TCONS_00004785-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00004785-protein
Unique Name	TCONS_00004785-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1194

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00004785-protein ID=TCONS_00004785-protein|Name=TCONS_00004785-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1194bp
NFHNDTDLLNSALCITNLLNMGGEVLLHDVVDNITTQVQVGEQHGSPYAI
LFIFGICILGAVIRQLMNDTNLPYTVVLIMLGVCFGLISRSYPSVKSYTS
LATSNPHLLLSVFLPVLLFESAFAMDVHIFYKMFTQVCILAVPGMAVAAA
LSAVMAHFVFYYNWSWMECFLFGSIISATDPVAVVALLSSLGTSKQLGII
IEGESLLNDGAAIVLYNIFYNLSFKQMTPTEIGLYFPRVALGGMALGLMA
GKVVVLWLQHVFNDAMVEIAITVSSTYLVFYIGENVLGVSGVLAVVMLGI
EINQHRTSISPEVEVFLHRFWEILAYLANTLIFFIVGVAIMEKAFDVIEE
LDWFYILVDYCGIFVIRTFVVVLFSPMLTRIGYGLPWKDAVVMVWGGLRG
AVGLALALEVALDHEEVGNKILIHTAGIVLLTLFVNATTIRPLLKILGMS
EISDAKRAAMNNAVNRLQQNQDQSLATLKTDRFLADADWSLAERACTICN
PYAEDDNDDLEHHNLSYLKRSTNCPKCHSLVPNQPSPKEFSDMAEDGRQA
VIKAQKMSFWKQFERGVLSSDAVNVLVNLADTCLDERDRLFKLTELSSHW
KVPKYWEKTRQRLEKFRQARASDRVPPPRNLFLRYNYMTSTHVAFDPVMN
VLIAVNMIPIFLELSVPDDNEMMPYLKYINYVYCGVYVIELTIKILAFRG
YFFRDGWNLLDFGIVVLSVIDLVVDMATSGATGSFSPSILKVARVFRILR
MGRLLRLTKGLIPKLIDLVNNRINRQLSFGYDIGKGFVVSEEEVAKIIDQ
LVLDPKIASDLKMRLDFIRLQVVRSLGLLQRQHPGIAISVKTRQAIRSVL
NNARDTLYELRSNGVLDKNEANKLEREIEVKMKQQLHAPAFIPPKKPEDL
LKSLLWLQGMEDDAVTYITSNAEMLSFDYGDVIVKQGEVCDGIYLIISGM
VKLLGVSMGTVDFQQLASSNKQQFQISADYLFAGNVIGEMGLLTDSVRNA
SITCETTVQVYFISVDKMQRAMKRFNGLTEGLWKVCGMRMAVPLLMEHQK
YQIWSKEHLRIICENSQMASLDDTMIYRLPENTEEAILIHGDIQCVRTKE
QFTSPIILPKNKKAFTYNLKKLPRIMIIINHKSSALLSSAKTKNNNFVDH
QQKIANSFVVDHEGHDDDDDDNDNQLDHRTAGCQVKQTVVHHNA

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002706	XLOC_002706	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00004785	TCONS_00004785	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000595	cNMP-bd_dom
IPR014710	RmlC-like_jellyroll
IPR005821	Ion_trans_dom
IPR006153	Cation/H_exchanger
IPR018488	cNMP-bd_CS
IPR018490	cNMP-bd-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0005216	ion channel activity
GO:0015299	solute:proton antiporter activity

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport
GO:0006811	ion transport
GO:0006812	cation transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006812	cation transport
biological_process	GO:0006811	ion transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0005216	ion channel activity
molecular_function	GO:0015299	solute:proton antiporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000595	Cyclic nucleotide-binding domain	SMART	SM00100	cnmp_10	coord: 906..1037 e-value: 0.0011 score: 28.2
IPR000595	Cyclic nucleotide-binding domain	PFAM	PF00027	cNMP_binding	coord: 926..1024 e-value: 2.6E-12 score: 46.5
IPR000595	Cyclic nucleotide-binding domain	PROSITE	PS50042	CNMP_BINDING_3	coord: 906..1022 score: 16.946
IPR014710	RmlC-like jelly roll fold	GENE3D	2.60.120.10		coord: 866..1052 e-value: 2.3E-23 score: 81.9
IPR005821	Ion transport domain	PFAM	PF00520	Ion_trans	coord: 645..761 e-value: 8.7E-17 score: 61.1
IPR006153	Cation/H+ exchanger	PFAM	PF00999	Na_H_Exchanger	coord: 51..445 e-value: 2.4E-60 score: 204.2
None	No IPR available	GENE3D	1.20.120.350		coord: 426..759 e-value: 5.4E-26 score: 90.6
None	No IPR available	CDD	cd00038	CAP_ED	coord: 906..1033 e-value: 3.23729E-16 score: 75.8254
None	No IPR available	SUPERFAMILY	81324	Voltage-gated potassium channels	coord: 641..762
IPR018488	Cyclic nucleotide-binding, conserved site	PROSITE	PS00888	CNMP_BINDING_1	coord: 933..949
IPR018490	Cyclic nucleotide-binding-like	SUPERFAMILY	51206	cAMP-binding domain-like	coord: 899..1040

Blast

[Close]

BLAST of TCONS_00004785-protein vs. Swiss-Prot (Human)
Match: SL9C1 (Sodium/hydrogen exchanger 10 OS=Homo sapiens GN=SLC9C1 PE=2 SV=2)

HSP 1 Score: 426.402 bits (1095), Expect = 1.461e-129
Identity = 302/1095 (27.58%), Postives = 548/1095 (50.05%), Query Frame = 0

Query:   47 PYAILFIFGICILGAVIRQLMNDTNLPYTVVLIMLGVCFGLISRSYPSVKSYT-SLATSNPHLLLSVFLPVLLFESAFAMDVHIFYKMFTQVCILAVPGMAVAAALSAVMAHF-----VFYYNWSWMECFLFGSIISATDPVAVVALLSSLGTSKQLGIIIEGESLLNDGAAIVLYNIFYNLSFKQMTPTEIGLYFPRVALGGMA--------LGLMAGKVVVLWLQHVFNDAMVEIAITVSSTYLVFYIGENVLGVSGVLAVVMLGIEINQHRTSISPEVEVFLHRFWEILAYLANTLIFFIVGVAIMEKAFDVIEELDWFYILVDYCGIFVIRTFVVVLFSPMLTRIGYGLPWKDAVVMVWGGLRGAVGLALALEVALDHEEVGN-----KILIHTAGIVLLTLFVNATTIRPLLKILGMSEISDAKRAAMNNAVNRLQQNQDQSLATLKTDRFLADADWSLAERACTICNPYAEDDNDDLEHHNLSYLKRSTNCPKCHSLVPNQPSPKEFSDMA-EDGRQAVIKAQKMSFWKQFERGVLSSDAVNVLVNLADTCLDERDRLFKLTELSSHWKVPKYWEKTRQRLEKFRQARASDRVPPPRNLFLRYNYMTSTHVAFDPVMNVLIAVNMIPIFL----ELSVPDDNEMMPYLKYINYVYCGVYVIELTIKILAFRGYFFRDGWNLLDFGIV---VLSVIDLVVDMATSGATGSFSPSILKVARVFRILRMGRLLRLTKGLIPKLIDLVNNRINRQLSFGYDIGKGFVVSEEEVAKIIDQLVLDPKIASDLKMRLDFIRLQVVRSLGLLQRQHPGIAISVKTRQAIRSVLNNARDTLYELRSNGVLDKNEANKLEREIEVKMKQQLHAPAFIPPKKPEDLLKSLLWLQGMEDDAVTYITSNAEMLSFDYGDVIVKQGEVCDGIYLIISGMVKLLGVSMGTVDFQQLASSNKQQFQ-ISADYLFAGNVIGEMGLLTDSVRNASITCETTVQVYFISVDKMQRAMKRFNGL-TEGLWKVCGMRMAVPLLMEHQKYQIWSKEHLRIICENSQMASL---DDTMIYRLPENTEEAILIHGDIQCVRTKEQFTSPIILP 1109
            P  IL +  I  +GA + + + D  +P  V+L +LG  F ++S +   V+ Y  ++   +P L   +F PV+ F +AF MD ++  K+F Q+ ++++PG  V   L  V+ H      +      W+   LF +I+ ++DP+   A +  LG S+ L  +I GESL+    +++ +     + F Q   ++         +GG+          G+++ K++  W+  VF D +  I++  S  YL+FYI E ++G+SG+  + ++G+ +N      + E E  L  FW  L+ +A  ++F   G+ I    +  IE +D +Y L  Y  + V+R   ++L SP+L+R+G+   W+   +MV   ++G   + +AL +A      G+     +IL H   + L+TL VN   +   + ILG+ + +  K  ++       Q+    + + LK D+ LA+ADW++ E+A T+ NPY  ++ +  EH  +        CP C     N+   + F+  A E   + ++ AQ  S+ +Q+   +LS  AV VLV  A++  +++ +   L  + ++ +  K     R+ L  +      ++  P +  F R  +       F+ V  ++I +N+ P  +    +L+V   +E    LK+ NY +  +Y++E  +KI A R  FF   WN+ +  I    +L VI + +D        +     +KV + FRILR+ +L+       PKL+ +++ R++ Q +F Y I KG+V  E ++  IIDQ+    +I   L  ++       ++ LG L+  HP IA++VKT++ I  +LN A + L      G++ K E   + + I  K K+ L + + I P   E++L  + WL     D + +I   A++++FD G+ I ++G+   GIY+IISGMVKL     G +   Q+  S ++ F  I  DY+ +G +IGE+  LT+     S TC+T V+  FI    +  A ++ + L  + +W   G+ +    + EH  Y+ W+  ++++   N  +  +     T IY   EN    ILIHG ++    ++ + +P ++P
Sbjct:   16 PEVILTLSLISSIGAFLNRHLEDFPIPVPVILFLLGCSFEVLSFTSSQVQRYANAIQWMSPDLFFRIFTPVVFFTTAFDMDTYMLQKLFWQILLISIPGFLVNYIL--VLWHLASVNQLLLKPTQWL---LFSAILVSSDPMLTAAAIRDLGLSRSLISLINGESLMTSVISLITFTSI--MDFDQRLQSKRNHTLAEEIVGGICSYIIASFLFGILSSKLIQFWMSTVFGDDVNHISLIFSILYLIFYICE-LVGMSGIFTLAIVGLLLNSTSFKAAIE-ETLLLEFWTFLSRIAFLMVFTFFGLLIPAHTYLYIEFVDIYYSLNIYLTLIVLRFLTLLLISPVLSRVGHEFSWRWIFIMVCSEMKGMPNINMALLLAYSDLYFGSDKEKSQILFHGVLVCLITLVVNRFILPVAVTILGLRDATSTKYKSVCCTFQHFQELTKSAASALKFDKDLANADWNMIEKAITLENPYMLNEEETTEHQKV-------KCPHC-----NKEIDEIFNTEAMELANRRLLSAQIASYQRQYRNEILSQSAVQVLVGAAESFGEKKGKCMSLDTIKNYSESQKTVTFARKLLLNWVYNTRKEKEGPSKYFFFRICHTIVFTEEFEHVGYLVILMNIFPFIISWISQLNVIYHSE----LKHTNYCFLTLYILEALLKIAAMRKDFFSHAWNIFELAITLIGILHVILIEIDTIKYIFNETEVIVFIKVVQFFRILRIFKLIA------PKLLQIIDKRMSHQKTFWYGILKGYVQGEADIMTIIDQITSSKQIKQMLLKQVIRNMEHAIKELGYLEYDHPEIAVTVKTKEEINVMLNMATEILKAFGLKGIISKTEGAGINKLIMAKKKEVLDSQSIIRPLTVEEVLYHIPWLDK-NKDYINFIQEKAKVVTFDCGNDIFEEGDEPKGIYIIISGMVKLEKSKPG-LGIDQMVESKEKDFPIIDTDYMLSGEIIGEINCLTNEPMKYSATCKTVVETCFIPKTHLYDAFEQCSPLIKQKMWLKLGLAITARKIREHLSYEDWNY-NMQLKLSNIYVVDIPMSTKTDIY--DENLIYVILIHGAVEDCLLRKTYRAPFLIP 1074

The following BLAST results are available for this feature:

BLAST of TCONS_00004785-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00004785-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SL9C1	1.461e-129	27.58	Sodium/hydrogen exchanger 10 OS=Homo sapiens GN=SL...	[more]

You are here

TCONS_00004785-protein (polypeptide) - C. hemisphaerica