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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004747 ID=TCONS_00004747|Name=TCONS_00004747|organism=Clytia hemisphaerica|type=transcript|length=1644bp
GTGAAGAACAACTGAAAATATAGAAACGAAACTTAGTGGAAAAGGATaaa
aaatttcaaggaaaaaagGAGATTATAAATCACTTCAACAACGACATCAT
CGCCGCACACCATCAACCACCCAATCACACGCACGCACGCAGTTAGATAA
AACATGGTTGTAACGATGGCAAcacaaaaacaattcaataataacaataa
tggttATGCACAACATCGAAAATTAGCGATCAAGAAAGTATTATCTGAAC
TACCGAACGTCCCTGAGCGAGTTGTTTACAATTACACGATATACAAACGA
GTAGAACAAACCTTTGGTATTTCGATTGTTGGAGGGCTTGGTACGTTACT
TCGTGGCATCTACGTCAAAACAGTTTCACAGAGAGGCGCTTGTGGGATTG
ATGGAAGCATCAAAGTTGGAGATCAAATCATGATGTTGAACGGTCACTGT
CTCCGTGAAACAACACACGAACAAGCTGTCCAATGGTTCCGTGAAGCCAA
ATCTAAAATGGAAGTTGTCGTCTCACGAATGGTCGAAAGCAAACTACAAA
AAGATCAACAAGGTCACCTATCACCGTACCAGGGACGTTTGTTTACAGCC
AACCCTGACAGATGGAGTGAAGAACCGATCATTCTAGAACATAAATGTAT
ACATCGTTGACGTGAAGTGGTTGGGAAAGTTTGTCAAGTAAAGTTATTGA
GATGCTATCGACTGTCTGGTACGAAGTTTGTCTACACAATAGACGAATTC
AGGCTTCAGGCTCTTGACCTAGAGCAACTATCGAGAAAAAGGAACTAAAT
CGAAATTAGTCAAATTCAAAATCTCtttgtttgaaaagaaaatctttcat
aATCTCGTACTCTGGGAATTCAAAGAAAGCAAAGATATTGGAAAAGAGAA
cttttacatgtttaaaattCGTAAAAACTGAACGCATTTTGGGTGTATCA
CTCGCTGAAAGGTTTTATTATACGAAATAGACTCTTAAAATAAGGCTGAC
TCCACATAGAAGTATTGTGGAAATTCTTAATTATCATTTATAGAAAATAA
AAGTAATATTTATTTTGtactaaaaatatttcattgaaaaatattataac
aATTAATTAATTTTGTACATATGTTAATATTAAATAATATTAAATgacaa
aatatgaaatattccAAAAGTCCTTTGTAATACCAACACCAAGTCTTTCC
GGCGAAAGTACAgagtgtcccaaaaaaagcggacacatttttacataagt
aaaatcctcataatttatAAGGAATTTTATGCCTTGTCGTATTTAaaatt
tcaatctcaaaaaaccttttaattaTCTTGGGAATTAAATATCTATTGAC
TGAACAGAGAATTTTAGTgttatttcaattattctaagcccagttaaaat
gatgaattttgaggattttattaCTATATATAGAAATTTATCTGCTTTTT
TGGGACCCATTGTATTATAATCCCAGTCCTTTAGTTCGGTGAACATGAAA
TAATTTCTGGAACATAATCATATAGAAATTaacgattttgaaatttttaa
agcgACTTCTTAAAATACCGGTAGTCTCCAAACTGTAAGCAGAACAGAAc
caatttcatatttcaatttcttcaaaactttCGAGGGaatctac Run BLAST on NCBI protein sequence of TCONS_00004747-protein >TCONS_00004747-protein ID=TCONS_00004747-protein|Name=TCONS_00004747-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
MVVTMATQKQFNNNNNGYAQHRKLAIKKVLSELPNVPERVVYNYTIYKRV
EQTFGISIVGGLGTLLRGIYVKTVSQRGACGIDGSIKVGDQIMMLNGHCL
RETTHEQAVQWFREAKSKMEVVVSRMVESKLQKDQQGHLSPYQGRLFTAN
PDRWSEEPIILEHKCIHR Run BLAST on NCBI transcript from alignment at sc0000048:179933..183000+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004747 ID=TCONS_00004747|Name=TCONS_00004747|organism=Clytia hemisphaerica|type=transcript|length=3068bp|location=Sequence derived from alignment at sc0000048:179933..183000+ (Clytia hemisphaerica)
GTGAAGAACAACTGAAAATATAGAAACGAAACTTAGTGGAAAAGGATaaa
aaatttcaaggaaaaaagGAGATTATAAATCACTTCAACAACGACATCAT
CGCCGCACACCATCAACCACCCAATCACACGCACGCACGCAGTTAGATAA
AACATGGTTGTAACGATGGCAAcacaaaaacaattcaataataacaataa
tggttATGGTAAGATATTTTTCATCTCATCCCCTTCATTTgattatttga
agatattttgagGCCGATTGACACATTGCATATTTGTTTTAAAGANTTTT
TCATCTCATCCCCTTCATCTgattatttgaagatattttgagGCCGATTG
ACACATTGCATATttgttttaaagaatatttttgaagccctcggatgttc
ttaactttttgagttttcaacctaaaatcttaaaatgttcttatattcaC
AAATTTGTGtgtacacgttgttttttataagaacatgcaaaatttttgag
gcctctagatgttcttaactttttttaattttaagcctaaaactgttctt
aaaatgttctcattttgaccattttttgagtattttgaaACACTCCATTC
TGTATTGCTGAGACATTAGTGGACTGATTGGGCAAACTATATCCACTGAA
AAGTTTACGTCGTGATTATACacattgaaattgtttttatctTTCCCTCA
ACAGCACAACATCGAAAATTAGCGATCAAGAAAGTATTATCTGAACTACC
GAACGTCCCTGAGCGAGTTGTTTACAATTACACGATATACAAACGAGTAG
AACAAACCTTTGGTATTTCGATTGTTGGAGGGCTTGGTACGTTACTTCGT
GGCATCTACGTCAAAACAGTTTCACAGAGAGGCGCTTGTGGGATTGATGG
AAGCATCAAAGTTGGTAAGTGTTCTGTTGGTTGATCTTCAGATTAAACCT
AAAAACagggaaattttagaataagtTTCTAGGAGATGGTGTCATTTAAA
TCGTAATATACTATAGTTGGAAGGAAGTATGGCTTAGCCTAATAAAGATA
ATCATTTCAAAAAGTAACCTGTGCTATAAACACCTTCTTACCACGGTAAA
GTTGGACTGTAGTCGCATATGTCGTACActcttttatttataagaagaac
tttataagaacaacgagtctcaaaaatgctgaaaaataagAACGAGTTAA
GAACAATGCTCAGTCAAGAATGACTTAATTTTATGCAATACGAGcatcaa
agtagtaaaaataggGTAAAAAGCCTAAAAACCTCTAAACTTCCTTTCCT
TTAAGAACAGTATAACAACGATTTAAGGCTCAACGCGTGCTaaaataata
agaacatccgagcctcaaaaaaaatgttcttataaaaagagagTGCATCT
CATCTATGGAATACTGTACAAATCTTACCCTGAGAATGTCTTTAAATTCA
ACAGGAGATCAAATCATGATGTTGAACGGTCACTGTCTCCGTGAAACAAC
ACACGAACAAGCTGTCCAATGGTTCCGTGAAGCCAAATCTAAAATGGAAG
TTGTCGTCTCACGAATGGTCGAAAGCAAACTACAAAAAGgtcagaaaaaa
atgaaatttatacCAGCTCAAATTTTATATGAGCCTTACGCTGACAAAAT
AGCTTGAGAACAGTATACAGTGTGTTCgacaaaaaaaccaaaacaaaatt
tatataCGATGTAAACTCTCTGGTTCTTATATTCCGGTAAAttgctttct
ttctcaaaaCCCTGTCGAATTACCTTGCCTAAAAAATGGAGTTTCATTCT
GTGTGATAATAGTTCAAATCTTAATTAATTAATAAGATACAAGATTTTCT
GACTTATCATTTAAACGAATTGTAGGAAATAAGTACTTTATCCGGGCTAG
ATAAAGCAACAGCGAATATCGATAATTTTGCTTTATaatgaaaagtttgt
ttaccTTTTCCTATCTTTCGTTTTTAGATCAACAAGGTCACCTATCACCG
TACCAGGGACGTTTGTTTACAGCCAACCCTGACAGATGGAGTGAAGAACC
GATCATTCTAGAACATAAATGTATACATCGTTGACGTGAAGTGGTTGGGA
AAGTTTGTCAAGTAAAGTTATTGAGATGCTATCGACTGTCTGGTACGAAG
TTTGTCTACACAATAGACGAATTCAGGCTTCAGGCTCTTGACCTAGAGCA
ACTATCGAGAAAAAGGAACTAAATCGAAATTAGTCAAATTCAAAATCTCt
ttgtttgaaaagaaaatctttcataATCTCGTACTCTGGGAATTCAAAGA
AAGCAAAGATATTGGAAAAGAGAActtttacatgtttaaaattCGTAAAA
ACTGAACGCATTTTGGGTGTATCACTCGCTGAAAGGTTTTATTATACGAA
ATAGACTCTTAAAATAAGGCTGACTCCACATAGAAGTATTGTGGAAATTC
TTAATTATCATTTATAGAAAATAAAAGTAATATTTATTTTGtactaaaaa
tatttcattgaaaaatattataacaATTAATTAATTTTGTACATATGTTA
ATATTAAATAATATTAAATgacaaaatatgaaatattccAAAAGTCCTTT
GTAATACCAACACCAAGTCTTTCCGGCGAAAGTACAgagtgtcccaaaaa
aagcggacacatttttacataagtaaaatcctcataatttatAAGGAATT
TTATGCCTTGTCGTATTTAaaatttcaatctcaaaaaaccttttaattaT
CTTGGGAATTAAATATCTATTGACTGAACAGAGAATTTTAGTgttatttc
aattattctaagcccagttaaaatgatgaattttgaggattttattaCTA
TATATAGAAATTTATCTGCTTTTTTGGGACCCATTGTATTATAATCCCAG
TCCTTTAGTTCGGTGAACATGAAATAATTTCTGGAACATAATCATATAGA
AATTaacgattttgaaatttttaaagcgACTTCTTAAAATACCGGTAGTC
TCCAAACTGTAAGCAGAACAGAAccaatttcatatttcaatttcttcaaa
actttCGAGGGaatctac Coding sequence (CDS) from alignment at sc0000048:179933..183000+ >TCONS_00004747 ID=TCONS_00004747|Name=TCONS_00004747|organism=Clytia hemisphaerica|type=CDS|length=2028bp|location=Sequence derived from alignment at sc0000048:179933..183000+ (Clytia hemisphaerica)
ATGGTTGTAACGATGGCAAcacaaaaacaattcaataataacaataatgg
ttATGCACAACATCGAAAATTAGCGATCAAGAAAGTATTATCTGAACTAC
CGAACGTCCCTGAGCGAGTTGTTTACAATTACACGATATACAAACGAGTA
GAACAAACCTTTGGTATTTCGATTGTTGGAGGGCTTGGTACGTTACTTCG
TGGCATCTACGTCAAAACAGTTTCACAGAGAGGCGCTTGTGGGATTGATG
GAAGCATCAAAGTTGGAGATCAAATCATGATGTTGAACGGTCACTGTCTC
CGTGAAACAACACACGAACAAGCTGTCCAATGGTTCCGTGAAGCCAAATC
TAAAATGGAAGTTGTCGTCTCACGAATGGTCGAAAGCAAACTACAAAAAG
ATCAACAAGGTCACCTATCACCGTACCAGGGACGTTTGTTTACAGCCAAC
CCTGACAGATGGAGTGAAGAACCGATCATTCTAGAACATAAATGTATACA
TCGTTGAATGGTTGTAACGATGGCAAcacaaaaacaattcaataataaca
ataatggttATGCACAACATCGAAAATTAGCGATCAAGAAAGTATTATCT
GAACTACCGAACGTCCCTGAGCGAGTTGTTTACAATTACACGATATACAA
ACGAGTAGAACAAACCTTTGGTATTTCGATTGTTGGAGGGCTTGGTACGT
TACTTCGTGGCATCTACGTCAAAACAGTTTCACAGAGAGGCGCTTGTGGG
ATTGATGGAAGCATCAAAGTTGGAGATCAAATCATGATGTTGAACGGTCA
CTGTCTCCGTGAAACAACACACGAACAAGCTGTCCAATGGTTCCGTGAAG
CCAAATCTAAAATGGAAGTTGTCGTCTCACGAATGGTCGAAAGCAAACTA
CAAAAAGATCAACAAGGTCACCTATCACCGTACCAGGGACGTTTGTTTAC
AGCCAACCCTGACAGATGGAGTGAAGAACCGATCATTCTAGAACATAAAT
GTATACATCGTTGAATGGTTGTAACGATGGCAAcacaaaaacaattcaat
aataacaataatggttATGCACAACATCGAAAATTAGCGATCAAGAAAGT
ATTATCTGAACTACCGAACGTCCCTGAGCGAGTTGTTTACAATTACACGA
TATACAAACGAGTAGAACAAACCTTTGGTATTTCGATTGTTGGAGGGCTT
GGTACGTTACTTCGTGGCATCTACGTCAAAACAGTTTCACAGAGAGGCGC
TTGTGGGATTGATGGAAGCATCAAAGTTGGAGATCAAATCATGATGTTGA
ACGGTCACTGTCTCCGTGAAACAACACACGAACAAGCTGTCCAATGGTTC
CGTGAAGCCAAATCTAAAATGGAAGTTGTCGTCTCACGAATGGTCGAAAG
CAAACTACAAAAAGATCAACAAGGTCACCTATCACCGTACCAGGGACGTT
TGTTTACAGCCAACCCTGACAGATGGAGTGAAGAACCGATCATTCTAGAA
CATAAATGTATACATCGTTGAATGGTTGTAACGATGGCAAcacaaaaaca
attcaataataacaataatggttATGCACAACATCGAAAATTAGCGATCA
AGAAAGTATTATCTGAACTACCGAACGTCCCTGAGCGAGTTGTTTACAAT
TACACGATATACAAACGAGTAGAACAAACCTTTGGTATTTCGATTGTTGG
AGGGCTTGGTACGTTACTTCGTGGCATCTACGTCAAAACAGTTTCACAGA
GAGGCGCTTGTGGGATTGATGGAAGCATCAAAGTTGGAGATCAAATCATG
ATGTTGAACGGTCACTGTCTCCGTGAAACAACACACGAACAAGCTGTCCA
ATGGTTCCGTGAAGCCAAATCTAAAATGGAAGTTGTCGTCTCACGAATGG
TCGAAAGCAAACTACAAAAAGATCAACAAGGTCACCTATCACCGTACCAG
GGACGTTTGTTTACAGCCAACCCTGACAGATGGAGTGAAGAACCGATCAT
TCTAGAACATAAATGTATACATCGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004747-exon-sc0000048-1491911889:179933..180140 | TCONS_00004747-exon-sc0000048-1491911889:179933..180140 | Clytia hemisphaerica | exon |
| TCONS_00004747-exon-sc0000048-1510915933:179933..180140 | TCONS_00004747-exon-sc0000048-1510915933:179933..180140 | Clytia hemisphaerica | exon |
| TCONS_00004747-exon-sc0000048-1575043694:179933..180140 | TCONS_00004747-exon-sc0000048-1575043694:179933..180140 | Clytia hemisphaerica | exon |
| TCONS_00004747-exon-sc0000048-1491911889:180637..180846 | TCONS_00004747-exon-sc0000048-1491911889:180637..180846 | Clytia hemisphaerica | exon |
| TCONS_00004747-exon-sc0000048-1510915933:180637..180846 | TCONS_00004747-exon-sc0000048-1510915933:180637..180846 | Clytia hemisphaerica | exon |
| TCONS_00004747-exon-sc0000048-1575043694:180637..180846 | TCONS_00004747-exon-sc0000048-1575043694:180637..180846 | Clytia hemisphaerica | exon |
| TCONS_00004747-exon-sc0000048-1491911889:181387..181521 | TCONS_00004747-exon-sc0000048-1491911889:181387..181521 | Clytia hemisphaerica | exon |
| TCONS_00004747-exon-sc0000048-1510915933:181387..181521 | TCONS_00004747-exon-sc0000048-1510915933:181387..181521 | Clytia hemisphaerica | exon |
| TCONS_00004747-exon-sc0000048-1575043694:181387..181521 | TCONS_00004747-exon-sc0000048-1575043694:181387..181521 | Clytia hemisphaerica | exon |
| TCONS_00004747-exon-sc0000048-1491911889:181910..183000 | TCONS_00004747-exon-sc0000048-1491911889:181910..183000 | Clytia hemisphaerica | exon |
| TCONS_00004747-exon-sc0000048-1510915933:181910..183000 | TCONS_00004747-exon-sc0000048-1510915933:181910..183000 | Clytia hemisphaerica | exon |
| TCONS_00004747-exon-sc0000048-1575043694:181910..183000 | TCONS_00004747-exon-sc0000048-1575043694:181910..183000 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000048 | supercontig | sc0000048:179933..183000 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001478 | PDZ |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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