TCONS_00004783 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004783
Unique NameTCONS_00004783
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length976

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004783 ID=TCONS_00004783|Name=TCONS_00004783|organism=Clytia hemisphaerica|type=transcript|length=976bp
CATTCTTTGTTAAATATTGAATGAATTCACTGTCGCAACCATTTTTTACG
ctcgatactatcttttttctaTAGTATAGTACAattattttccaaagaaa
gAAAACGATGAACGTTAACTAAAAAGAACACTGATGGTATAATTGCAAAT
TGGGAATaTCTATGTAGTAATAATGTTGCTTGTATCTCAAATCACGATAT
TAATGGTATTATATTTTGGAGTGATTTATTATTTCCAAATGAGTAAGATA
CAACAAGATTTCAACAATGAACAGATTTCTATTTGCTTTGCAATCACCTT
AAAAGCGATCCCCCATTCACCTGTACCTAAAGAATGTCTAGACATGAAGC
CAGGCTCTACCATTTTTGACGCAATGAAAATATTACAAGAGAAACCATGC
CACAACTTTACCTACCGTTTATTTGACTTCAAAGGAGTTTTCATTGACAG
TCTATGTGGCATTCCAAACAATGAAACGCTGCATTTTCATTGGTTTTATT
acgtcaatgacgtcatcggtagTGTCAGTGTTTCGAAGTATTACCTTAAG
CCTTTTGACGATATTAGTTTTGTGTATCGAGTCGGAGCTCATCCACATCA
ACATAATTCACCAAAGGAAGACAGAGCTATAAATTAACCTGAGATAAGAT
GGATAAGACAGAAAATTCGTCCCTTGCTTGACATAGGAAATCTTAGCCCG
TACCATcactcaaaattttcaattgattttttaattccAAATGCGTGACA
CATCTCAACTAATAATGAAATGCCAATCGGGAGTTATCTGTGCTAATACG
TCCAGACCTGCCGGTACATAACCGAGATATCAAGCGTTCTCGTATGATGT
GGTTGGCACCTAATACTTAATCAGAATTTTCCTTAAGGAAATCCTATTCG
GAGTTTGTGGGAAGGAATAGATTTGAATGGATGGTAATGTTATGCGACGA
TATAAACTTTCGATCAagtatatacc
Run BLAST on NCBI

protein sequence of TCONS_00004783-protein

>TCONS_00004783-protein ID=TCONS_00004783-protein|Name=TCONS_00004783-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
MLLVSQITILMVLYFGVIYYFQMSKIQQDFNNEQISICFAITLKAIPHSP
VPKECLDMKPGSTIFDAMKILQEKPCHNFTYRLFDFKGVFIDSLCGIPNN
ETLHFHWFYYVNDVIGSVSVSKYYLKPFDDISFVYRVGAHPHQHNSPKED
RAIN
Run BLAST on NCBI

transcript from alignment at sc0000048:183802..186248-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004783 ID=TCONS_00004783|Name=TCONS_00004783|organism=Clytia hemisphaerica|type=transcript|length=2447bp|location=Sequence derived from alignment at sc0000048:183802..186248- (Clytia hemisphaerica)
CATTCTTTGTTAAATATTGAATGAATTCACTGTCGCAACCATTTTTTACG
CTCGATACTATCTTTTTTCTATAGTATAGTACAGTAAGTAGTTTTGATTG
TGTTTTTTTTTCTGACGAGACGCGTTCATGTTCTGATAAAAACTTTAACA
TTCTCATACGTTTATCATGGAGTAGAATGATAGTCTATATGTTCTTATAA
CATTCCCGGCTATACTAAGAGATTTCTTTGAAATTCTAATACAAATTGAA
ATAGTAAAATAGTAATTTCGCAGGAATATGTTATCTTCACAGTTTCAAGT
TACGAATTCAAATACTAGATTATTTTCCAAAGAAAGAAAACGATGAACGT
TAACTAAAAAGAACACTGATGGTATAATTGCAAATTGGGAATGTAGGTTT
TATTTATTTCTTTGAATTCTTGAAGAAGATGTTGTTTTTTTCGGTGAACA
CTTCTTACAGCCTTGTACCTGTGTATCGCAGGGTTTATTACGTTTCTGAT
AGATACTGAGGATGTAGTCGTACCGGGTGTCCCAGAAAAAAGTCCCCCTC
TTTGAAGTGAAATTTCTCGAGTTCTATGAACTGTTAAAGAAGTTAACCAA
ATTTGACAAACAACCCCTCAAAATTTAAGTTTATCCTTCCTCTTACCAAT
GCAAAAGGATTGATTCTTTAAAAGTTCATGGAACTCGAGAAATTTCACTT
CAAAGAGGGGGACTTTTTTCTGGGACACCCGGTATCTTTTCTCAAACAAT
TAACATAGAAAAGCTGGTAATACCCTGGGTACGAGGTTGCACTTCGTCTA
ATGATAAAAAAGATTCTAAGAATCGAGATATCTTGATAGTTTTTTTTCAT
TAGAATACAATTTCCACATCTGTGAACTAAGGAGCCATCTGAGAGAACTT
TTCATTCAAAACTTTTCATTCAAAACTTTTAAAAAACAGCTCTGAAAAGT
TTTTCACTCTACCAATTCTTTTTCTTCTTTCAGATCTATGTAGTAATAAT
GTTGCTTGTATCTCAAATCACGATATTAATGGTATTATATTTTGGAGTGA
TTTATTATTTCCAAATGAGTAAGATACAACAAGATTTCAACAATGAACAG
GTATAAACATTGATAATCCTAAAGTCAATTTTGTTTGATATGTGTATATA
TGTAAATACACAATATTTATCAATAGGTAGTATCATTCCCGGGGGGGATA
GTGGGTTTACCAATTGACGGTATGTGCGGCGAAGAAATTGGCTTTAAGAA
TCGCACCCTTACAGTGCAGCAAAAAATTGGTAAGATTCATACCCTTCTTT
ACAGTGCATTTTTCTCAAATTTTCAACTCTTTCAGATCAACGAAATCAGA
ATTTCGGGAAAAGATTTTCAACAATCTTTCCTGGATTTGCCGAAATTCCA
TCCTTAAAATTCCATCCGCACATTCTCGTCGGTCAGTTCAGAGGTCGAGG
AAATATGTACATATTTTTTCTTTTATTATAAGCATAACGTTTATTACTTT
ATAAGCATATGCAGGCTCAGTTTTTGGTACCTAAACAAACGCTTTATTGT
TTGAGAATAATAGAATGCTAAGCATAATGCAAGCCTGACATAGGGGCAGA
CACTTGTTTATAAAAGAAAACATGTATGGGTTGAGGATATAATGAGGATG
AGGATGTTTTTTATAATTCATCATCTCTGGACATTTGTCTTTTGACTGGC
TGAATTTCTTCTCATTGAATTTATTATTTTTCCATTGTTATTTAGATTTC
TATTTGCTTTGCAATCACCTTAAAAGCGATCCCCCATTCACCTGTACCTA
AAGAATGTCTAGACATGAAGCCAGGCTCTACCATTTTTGACGCAATGAAA
ATATTACAAGAGAAACCATGCCACAACTTTACCTACCGTTTATTTGACTT
CAAAGGAGTTTTCATTGACAGTCTATGTGGCATTCCAAACAATGAAACGC
TGCATTTTCATTGGTTTTATTACGTCAATGACGTCATCGGTAGTGTCAGT
GTTTCGAAGTATTACCTTAAGCCTTTTGACGATATTAGTTTTGTGTATCG
AGTCGGAGCTCATCCACATCAACATAATTCACCAAAGGAAGACAGAGCTA
TAAATTAACCTGAGATAAGATGGATAAGACAGAAAATTCGTCCCTTGCTT
GACATAGGAAATCTTAGCCCGTACCATCACTCAAAATTTTCAATTGATTT
TTTAATTCCAAATGCGTGACACATCTCAACTAATAATGAAATGCCAATCG
GGAGTTATCTGTGCTAATACGTCCAGACCTGCCGGTACATAACCGAGATA
TCAAGCGTTCTCGTATGATGTGGTTGGCACCTAATACTTAATCAGAATTT
TCCTTAAGGAAATCCTATTCGGAGTTTGTGGGAAGGAATAGATTTGAATG
GATGGTAATGTTATGCGACGATATAAACTTTCGATCAAGTATATACC

Coding sequence (CDS) from alignment at sc0000048:183802..186248-

>TCONS_00004783 ID=TCONS_00004783|Name=TCONS_00004783|organism=Clytia hemisphaerica|type=CDS|length=930bp|location=Sequence derived from alignment at sc0000048:183802..186248- (Clytia hemisphaerica)
ATTTCTATTTGCTTTGCAATCACCTTAAAAGCGATCCCCCATTCACCTGT
ACCTAAAGAATGTCTAGACATGAAGCCAGGCTCTACCATTTTTGACGCAA
TGAAAATATTACAAGAGAAACCATGCCACAACTTTACCTACCGTTTATTT
GACTTCAAAGGAGTTTTCATTGACAGTCTATGTGGCATTCCAAACAATGA
AACGCTGCATTTTCATTGGTTTTATTACGTCAATGACGTCATCGGTAGTG
TCAGTGTTTCGAAGTATTACCTTAAGCCTTTTGACGATATTAGTTTTGTG
TATCGAGTCGGAGCTCATCCACATCAACATAATTCACCAAAGGAAGACAG
AGCTATAAATTAAATGTTGCTTGTATCTCAAATCACGATATTAATGGTAT
TATATTTTGGAGTGATTTATTATTTCCAAATGAGTAAGATACAACAAGAT
TTCAACAATGAACAGATTTCTATTTGCTTTGCAATCACCTTAAAAGCGAT
CCCCCATTCACCTGTACCTAAAGAATGTCTAGACATGAAGCCAGGCTCTA
CCATTTTTGACGCAATGAAAATATTACAAGAGAAACCATGCCACAACTTT
ACCTACCGTTTATTTGACTTCAAAGGAGTTTTCATTGACAGTCTATGTGG
CATTCCAAACAATGAAACGCTGCATTTTCATTGGTTTTATTACGTCAATG
ACGTCATCGGTAGTGTCAGTGTTTCGAAGTATTACCTTAAGCCTTTTGAC
GATATTAGTTTTGTGTATCGAGTCGGAGCTCATCCACATCAACATAATTC
ACCAAAGGAAGACAGAGCTATAAATTAAATGTTGCTTGTATCTCAAATCA
CGATATTAATGGTATTATATTTTGGAGTGATTTATTATTTCCAAATGAGT
AAGATACAACAAGATTTCAACAATGAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002704XLOC_002704Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004783-proteinTCONS_00004783-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004783-exon-sc0000048-1575043694:186166..186248TCONS_00004783-exon-sc0000048-1575043694:186166..186248Clytia hemisphaericaexon
TCONS_00004783-exon-sc0000048-1575043694:185857..185930TCONS_00004783-exon-sc0000048-1575043694:185857..185930Clytia hemisphaericaexon
TCONS_00004783-exon-sc0000048-1575043694:185149..185265TCONS_00004783-exon-sc0000048-1575043694:185149..185265Clytia hemisphaericaexon
TCONS_00004783-exon-sc0000048-1575043694:183802..184503TCONS_00004783-exon-sc0000048-1575043694:183802..184503Clytia hemisphaericaexon
TCONS_00004783-exon-sc0000048-1510915933:186166..186248TCONS_00004783-exon-sc0000048-1510915933:186166..186248Clytia hemisphaericaexon
TCONS_00004783-exon-sc0000048-1510915933:185857..185930TCONS_00004783-exon-sc0000048-1510915933:185857..185930Clytia hemisphaericaexon
TCONS_00004783-exon-sc0000048-1510915933:185149..185265TCONS_00004783-exon-sc0000048-1510915933:185149..185265Clytia hemisphaericaexon
TCONS_00004783-exon-sc0000048-1510915933:183802..184503TCONS_00004783-exon-sc0000048-1510915933:183802..184503Clytia hemisphaericaexon
TCONS_00004783-exon-sc0000048-1491911889:186166..186248TCONS_00004783-exon-sc0000048-1491911889:186166..186248Clytia hemisphaericaexon
TCONS_00004783-exon-sc0000048-1491911889:185857..185930TCONS_00004783-exon-sc0000048-1491911889:185857..185930Clytia hemisphaericaexon
TCONS_00004783-exon-sc0000048-1491911889:185149..185265TCONS_00004783-exon-sc0000048-1491911889:185149..185265Clytia hemisphaericaexon
TCONS_00004783-exon-sc0000048-1491911889:183802..184503TCONS_00004783-exon-sc0000048-1491911889:183802..184503Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000048supercontigsc0000048:183802..186248 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.231276	0.225531	0.261863	0.30743	0.686155	0.936543	4.46013	4.17552	2.65053	2.0278	2.85863	2.1564	6.30639	5.27135	5.64703	7.44127	3.99321	3.4167	7.37555	6.4831	2.63861	2.22502	2.7048	3.61626	2.53277	4.03333	4.3129	1.42147	0.564736	0.784605
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027954DUF4430
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004783 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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