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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004756 ID=TCONS_00004756|Name=TCONS_00004756|organism=Clytia hemisphaerica|type=transcript|length=1010bp
ATTTTTACactaatttttttgtttgcattttgtcaactttttgatgttgt
ttgattttttgatagaaaactgattaaaaatttgtttcatcAGATTAAGG
ATGAAGTGAAAATAAAGTCTATTTTAcgcttgtaaaaatattaaattttt
tttcttgattattgaaatattatttGTATTTGGCGAAGTTTTTGGAGTGT
TAAGCATTGGGTCAAAATAGAGTAACCATTATTTAACATGTCTTTGAATG
AAATCCAACTAACACGAGATCAGTATGGAAAACTTCCTTTTCTAACGAAT
TGGTCACGCCATGAGGTAGCAGCAATGGAGAGAAGCTGGCATACAGATCA
TTGGTGTAAAACCAAGCATAAACGGATGACCTTCTTCACCACAGATCAAA
AGAAAACGACCAACTTCTATCCAGGAGAATTTGTGAATCATGAACTCAAA
TCTAAAAAAGAGGGCGAGGACAGCATAACACCACACCATTGCATCGATAC
TGGTACCATGAAACACATTGGAACCATCTCATTCACGCAAATGTTACATC
AGGATTTGAATGGTAAATTGCCTGGTCTCACATCTAAAAGAAATCCATcc
aaaaaattactaaaaacgAAAGCCAATACAAGAGCTAAAGAAGGATTTGA
GTTTTGGTTTAAAGACCCTGAGCCTATGAAACATAaaaacaAGAAATGGA
TTGGTCAGGGAGGCAACGTCATGGGGACCATGTCAAAATAACAGAAATGC
GACGATCTGACATATACCTGGTTTTAAAGAAATTGTAGATAGTAAATTAA
TAACCAAATTTGGATCAAATAGCCGTGTTATATTTGATGCATTGGGTACA
CTAAAGACATGGAGGAACCGAATAATATAGGTCTGTCTCTGATTGCGTTG
AAAAATAcgagaaaaagtaaaaattaaagttgagctttgataattttcat
tgaaCTTCCCGCGGATTGGGGACATGGGGTTGGAGAATGTCGGTTGTAAG
GGAATCGGAC Run BLAST on NCBI protein sequence of TCONS_00004756-protein >TCONS_00004756-protein ID=TCONS_00004756-protein|Name=TCONS_00004756-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
MSLNEIQLTRDQYGKLPFLTNWSRHEVAAMERSWHTDHWCKTKHKRMTFF
TTDQKKTTNFYPGEFVNHELKSKKEGEDSITPHHCIDTGTMKHIGTISFT
QMLHQDLNGKLPGLTSKRNPSKKLLKTKANTRAKEGFEFWFKDPEPMKHK
NKKWIGQGGNVMGTMSK Run BLAST on NCBI transcript from alignment at sc0000048:387596..393202+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004756 ID=TCONS_00004756|Name=TCONS_00004756|organism=Clytia hemisphaerica|type=transcript|length=5607bp|location=Sequence derived from alignment at sc0000048:387596..393202+ (Clytia hemisphaerica)
ATTTTTACactaatttttttgtttgcattttgtcaactttttgatgttgt
ttgattttttgatagaaaactgattaaaaatttgtttcatcAGATTAAGG
ATGAAGTGAAAATAAAGTCTATTTTAcgcttgtaaaaatattaaattttt
tttcttgattattgaaatattatttGTATTTGGCGAAGTTTTTGGAGTGT
TAAGCATTGGGTCAAAATAGAGTAACCATTATTTAACATGTCTTTGAATG
AAATCCAACTAACACGAGATCAGTATGGAAAACTTCCTTTGTAAGTATTG
GTACCCAACTGCACGTCCGTTTCAACGTCCATTACAtgactttttataag
aagaaaaaaattttggctcagACTGGGCTgctctttatttttagaaactt
ttatAGGCTTAAATGCCCGGGGGAGGCACTCAGGCGAACTTAGGAACGGG
GACGTGCCACTGGTCAGGAGGGTCCCTTTTTTATGCTCTCTGAAGGATAT
CTGACAGTGTCCCAAATTTACTACCAAAAAGGGTCGTTGTTTGATTTTTG
AACGATTTTCAGGGtcgaaattagaaaaattagaaaaaatcttttgtcta
catttcgtcgtttttgccatttttcagggtgaaaatgggaattttttttc
gattttccttcCGACAAGGTCCAAAATTTATCAAACATTGAAATCTggca
gggtccacttttcaaactccagcggcacgtccccatcagccgtcaaggtc
agtgctcCCCGAGTTTAAATGTTTCTTGCGATGTTCTTAATatgcttagt
ttctttacttggAAAATTAATTTAGAATCAgtaaaatcagtactttctaA
AATATTAAGCTCGGACGTTTCTTAATTCATTCTTaggttttgataaattt
tcagcCTTGTGATCTTATGaaatcattcttataaaaagaaaagcgtgtaC
ATAAAAACCCTTCATAAAAAAACCCTTCAATTCTAaagaatagaccttat
cggagtttttgatttttctaaaaaagcgatgcattgtgggattgtttcga
gtgtattacaatagaattccctggaggaattcctaagagatttctattgt
aatacactcgaaacaatcccacaatgcatcgcttttttagaaaaataaaa
aactctgataaggtctattcttgacatttttttttcatatacacgttttt
ttataagaacactttaaaataacataaggctttgattaTCAAAAtgttat
aagaacaagttaaggctTTGCCGACTCTAAAAAAGCcggtttcttagaaa
aatgggtaaaactgctcaaaaaatagtgaaaataagaacatcttatgaat
atttttaggcttaaaactcaaaatgttaagaacatctgaaggcttcaaaa
atttcttataaaaagaaaaacgtgtaagaaaatttttataagaataatga
gtCTCAAACACGAGAACAATCTAGGAACAAAGGAtataaagttaagaaca
atctAGAAACAAAGGTGAGCCTGGGATATTTGGTATTTTAAGCAGTTTTA
GAGTCAAAATATCAagcaaggacacttgtatagcgtagctggactgTGTA
CAACGgctatttctctttctctttttaacacATGTCTGTCGTAGCGAATC
TGCGAACCCCGGTCAgcggttgagaatatttttttcaaattaattgaaat
aattagtTGTTGCAAAGTTTATTAGTTTTCATAAGGGACTTTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNATGGCTATAGCAAGATGTCGAACAAGGAACGGAATACATCATACT
ACAGCTGCTAAAAGCAAAATCTAAACATCATtcatgagaaagaaaatttt
ctcttttttaatcatttgatTGTATAAAGGTGTGATAAAACTCATTATAA
AGTAattgttcgattgttgtttTCTTATTATTGCTATCATGTCAAAGGAA
TTTATAAAATATCTTTAGCAACAAACTTTCCGTGCGAATTCCATCTGCCT
GACGATGGTTTTTCATTGTTAAgtacttttattaaaaagtatttctcatt
ggttgaaacACATGAGGAACGACCTCTTATTGGTCAAAGAAAGACAATAT
CTATTATTACGACGACACACATGGttcaaagaaaattaatttgtgctcag
tccagctacgctatacaagtgtccttgtaTCAAGCCACCTCAATTTTGCT
CCAGAAataagaacagaataagaaaAATTTCCGGCTCGAATTGTCAAATC
GTCAAAGATAAGAACAGtcgagcctcaacaaaaattactggctcttattc
atgatatgcaccattgcaatgtcttccacggacccaacagctgattggtt
gtaagtgacataaaatcagtcagtacgtcacttacaaccaatcagctgtt
gggtccgtgatgtaatgtccgaagacattgcaatggtgcatatcatgaat
aacagAATAAGTCTCTGTTACCATGTGAAGTTCTAACTTAGAAGTTTGTT
ATTCCTCTCATATCTTAAAACCATAAAAACACTCCTTTTTAGGAGCAAAA
GTCAACCCTTGTCAAAAtctgattttaaatatttttcctttttcattagT
CTAACGAATTGGTCACGCCATGAGGTAGCAGCAATGGAGAGAAGCTGGCA
TACAGATCATTGGTGTAAAACCAAGCATAAACGGATGACCTTCTTCACCA
CAGATCAAAAGAAAACGACCAACTTCTATCCAGGAGAATTTGTGAATCAT
GAACTCAAATCTAAAAGTGAGTTAACTCTTTTATAACttcctcttctcac
agaccactgggaccccttcgtactgggaaaattggcaaaatatcaccccc
agtggaaaattataccctAAATTATGTCCCAgctgaaaataatcataaaT
AAACCAAGAAACTTAAATAAAAGATATTCTCCTTAATttcctgacttgaa
aacaatggtaTAGAAAACATTGGAATATCAACCACCATCGAGTTCCAGTC
CGGTATTTTTACCCTCATTGGTCCCTGGCTGAaagaatcctaccgggtct
gtgagaaggaggaaGAAACTACTGTATCAACGTTTTGATTGATCAAGCAT
CCCCCCAACAGTTGACACCTTCATACAGCTAAACGAGGCCTAAAATAAAT
CACTAAACATAATGATTACTCTctctaactcgaacctctactattcgaac
ctttctctaattcgaactaaattaTTGGTCCTCATAGGTAGAATTAGTAT
AAGATattactttctataattcgaactaaattaTTGGTCCTCACAGCTAG
AAATTAGTATAAGATattactttctataattcgaactaaattaTTTGTCC
TCACAGCTAGAAATTAGTATTAGATattactttctataattcgaactaaa
ttaTTTGTCCTCACAGCTAGAAATTAGTATAAGATATTACTTTCTCCAAT
TCGAACTAAATTATTGGTCCTCACAGCTAGAAATGAGTATAAGATattac
tttctataattcgaatcttcatctaattcgaagaaaattcttagtccctt
aaagatcgaataagagagagtgAACGGTACTTCTTTCTTACCAGAAGAGG
GCGAGGACAGCATAACACCACACCATTGCATCGATACTGGTACCATGAAA
CACATTGGAACCATCTCATTCACGCAAATGTTACATCAGGATTTGAATGG
TAAATTGCCTGGTCTCACATCTAAAAGAAATCCATccaaaaaattactaa
aaacgAAAGCCAATACAAGAGCTAAAGAAGGATTTGAGTTTTGGTTTAAA
GACCCTGAGCCTATGAAACATAGTAAGTGATTTTGAGCCCTTTATACACC
TTTCCGACCGTATATACCTTTCCGGCCAATTGCCGTCCGCTTTATCcgac
taaaaccgtcccagtcttttttcgcacctacaAACAACAGTAAagtgtgt
caaaaaaggattggatcgagtttagggggataattaaataattaattgGC
ACGCTCCTGACCTATTTGAAAGTTGTCGCTTTTATTCTTATGAACATTAA
TTGCACTAATGATGTACACGATCCTATCGGCTACAAAAGgtcactaaaaa
gggaataatttAAGAGGAGggtcaaatttgaaaatggaattCAGCCCGGG
CGGAGTAAGCAATGGCGGTGGTGTTTACAGTGTTTGTTTCagactctacc
gccacttttttttcccgtaaaccaccCTGACTCTTCGCATATATATTTTC
CCGAgtttactgaccctctaaaGGACGATAGCATTGTCTACTAATGATTC
CAGTTAGTGATTCGAAGGAAAGTTTGTCTAAAACGAGAAAATGataaatt
attacttttcattaCATTATTTTGACGGTATCTAAGGATAATGATTTCTT
CCACATTTGACACCTCTAGATTTCACCTCCTCCTTTCAAAGAACACTCTC
CAGATTTTTCAACCTTGGTAGTAGAGGGGGGGTTTgcacttttacggtgt
gacgggattgacccttttttagtaaggtattacgggatttgacgaaaaaa
gagacgggaaaacggtattttaaaatcagacggtgacggtgtttaggtac
atttttgccctgtacaagccagtgtgacggtgttattattttttcaattt
tcgggattccgggattcagcaaaaattttgacgggaaaatggtattttaa
aatcagacggtgacggtatttaggtacatttttgccctgtacaagccagt
gtgacggtgttattattttttcaattttcggggttccgggattcagcaaa
aattttggccggaaaaattttttttcccccccccccccccagtagACCAT
CTGGTTTAACTCCTTATAATTAGATGAAGCTGAAAAtgttcgagaaaaaa
aataacagtGGAGACTGAGCCAATTTCCTTTTGTATTACTTTACCGAGGA
AATAATAGAACCCAAAaagttttctcctgtcagaaagtcaaaaatttgGT
TGAAAGTAAAAATTGTTGGAGAACATACTATTATTGAGGAAGTTTTCTTT
TTACTCACCGCATgtatatcttttttctttagaaaacaAGAAATGGATTG
GTCAGGGAGGCAACGTCATGGGGACCATGTCAAAATAACAGAAATGCGAC
GATCTGACATATACCTGGTTTTAAAGAAATTGTAGATAGTAAATTAATAA
CCAAATTTGGATCAAATAGCCGTGTTATATTTGATGCATTGGGTACACTA
AAGACATGGAGGAACCGAATAATATAGGTCTGTCTCTGATTGCGTTGAAA
AATAcgagaaaaagtaaaaattaaagttgagctttgataattttcattga
aCTTCCCGCGGATTGGGGACATGGGGTTGGAGAATGTCGGTTGTAAGGGA
ATCGGAC Coding sequence (CDS) from alignment at sc0000048:387596..393202+ >TCONS_00004756 ID=TCONS_00004756|Name=TCONS_00004756|organism=Clytia hemisphaerica|type=CDS|length=2016bp|location=Sequence derived from alignment at sc0000048:387596..393202+ (Clytia hemisphaerica)
ATGTCTTTGAATGAAATCCAACTAACACGAGATCAGTATGGAAAACTTCC
TTTTCTAACGAATTGGTCACGCCATGAGGTAGCAGCAATGGAGAGAAGCT
GGCATACAGATCATTGGTGTAAAACCAAGCATAAACGGATGACCTTCTTC
ACCACAGATCAAAAGAAAACGACCAACTTCTATCCAGGAGAATTTGTGAA
TCATGAACTCAAATCTAAAAAAGAGGGCGAGGACAGCATAACACCACACC
ATTGCATCGATACTGGTACCATGAAACACATTGGAACCATCTCATTCACG
CAAATGTTACATCAGGATTTGAATGGTAAATTGCCTGGTCTCACATCTAA
AAGAAATCCATccaaaaaattactaaaaacgAAAGCCAATACAAGAGCTA
AAGAAGGATTTGAGTTTTGGTTTAAAGACCCTGAGCCTATGAAACATAaa
aacaAGAAATGGATTGGTCAGGGAGGCAACGTCATGGGGACCATGTCAAA
ATAAATGTCTTTGAATGAAATCCAACTAACACGAGATCAGTATGGAAAAC
TTCCTTTTCTAACGAATTGGTCACGCCATGAGGTAGCAGCAATGGAGAGA
AGCTGGCATACAGATCATTGGTGTAAAACCAAGCATAAACGGATGACCTT
CTTCACCACAGATCAAAAGAAAACGACCAACTTCTATCCAGGAGAATTTG
TGAATCATGAACTCAAATCTAAAAAAGAGGGCGAGGACAGCATAACACCA
CACCATTGCATCGATACTGGTACCATGAAACACATTGGAACCATCTCATT
CACGCAAATGTTACATCAGGATTTGAATGGTAAATTGCCTGGTCTCACAT
CTAAAAGAAATCCATccaaaaaattactaaaaacgAAAGCCAATACAAGA
GCTAAAGAAGGATTTGAGTTTTGGTTTAAAGACCCTGAGCCTATGAAACA
TAaaaacaAGAAATGGATTGGTCAGGGAGGCAACGTCATGGGGACCATGT
CAAAATAAATGTCTTTGAATGAAATCCAACTAACACGAGATCAGTATGGA
AAACTTCCTTTTCTAACGAATTGGTCACGCCATGAGGTAGCAGCAATGGA
GAGAAGCTGGCATACAGATCATTGGTGTAAAACCAAGCATAAACGGATGA
CCTTCTTCACCACAGATCAAAAGAAAACGACCAACTTCTATCCAGGAGAA
TTTGTGAATCATGAACTCAAATCTAAAAAAGAGGGCGAGGACAGCATAAC
ACCACACCATTGCATCGATACTGGTACCATGAAACACATTGGAACCATCT
CATTCACGCAAATGTTACATCAGGATTTGAATGGTAAATTGCCTGGTCTC
ACATCTAAAAGAAATCCATccaaaaaattactaaaaacgAAAGCCAATAC
AAGAGCTAAAGAAGGATTTGAGTTTTGGTTTAAAGACCCTGAGCCTATGA
AACATAaaaacaAGAAATGGATTGGTCAGGGAGGCAACGTCATGGGGACC
ATGTCAAAATAAATGTCTTTGAATGAAATCCAACTAACACGAGATCAGTA
TGGAAAACTTCCTTTTCTAACGAATTGGTCACGCCATGAGGTAGCAGCAA
TGGAGAGAAGCTGGCATACAGATCATTGGTGTAAAACCAAGCATAAACGG
ATGACCTTCTTCACCACAGATCAAAAGAAAACGACCAACTTCTATCCAGG
AGAATTTGTGAATCATGAACTCAAATCTAAAAAAGAGGGCGAGGACAGCA
TAACACCACACCATTGCATCGATACTGGTACCATGAAACACATTGGAACC
ATCTCATTCACGCAAATGTTACATCAGGATTTGAATGGTAAATTGCCTGG
TCTCACATCTAAAAGAAATCCATccaaaaaattactaaaaacgAAAGCCA
ATACAAGAGCTAAAGAAGGATTTGAGTTTTGGTTTAAAGACCCTGAGCCT
ATGAAACATAaaaacaAGAAATGGATTGGTCAGGGAGGCAACGTCATGGG
GACCATGTCAAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004756-exon-sc0000048-1491911889:387596..387885 | TCONS_00004756-exon-sc0000048-1491911889:387596..387885 | Clytia hemisphaerica | exon |
| TCONS_00004756-exon-sc0000048-1510915933:387596..387885 | TCONS_00004756-exon-sc0000048-1510915933:387596..387885 | Clytia hemisphaerica | exon |
| TCONS_00004756-exon-sc0000048-1575043694:387596..387885 | TCONS_00004756-exon-sc0000048-1575043694:387596..387885 | Clytia hemisphaerica | exon |
| TCONS_00004756-exon-sc0000048-1491911889:390395..390561 | TCONS_00004756-exon-sc0000048-1491911889:390395..390561 | Clytia hemisphaerica | exon |
| TCONS_00004756-exon-sc0000048-1510915933:390395..390561 | TCONS_00004756-exon-sc0000048-1510915933:390395..390561 | Clytia hemisphaerica | exon |
| TCONS_00004756-exon-sc0000048-1575043694:390395..390561 | TCONS_00004756-exon-sc0000048-1575043694:390395..390561 | Clytia hemisphaerica | exon |
| TCONS_00004756-exon-sc0000048-1491911889:391390..391617 | TCONS_00004756-exon-sc0000048-1491911889:391390..391617 | Clytia hemisphaerica | exon |
| TCONS_00004756-exon-sc0000048-1510915933:391390..391617 | TCONS_00004756-exon-sc0000048-1510915933:391390..391617 | Clytia hemisphaerica | exon |
| TCONS_00004756-exon-sc0000048-1575043694:391390..391617 | TCONS_00004756-exon-sc0000048-1575043694:391390..391617 | Clytia hemisphaerica | exon |
| TCONS_00004756-exon-sc0000048-1491911889:392878..393202 | TCONS_00004756-exon-sc0000048-1491911889:392878..393202 | Clytia hemisphaerica | exon |
| TCONS_00004756-exon-sc0000048-1510915933:392878..393202 | TCONS_00004756-exon-sc0000048-1510915933:392878..393202 | Clytia hemisphaerica | exon |
| TCONS_00004756-exon-sc0000048-1575043694:392878..393202 | TCONS_00004756-exon-sc0000048-1575043694:392878..393202 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000048 | supercontig | sc0000048:387596..393202 + |
Blast
The following BLAST results are available for this feature:
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