TCONS_00004775 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004775
Unique NameTCONS_00004775
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2403

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004775 ID=TCONS_00004775|Name=TCONS_00004775|organism=Clytia hemisphaerica|type=transcript|length=2403bp
attttcatttcgACACTTCAAGGCATACGATTAGCatcagaaaagaaatt
ttttgaatttttaactttatggttgaaatttattttgactaTACAATTAA
AGCTTCGGTTAATTAGTTAGTCATTaggattttatgatattttttgagtg
ttatttgaaattaaacatttcAAAGAAATCATGAAAACAACAAAGAAATC
AAGATCAGGGAAGATGTCACTGGGTTCCAATGAAGCTAAGGAGGCAGTTG
CAACACTTCGTGATCGTTTGAAACATGGGCAAAACATGACCAAGATATTG
GAATCACAACTGGATACAGCGCAACAGAATATAAGTTTATTGCAAGGGCA
AGTGCGTTTAGCCAACGAAACCATTTTGAACTTGAAGAAATATTTCACCG
AAACGGAGAACACTTTGAATGATTTGTTTACATCGAATCATTCCTCAAGA
AGTTTTCAATACAATGATGGTGCTACAAAGGAGCAATCAGATATggataa
aaatcaacaaatgtCGAAAGTTGCTCGAGGTTCTACTAGATCACCAAGAA
CACCAGAGTCGATGGATACTAAGACACACCATGACGACAAACGCAGGGAG
CGTGAGCACAACAACAAATCACCATACGCACAACAATTACGTCAAGTTCT
GGATGCTCTACAAGACGAAGAGCCGAAGAAATCTTCACACACTCATCATC
GTTTACACGAGAAAACAGAACCTTCAGAACACAGTCCATCACCTCCGCCT
GCAGACCGTCGTTTGATGCAGGCTACAAAACATTATCACCATGAGAATGA
AGGTGGTGCCTTTCAAAGACGACAACCTCATCCAGAAGAGGACTATCCAA
AGATGAAACACCATAAAATGAACGGTCATCCTTCAAGAGAATCAACCAAT
GGGAACCATCATGACCCAATCTCCCCTAAACCATCCTATTATCAACAACA
CCATTCTAATGAGTTGTCACACGGTCATCATCAGCCACATCCTCATAGCA
ACCATTGCATGGGACCATGTTGTCCCAGCGAAACGCCACCATCAAGCTAC
AAAATGATGGAGAAATCATATCATTATGGTTCAGATGAAAAACCGACACA
CTATGTGGAGAAATCACCAAATGGAGGTGTTCACTATattgctgtacatt
caccagagaGCACTACCAGCTCTGGCAAACATGGCGAAAGACATCATAGT
CATCATTATGTTCCTTATGCTTACCACATCCCTGGTGAGAATCCACATAA
AATGATACACGAAATGCCACCGCAACCACTTTCACCGACAACCAACAGTG
GTGGTGGGCGCCGAAAGAGGGCGTACGCCCCATTGTTACCAAATGAAGAA
CCACCACATTTGAAATACACCAAAGTGAAGCGAATCGATGGTAGCAAGTT
GACAGCACAAAAAGTCCTCCAAGATTTCACAAAGAGGCGATTCATTGCTT
ATAATCCACGATACGATTTGGACTTATTAATTGTTCCTCCGCCCATCCCT
GCATCAGACCTCCTCAAGGGCGGTCATCAATTCAAAGGAACTGAACAAAA
AATGACCAACATTCGATCTCCAGTAGCCTCACcacaagaaaacaaaattc
aaagcGAACGTCGATCAACAATTTACGGAAAACCATCCAATGAGAGTCAC
TCCGATAAAGAGGACGAGGAAGTTTTTACGGAACCGAGAAGTCCTCTTGA
TGACGCAAACAATAATAATCACCATGACGataacaacaacaataacaaaa
ctGTAAATAATAATTCATGGCCGCACAAGCCACAAATATATTCAGGGAAA
GGTGTCTCTGTGTTACCAAGCATCAAAGAGGAGCCGAGGAGCAATAAATT
GGAAGATCAGATTAATAAGTTGAGACATGATCAAGAAGCGAATACGATTC
CAGCCGTCTACCGACAACAAGACAGTCCTTACAGTGATACCAACAATAAT
AACGAAAACAGTCCCATGGTGGTCAGAGAGAATGCAGCTTCGCCGATTCC
TATTGTTAGACGTACCGAACAGTATTGCAGTTAGAAATGCGtttccattt
tttccatttctaaaaactaaaaattttgaatttgtagTGAGTTTAGCGCG
TCTTTATGTTAAATTTTGTAATCCTTAGGCTCGAAGTGGAGGTGTATTTA
CTTTACAGAGCAGAAGATAGATTAATCTTTGTATCAATGGTGATTTTTTT
GTCACGTTGTCTTGTTGCATTTGGAGATTGGATTATAAAGCCAGTTGCTT
TTGTTATTGTATATCCTCATTAAAAAAcgtaaatttttgaaactttgttg
atatttttcctCTTCTTTTTGTATAGTTTACTAGATAGatataattttga
aagtttttggatGATTAGACaactttgaaaatattgataaataaataatt
cat
Run BLAST on NCBI

transcript from alignment at sc0000048:126098..131518-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004775 ID=TCONS_00004775|Name=TCONS_00004775|organism=Clytia hemisphaerica|type=transcript|length=5421bp|location=Sequence derived from alignment at sc0000048:126098..131518- (Clytia hemisphaerica)
ATTTTCATTTCGACACTTCAAGGCATACGATTAGCATCAGAAAAGAAATT
TTTTGAATTTTTAACTTTATGGTTGAAATTTATTTTGACTATACAATTAA
AGCTTCGGTTAATTAGTTAGTCATTAGGATTTTATGATATTTTTTGAGTG
TTATTTGAAATTAAACATTTCAAAGAAATCATGAAAACAACAAAGAAATC
AAGATCAGGGTAATTATCGAGAATTTATAATTTTTATTGTTTTTCATTAA
TTACGATTGAAGGCCCTGTAAAGTAAAGTGTTCTTCTAAATGATGAATTT
CAGTTTTCATTTTCAAGAATTTCAGCTTTGATAGGAGGTTGGTACAGTAT
CAAATTTTTATAAAATTTTAAAATTACAAATCAACAGAGCGCAGTAGAGA
TTGTTTTTAAAACATTTTAAATTAATGAAAATTGAGACTTCAATAGCGAG
ACGACACAGTCAAAAAAATTTTCTCCGTTTTTTTTTTAGATGTGTTGTGT
CCGTTCTTGATTACTTGTATGCCATTGCACAATCACATTCATTTTGTCAT
TCTATGCGAGCCTGATTAACATTTCTCTTTGTTCTTTTCTGTTTTGATTG
GCTGAAAGCCGAGTTGACATACTGTAATGCTTTTTTTGTTGATATAGCTA
TTTGAACTTTTTTAATAAATTGCGGATATGTGATTTTATAAGCATACTTT
AAGTAATAATCTCAATTCAAGAGGTCTCTAATAAATGCTTTACGGTAGAT
GTACAGGAGTATTTTTAGGTCTTAAACTCAAACGTTTGAGAACATCCACA
GGTTTAACATACCTACTTCTCACAGTCACATTGGAAACCCTTCCCATTGG
GAAAATTGGCCAATATATCGTCCCCAGTGGAATTATACACTAATTCTTGT
CCGCGCTGAAAATAATCCGATAAGCAAATCCTCACTGCAACGTATATTGT
GCTAATTTTTCAATTCCCACTGAATTTTTGGCTCGAAAAATATGGAATTA
TCCTACCCGGCCTATGAACTATGAGAAGGGAGTGTCTTAACAATTTCAGA
TGTTCTTATAAAGAACATGTACTCATTAACTAAAGGAGATGTACTGTGTC
AGTTTACATTTCTCGTGATTGACTTCAAATTGAATTTCAGCCTGTTGTTT
CAAGTGTTTAAAAAGTCACCCCAAGGTCATCAGCTATTTAATTTTGAACG
TATTGAAATAAAACTCTTCCGTGAAGAAACAAGTACTATCTCTTAATTTC
TGTGCCCGATGGAGGAGCTTACACGTTTTTTTTTATAAGAACAAACTATA
TAAGAACATAAGGCTTCGAGGCCCAAAAATTTAAGAACATTCTAAGGCTT
TGGAGACTTAAAAGCATGCATTTTCTTAAAAAATTACATCAAAATGCTCA
AAAAATGCTGAAAATAAGAACATTTTAAGAACATTTTTAGGCTTCAAATC
CAAAAAACTAAGAACATCCGAAGGCTTCGAAAATTTTTGACGTTCTTATA
AAAAAAAAAACGTGTATAAGGACATGGAAAATTCTTTTAACCTGTTGGAT
GATCCTTAACAAAATATTCCTATTTTAACCAACTTGTGAGAATTTCTCTC
TCATTTCCTACGAAATTGCATGCTCGAGAGTTCGCAAAGCATTGTATTCT
CCTAGAATACACCCTGTGTCACAGACCTGGTGGGACCCCCTACCCACTGG
AAAACTTGGCTAAAATTTCGTCTCCGGTGGGAAAATACCCTACAATTTCA
GCACCACTCGAAAATTGACTTAGTTTTCAAAAATTGCAGTCCAAAACCTT
TCGATTTTTTGACCTGAAAACAATAGATTTTCTATCCCGATTTGGATTTT
GATAGAAATTTTCATCCCCAATGTGGAAAGAAGTTCCTTCGGGGCTGCAG
GGCAAGGTTAAACACTCTTGGGTTTTAAAACTATTGCCTTGAAGCCTATT
ACACTTATATATACTTTGTTCTTTATGAAACGAATGCTAAACAAATGATA
ATCAAAAGCAATAGCCTGAACAATGAAAACACTCATAAAAGTCTTTGTTT
ACCACTGGCCAATCAGAGAGGCTTTTGCTTTAAATTTCAGCTGTCAAACC
GTTTCAGCTGGAATGTTATCTGATTCTCCCAACAAGTTTTGACATGTATG
AAGTAGATTTTCTTTAAATAGAAACTGAGTTACATCACCTTCAATAAATG
ACATTGTATATCTCCTTAATTTTTACCCTTCCTTCATTAAGCCACTAGTT
GAAGTGTCCTCAAGTGTTTTTTGTCTCACAGCATTGCAAGCATACTTAAA
TGTCTCGTTTTTCTGTACCAATTGCCAAATGAGAGGTCAAGTTTCACGTG
TTCAAGTTTTCATACCCCTCCTCTTACCTTTATGGAGGCTTCCATGAATT
GCGTGAATGGGCGGATTTTGTTGTGTGAATGGGCGGCTTTTGTTGCGTGG
ATTTTTAGTTCGTTTTCTCTTCTCCATATACCTCAAAACACTCGTTGTAG
CTTTGAAACAGGCCGTACATGAACCAGTGAGTATGTCTACGTCGCTATAT
AGACATTCAATTTCTTCGCATATTGAACCAAGTGTTAATGAAATCGAAGA
ATAGTCAATCATGTGATTAGTTAATTCAAACTCCATTCAGCTCCATACTA
CTTACAAAACAATTCATACATTTGTCGTAAACATAAAATTACAGCTTATC
AAAACTTCAATTTTCTCACCGCACATATTCTGAGTTTATCCAAACCTTAC
ATCGATATTTATCTAAAATACCAGCTGATCTTACAAAGGTTGTAAAGGCT
TCAATTTAATAAGGCTCTCTAAACTGCAAAATTTAATGAAGCCTCTAAAA
GTGCCATTATAAGAATTGACAAACGAACAAAATAACTAAATTGAAGCTAT
TTTTTGTCCTTTCATAGGAAGATGTCACTGGGTTCCAATGAAGCTAAGGA
GGCAGTTGCAACACTTCGTGATCGTTTGAAACATGGGCAAAACATGACCA
AGATATTGGAATCACAACTGGATACAGCGCAACAGAATATAAGTTTATTG
CAAGGGCAAGTGCGTTTAGCCAACGAAACCATTTTGAACTTGAAGAAATA
TTTCACCGAAACGGAGAACACTTTGAATGATTTGTTTACATCGAATCATT
CCTCAAGAAGTTTTCAATACAATGATGGTGCTACAAAGGAGCAATCAGAT
ATGGATAAAAATCAACAAATGTCGAAAGTTGCTCGAGGTTCTACTAGATC
ACCAAGAACACCAGAGTCGATGGATACTAAGACACACCATGACGACAAAC
GCAGGGAGCGTGAGCACAACAACAAATCACCATACGCACAACAATTACGT
CAAGTTCTGGATGCTCTACAAGACGAAGAGCCGAAGAAATCTTCACACAC
TCATCATCGTTTACACGAGAAAACAGAACCTTCAGAACACAGTCCATCAC
CTCCGCCTGCAGACCGTCGTTTGATGCAGGCTACAAAACATTATCACCAT
GAGAATGAAGGTGGTGCCTTTCAAAGACGACAACCTCATCCAGAAGAGGA
CTATCCAAAGATGAAACACCATAAAATGAACGGTCATCCTTCAAGAGAAT
CAACCAATGGGAACCATCATGACCCAATCTCCCCTAAACCATCCTATTAT
CAACAACACCATTCTAATGAGTTGTCACACGGTCATCATCAGCCACATCC
TCATAGCAACCATTGCATGGGACCATGTTGTCCCAGCGAAACGCCACCAT
CAAGCTACAAAATGATGGAGAAATCATATCATTATGGTTCAGATGAAAAA
CCGACACACTATGTGGAGAAATCACCAAATGGAGGTGTTCACTATATTGC
TGTACATTCACCAGAGAGCACTACCAGCTCTGGCAAACATGGCGAAAGAC
ATCATAGTCATCATTATGTTCCTTATGCTTACCACATCCCTGGTGAGAAT
CCACATAAAATGATACACGAAATGCCACCGCAACCACTTTCACCGACAAC
CAACAGTGGTGGTGGGCGCCGAAAGAGGGCGTACGCCCCATTGTTACCAA
ATGAAGAACCACCACATTTGAAATACACCAAAGTGAAGCGAATCGATGGT
AGCAAGTTGACAGCACAAAAAGTCCTCCAAGGTATACCTACTTTTCAATA
TTTCTTTCTTTCTCTTTTTAAACTGTTAACGATCGAAGAAACAACAAAAT
ACAACAATTCAAACATTCAACATCGAAGAATTGTTATTTCTATCCTTTCT
ATCCTTACTTGAAATTAAGGGACAATCTTAATTAGTATAAAGTTTACGTG
GGGCTATTATCTGAATATTAAGATATAAAGCAACATTTTCAAATTTAACA
GTCTACTTTCAGAGTTATTTTTCAACCAGACTTGATTTGACCAGAACATT
GATACAGGAGAATATATATTTTTATTTGCTTTTTGTTTCAGATTTCACAA
AGAGGCGATTCATTGCTTATAATCCACGATACGATTTGGACTTATTAATT
GTTCCTCCGCCCATCCCTGCATCAGACCTCCTCAAGGGCGGTCATCAATT
CAAAGGAACTGAACAAAAAATGACCAACATTCGATCTCCAGTAGCCTCAC
CACAAGAAAACAAAATTCAAAGCGAACGTCGATCAACAATTTACGGAAAA
CCATCCAATGAGAGTCACTCCGATAAAGAGGACGAGGAAGTTTTTACGGA
ACCGAGAAGTCCTCTTGATGACGCAAACAATAATAATCACCATGACGATA
ACAACAACAATAACAAAACTGTAAATAATAATTCATGGCCGCACAAGCCA
CAAATATATTCAGGGAAAGGTGTCTCTGTGTTACCAAGCATCAAAGAGGA
GCCGAGGAGCAATAAATTGGAAGATCAGATTAATAAGTTGAGACATGATC
AAGAAGCGAATACGATTCCAGCCGTCTACCGACAACAAGACAGTCCTTAC
AGTGATACCAACAATAATAACGAAAACAGTCCCATGGTGGTCAGAGAGAA
TGCAGCTTCGCCGATTCCTATTGTTAGACGTACCGAACAGTATTGCAGTT
AGAAATGCGTTTCCATTTTTTCCATTTCTAAAAACTAAAAATTTTGAATT
TGTAGTGAGTTTAGCGCGTCTTTATGTTAAATTTTGTAATCCTTAGGCTC
GAAGTGGAGGTGTATTTACTTTACAGAGCAGAAGATAGATTAATCTTTGT
ATCAATGGTGATTTTTTTGTCACGTTGTCTTGTTGCATTTGGAGATTGGA
TTATAAAGCCAGTTGCTTTTGTTATTGTATATCCTCATTAAAAAACGTAA
ATTTTTGAAACTTTGTTGATATTTTTCCTCTTCTTTTTGTATAGTTTACT
AGATAGATATAATTTTGAAAGTTTTTGGATGATTAGACAACTTTGAAAAT
ATTGATAAATAAATAATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002702XLOC_002702Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004775-exon-sc0000048-1575043694:131310..131518TCONS_00004775-exon-sc0000048-1575043694:131310..131518Clytia hemisphaericaexon
TCONS_00004775-exon-sc0000048-1575043694:127388..128601TCONS_00004775-exon-sc0000048-1575043694:127388..128601Clytia hemisphaericaexon
TCONS_00004775-exon-sc0000048-1575043694:126098..127077TCONS_00004775-exon-sc0000048-1575043694:126098..127077Clytia hemisphaericaexon
TCONS_00004775-exon-sc0000048-1510915933:131310..131518TCONS_00004775-exon-sc0000048-1510915933:131310..131518Clytia hemisphaericaexon
TCONS_00004775-exon-sc0000048-1510915933:127388..128601TCONS_00004775-exon-sc0000048-1510915933:127388..128601Clytia hemisphaericaexon
TCONS_00004775-exon-sc0000048-1510915933:126098..127077TCONS_00004775-exon-sc0000048-1510915933:126098..127077Clytia hemisphaericaexon
TCONS_00004775-exon-sc0000048-1491911889:131310..131518TCONS_00004775-exon-sc0000048-1491911889:131310..131518Clytia hemisphaericaexon
TCONS_00004775-exon-sc0000048-1491911889:127388..128601TCONS_00004775-exon-sc0000048-1491911889:127388..128601Clytia hemisphaericaexon
TCONS_00004775-exon-sc0000048-1491911889:126098..127077TCONS_00004775-exon-sc0000048-1491911889:126098..127077Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000048supercontigsc0000048:126098..131518 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.285074	0	0.691248	0	2.10717	2.48406	0.550806	0.300604	1.11352	0.172184	4.07688	5.95447	1.74857	2.78578	3.63633	1.56135	4.01853	2.48009	2.71714	2.59411	0.762691	1.29567	1.34445	2.26322	2.24314	3.85143	3.72003	4.80729
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004775 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top