TCONS_00004782 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004782
Unique NameTCONS_00004782
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2347

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004782 ID=TCONS_00004782|Name=TCONS_00004782|organism=Clytia hemisphaerica|type=transcript|length=2347bp
TCTTCCCTTGGTTGTAAACAGCCTGCAAACTTTGAGTCGTTTTTCTCTTG
AAATCTTCCGTAGAAACGTCAACATTTTGAGGAATTCGAAGAACCATCTT
GGTTAGTTTGTCATTATTAACTGGTAACGCGCTTGGTAATATTTGAACTG
GTATCGATGTTGATGTTTTGATACTTGATGAGCTGATTAAAACTATGATT
TGTGACGAAGATGTCTGATGAAGATTAACCCTCGTGGTTGTAGCAGGGCT
TTGTGATTCGATGCTTTTCTCTGAACTTTCAAATACAGCTGAAGTTGGTA
TATTGTGTACAAAACTGGTGGGTTCTATCAATATCAGTGTCGATGAAGGT
TCCAGATCGACCTTGAATGAAGAAACTTCAGGGCTAATATTACTTGAAAA
ATCCATAACTTTCTTGGAACTTTGGAGTAAGGATGAACTCGATGAACCGC
CTAATACAAATGTTGAGTGTTCTGCTCTTTTTGAAGTTGTTGGTAATGAT
GAGTCATGGGAAACGAGTATACTATCTGATTGTTGAATTGATGCAACATT
GGTTGATGTTGTTTCGGAAGTTGAAAAACTATTCAAGACATTGGTATTTA
TTGATGAATACATGTTTGATATTAATGTTAATGTTGCCAATGCTTCTGAG
CTCTTCATTTGTGACGGAATCATGGAGGATTTCCCTACTGAGGATATCGA
GCTTGAGATTTTATTTGTTGACACAGTAGATAAAAGTTGAGTATAGAAAG
TCGAAAATACAGGAGTCTTCTGTAAAGTATGTGATTGTTCTATGTCAATA
GATGATCTAATGCTGGACAATGATACATCAACTGATACGGTGAATAAGGA
AGCAGATGCTTGGACTAACTCTGTCAATAATGTTATTGATTCAAATGCTT
CATAGTTGGATGAAAGAGGAAGATTAGAAAATGAAGAACTACTGGTTTCC
AAGCTAGAATAAAGTAAGGTTTCTGAGTTTTCAATAAATTCACTTATCAT
TTTTGAAGAAGTAAAGACTGACGATGACGTATCAGTTGATATCAAATTTA
GTTGACTTGAAATGATGAAGGAggaatcaaaatttgaagacGAAACGATT
TCTGATGCTTGGGAACTTTGGATATCTGATTCCTCCATTATAGAAGATTT
GGTTTCCAAAAAGTTACTTTGACTTGCTGTAAATCTTGGCAAATATGTTA
CTGTAGAAACAGATTCATTGACCATAGaagagaaaattgaaacattttcg
aTCAATGGTGTGCTAGTTTTGGTCAGTGATTCTGTCTTGGTAAAAGTTAT
TGAGTCCACAATAATGTTGGATGTTATGACTGATGAAAGTTGCATTTgag
ttgaaaatgaagatgagtCTGGATACTGTATCGATGTTGTTGATGAAGAA
AGATTTGGCGAATTTTCTGATAGTGTCTTTGATTGTGTTCCTCTTGATTG
ACTTGAGACATCAATGTTACTAGATAAAAATTGTGTTCCGCTTGCTTGAC
TGGAGACATCAATGTTACTGGATAAAGATTGTGTTCCGCTTGATTGACTG
GAGACATCAATGTTACTAGATAAGGATTGTGTATAATGCGTCAATATTTG
TGAGCTTGATTCTTGGTTCATTAACGAAGCCATTGCTGGTGTTGAGAATG
ATACTTCTGTTGTTAGTGACGGTAAATTCTTTATCGTAAGAGAGCTTAAA
GGGTTGAATTGGTCTGAAATAGTACTAATAATGATTGAGCTATCACTAAC
GGGTAATgtgtttgaaaatgttgaatgAAGTTTGGATTGcgtagaaaatt
tttgtaaaatggtTTCTGATCTATACGTAGACAATTGCTCAGAGATGGTA
ACAGGTGTTGTTACTATTCCAGAATTATCCAGCGAATTATCTATAGTGGA
TTCGCTGGGGCCGATGATTGATGTTGACCCTTCTGACATCGTTGTGAATG
TATTTGAAGGAGCTAAAGTTGTTGGCTGTTTAAGATTATCAACCGATGTC
AAAACACCAGAATTTTGTGTACTCCATGAAAACGATTCGTGTTGGTTAGA
CTTAGAGGAGATAAATGATGATGCAGATGCAATTGAAGTTTTATCAAACA
TCAACACAGTCCATATTGTTATGATGATGGtggaaattttcataattttt
tattttgcaggGTCTTCTCTCATCTGAAAAAAGTAGAATAAGAAAAAACA
TATTACTAAAGGATTTCTTAACCTATGAATTAAGTCTAAAAGTCTTCATT
TCCTTAGCCTGAAAAAGTTTTATCTATTCGTAAGTCATCTATATAAAGAG
TCTATTTGAGATTGCCTGTTGTTGACCAAAACATTTATTAGGTTTTT
Run BLAST on NCBI

transcript from alignment at sc0000048:153507..155949-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004782 ID=TCONS_00004782|Name=TCONS_00004782|organism=Clytia hemisphaerica|type=transcript|length=2443bp|location=Sequence derived from alignment at sc0000048:153507..155949- (Clytia hemisphaerica)
TCTTCCCTTGGTTGTAAACAGCCTGCAAACTTTGAGTCGTTTTTCTCTTG
AAATCTTCCGTAGAAACGTCAACATTTTGAGGAATTCGAAGAACCATCTT
GGTTAGTTTGTCATTATTAACTGGTAACGCGCTTGGTAATATTTGAACTG
GTATCGATGTTGATGTTTTGATACTTGATGAGCTGATTAAAACTATGATT
TGTGACGAAGATGTCTGATGAAGATTAACCCTCGTGGTTGTAGCAGGGCT
TTGTGATTCGATGCTTTTCTCTGAACTTTCAAATACAGCTGAAGTTGGTA
TATTGTGTACAAAACTGGTGGGTTCTATCAATATCAGTGTCGATGAAGGT
TCCAGATCGACCTTGAATGAAGAAACTTCAGGGCTAATATTACTTGAAAA
ATCCATAACTTTCTTGGAACTTTGGAGTAAGGATGAACTCGATGAACCGC
CTAATACAAATGTTGAGTGTTCTGCTCTTTTTGAAGTTGTTGGTAATGAT
GAGTCATGGGAAACGAGTATACTATCTGATTGTTGAATTGATGCAACATT
GGTTGATGTTGTTTCGGAAGTTGAAAAACTATTCAAGACATTGGTATTTA
TTGATGAATACATGTTTGATATTAATGTTAATGTTGCCAATGCTTCTGAG
CTCTTCATTTGTGACGGAATCATGGAGGATTTCCCTACTGAGGATATCGA
GCTTGAGATTTTATTTGTTGACACAGTAGATAAAAGTTGAGTATAGAAAG
TCGAAAATACAGGAGTCTTCTGTAAAGTATGTGATTGTTCTATGTCAATA
GATGATCTAATGCTGGACAATGATACATCAACTGATACGGTGAATAAGGA
AGCAGATGCTTGGACTAACTCTGTCAATAATGTTATTGATTCAAATGCTT
CATAGTTGGATGAAAGAGGAAGATTAGAAAATGAAGAACTACTGGTTTCC
AAGCTAGAATAAAGTAAGGTTTCTGAGTTTTCAATAAATTCACTTATCAT
TTTTGAAGAAGTAAAGACTGACGATGACGTATCAGTTGATATCAAATTTA
GTTGACTTGAAATGATGAAGGAGGAATCAAAATTTGAAGACGAAACGATT
TCTGATGCTTGGGAACTTTGGATATCTGATTCCTCCATTATAGAAGATTT
GGTTTCCAAAAAGTTACTTTGACTTGCTGTAAATCTTGGCAAATATGTTA
CTGTAGAAACAGATTCATTGACCATAGAAGAGAAAATTGAAACATTTTCG
ATCAATGGTGTGCTAGTTTTGGTCAGTGATTCTGTCTTGGTAAAAGTTAT
TGAGTCCACAATAATGTTGGATGTTATGACTGATGAAAGTTGCATTTGAG
TTGAAAATGAAGATGAGTCTGGATACTGTATCGATGTTGTTGATGAAGAA
AGATTTGGCGAATTTTCTGATAGTGTCTTTGATTGTGTTCCTCTTGATTG
ACTTGAGACATCAATGTTACTAGACAAAGATGGTGTTCCGCTTGCTTGAC
TGGAGACATCAATGTTACTAGATAAAAATTGTGTTCCTCTTGATTGACTC
GAGACATCAATGTTACTAGATAAAAATTGTGTTCCGCTTGCTTGACTGGA
GACATCAATGTTACTGGATAAAGATTGTGTTCCGCTTGATTGACTGGAGA
CATCAATGTTACTAGATAAGGATTGTGTATAATGCGTCAATATTTGTGAG
CTTGATTCTTGGTTCATTAACGAAGCCATTGCTGGTGTTGAGAATGATAC
TTCTGTTGTTAGTGACGGTAAATTCTTTATCGTAAGAGAGCTTAAAGGGT
TGAATTGGTCTGAAATAGTACTAATAATGATTGAGCTATCACTAACGGGT
AATGTGTTTGAAAATGTTGAATGAAGTTTGGATTGCGTAGAAAATTTTTG
TAAAATGGTTTCTGATCTATACGTAGACAATTGCTCAGAGATGGTAACAG
GTGTTGTTACTATTCCAGAATTATCCAGCGAATTATCTATAGTGGATTCG
CTGGGGCCGATGATTGATGTTGACCCTTCTGACATCGTTGTGAATGTATT
TGAAGGAGCTAAAGTTGTTGGCTGTTTAAGATTATCAACCGATGTCAAAA
CACCAGAATTTTGTGTACTCCATGAAAACGATTCGTGTTGGTTAGACTTA
GAGGAGATAAATGATGATGCAGATGCAATTGAAGTTTTATCAAACATCAA
CACAGTCCATATTGTTATGATGATGGTGGAAATTTTCATAATTTTTTATT
TTGCAGGGTCTTCTCTCATCTGAAAAAAGTAGAATAAGAAAAAACATATT
ACTAAAGGATTTCTTAACCTATGAATTAAGTCTAAAAGTCTTCATTTCCT
TAGCCTGAAAAAGTTTTATCTATTCGTAAGTCATCTATATAAAGAGTCTA
TTTGAGATTGCCTGTTGTTGACCAAAACATTTATTAGGTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002703XLOC_002703Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004782-exon-sc0000048-1575043694:154491..155949TCONS_00004782-exon-sc0000048-1575043694:154491..155949Clytia hemisphaericaexon
TCONS_00004782-exon-sc0000048-1575043694:153507..154394TCONS_00004782-exon-sc0000048-1575043694:153507..154394Clytia hemisphaericaexon
TCONS_00004782-exon-sc0000048-1510915933:154491..155949TCONS_00004782-exon-sc0000048-1510915933:154491..155949Clytia hemisphaericaexon
TCONS_00004782-exon-sc0000048-1510915933:153507..154394TCONS_00004782-exon-sc0000048-1510915933:153507..154394Clytia hemisphaericaexon
TCONS_00004782-exon-sc0000048-1491911889:154491..155949TCONS_00004782-exon-sc0000048-1491911889:154491..155949Clytia hemisphaericaexon
TCONS_00004782-exon-sc0000048-1491911889:153507..154394TCONS_00004782-exon-sc0000048-1491911889:153507..154394Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000048supercontigsc0000048:153507..155949 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0994948	0.0347899	0.0307213	1.01756	0.484466	0.446136	0.323065	0	0	0.042574	0	0	0	0	0	0	0	0.0996483	0.0328933	0.0794349	0.105738	0.0326112	0	0	0.045093	0.240123	0	0.0455503	0.0426762
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004782 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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