BLAST on NCBI transcript from alignment at sc0000048:282627..301578- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004785 ID=TCONS_00004785|Name=TCONS_00004785|organism=Clytia hemisphaerica|type=transcript|length=18952bp|location=Sequence derived from alignment at sc0000048:282627..301578- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000048:282627..301578- >TCONS_00004785 ID=TCONS_00004785|Name=TCONS_00004785|organism=Clytia hemisphaerica|type=CDS|length=82455bp|location=Sequence derived from alignment at sc0000048:282627..301578- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004785 vs. Swiss-Prot (Human)
Match: SL9C1 (Sodium/hydrogen exchanger 10 OS=Homo sapiens GN=SLC9C1 PE=2 SV=2) HSP 1 Score: 359.377 bits (921), Expect = 2.534e-104 Identity = 289/1076 (26.86%), Postives = 538/1076 (50.00%), Query Frame = 3
Query: 168 ICILGAVIRQLMNDTNLPYTVVLIMLGVCFGLISRSYPSVKSYT-SLATSNPHXXXXXXXXXXXXESAFAMDVHIFYKMFTQVCIXXXXXXXXXXXXXXXXXHFVFYYNWSWMECFLFGSIISATDPVAVVALLSSLGTSKQLGIIIEGESLLNDGAAIVLYNIFYNLSFKQMT------PTEIGLYFPRVXXXXXXXXXXXXKVVVLWLQHVFNDAMVEIAITVSSTYLVFYIGENVLGVSGVLAVVMLGIEINQHRTSISPEVEVFLHRFWEILAYLANTLIFFIVGVAIMEKAFDVIEELDWFYILVDYCGIFVIRTFVVVLFSPMLTRIGYGLPWKDAVVMVWXXXXXXXXXXXXXXXXXDHEEVGN-----KILIHTAGIVLLTLFVNATTIRPLLKILGMSEISDAKRAAMNNAVNRLQQNQDQSLATLKTDRFLADADWSLAERACTICNPYAEDDNDDLEHHNLSYLKRSTNCPKCHSLVPNQPSPKEFSDMA-EDGRQAVIKAQKMSFWKQFERGVLSSDAVNVLVNLADTCLDERDRLFKLTELSSHWKVPKYWEKTRQRLEKFRQARASDRVPPPRNLFLRYNYMTSTHVAFDPVMNVLIAVNMIPIFL----ELSVPDDNEMMPYLKYINYVYCGVYVIELTIKILAFRGYFFRDGWNLLDFGXXXXXXXXXXXXMATSGATGSFSPSILKVARVFRILRMGRLLRLTKGLIPKLIDLVNNRINRQLSFGYDIGKGFVVSEEEVAKIIDQLVLDPKIASDLKMRLDFIRLQVVRSLGLLQRQHPGIAISVKTRQAIRSVLNNARDTLYELRSNGVLDKNEANKLEREIEVKMKQQLHAPAFIPPKKPEDLLKSLLWLQGMEDDAVTYITSNAEMLSFDYGDVIVKQGEVCDGIYLIISGMVKLLGVSMGTVDFQQLASSNKQQFQ-ISADYLFAGNVIGEMGLLTDSVRNASITCETTVQVYFISVDKMQRAMKRFNGL-TEGLWKVCGMRMAVPLLMEHQKYQIWSKEHLRIICENSQMASL---DDTMIYRLPENTEEAILIHGDIQCVRTKEQFTSPIILP 3329
I +GA + + + D +P V+L +LG F ++S + V+ Y ++ +P L +F PV+ F +AF MD ++ K+F Q+ ++++PG V L V + LF +I+ ++DP+ A + LG S+ L +I GESL+ +++ + + + + EI + G+++ K++ W+ VF D + I++ S YL+FYI E ++G+SG+ + ++G+ +N + E E L FW L+ +A ++F G+ I + IE +D +Y L Y + V+R ++L SP+L+R+G+ W+ +MV ++G + +AL +A G+ +IL H + L+TL VN + + ILG+ + + K ++ Q+ + + LK D+ LA+ADW++ E+A T+ NPY ++ + EH + CP C N+ + F+ A E + ++ AQ S+ +Q+ +LS AV VLV A++ +++ + L + ++ + K R+ L + ++ P + F R + F+ V ++I +N+ P + +L+V +E LK+ NY + +Y++E +KI A R FF WN+ + I ++ ++ + + T + + +V ++++ R+LR+ K + PKL+ +++ R++ Q +F Y I KG+V E ++ IIDQ+ +I L ++ ++ LG L+ HP IA++VKT++ I +LN A + L G++ K E + + I K K+ L + + I P E++L + WL D + +I A++++FD G+ I ++G+ GIY+IISGMVKL G + Q+ S ++ F I DY+ +G +IGE+ LT+ S TC+T V+ FI + A ++ + L + +W G+ + + EH Y+ W+ ++++ N + + T IY EN ILIHG ++ ++ + +P ++P
Sbjct: 25 ISSIGAFLNRHLEDFPIPVPVILFLLGCSFEVLSFTSSQVQRYANAIQWMSPDLFFRIFTPVVFFTTAFDMDTYMLQKLFWQILLISIPGFLVNYILVLWHLASVNQLLLKPTQWLLFSAILVSSDPMLTAAAIRDLGLSRSLISLINGESLMTSVISLITFTSIMDFDQRLQSKRNHTLAEEIVGGICSYIIASFLFGILSSKLIQFWMSTVFGDDVNHISLIFSILYLIFYICE-LVGMSGIFTLAIVGLLLNSTSFKAAIE-ETLLLEFWTFLSRIAFLMVFTFFGLLIPAHTYLYIEFVDIYYSLNIYLTLIVLRFLTLLLISPVLSRVGHEFSWRWIFIMVCSEMKGMPNINMALLLAYSDLYFGSDKEKSQILFHGVLVCLITLVVNRFILPVAVTILGLRDATSTKYKSVCCTFQHFQELTKSAASALKFDKDLANADWNMIEKAITLENPYMLNEEETTEHQKV-------KCPHC-----NKEIDEIFNTEAMELANRRLLSAQIASYQRQYRNEILSQSAVQVLVGAAESFGEKKGKCMSLDTIKNYSESQKTVTFARKLLLNWVYNTRKEKEGPSKYFFFRICHTIVFTEEFEHVGYLVILMNIFPFIISWISQLNVIYHSE----LKHTNYCFLTLYILEALLKIAAMRKDFFSHAWNIFELAITLIGILHV---ILIEIDTIKYIFNETEVIVFIKVVQFFRILRIFKLIAPKLLQIIDKRMSHQKTFWYGILKGYVQGEADIMTIIDQITSSKQIKQMLLKQVIRNMEHAIKELGYLEYDHPEIAVTVKTKEEINVMLNMATEILKAFGLKGIISKTEGAGINKLIMAKKKEVLDSQSIIRPLTVEEVLYHIPWLDK-NKDYINFIQEKAKVVTFDCGNDIFEEGDEPKGIYIIISGMVKLEKSKPG-LGIDQMVESKEKDFPIIDTDYMLSGEIIGEINCLTNEPMKYSATCKTVVETCFIPKTHLYDAFEQCSPLIKQKMWLKLGLAITARKIREHLSYEDWNY-NMQLKLSNIYVVDIPMSTKTDIY--DENLIYVILIHGAVEDCLLRKTYRAPFLIP 1074 The following BLAST results are available for this feature:
BLAST of TCONS_00004785 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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