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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004724 ID=TCONS_00004724|Name=TCONS_00004724|organism=Clytia hemisphaerica|type=transcript|length=2345bp
tttttacatatgaactttcaattttgataaaataaaagacgtgttttttg
ttttgacccATAACAATACAACAAACCGTGAGCGAACGAGAGCTATTAAA
AAACaactgaccaatcaaaacgctttATTCACCCAGCAACCAATCAGATG
TCGAATAGAGGAATAGAGAAAATTATGTTGAGAAACGTTGCATGCTATaa
atataaatacaaaaaaagcaTGTTAATTCAAGCGGGCTTTTACTATTGAA
CGTATTTCATATTATCACGAAGTTTGTCGACAGACGTTCGTTCGGTTGAG
TGTCCAAACTAGAGGcgagagagaaagaaaaaaaagaggcgttcaaattt
tcaaaacattttagaGAAAGATCATTCTACCAGCATTTGAACAACCCTGT
ATTTCTCTCAACTCTTTGGTCTTTGGTACACCAAGCCTCAGGAACAGACA
TACATTTAGAATCTGGGTCAACGTGGAAATTTAGCATTTCAAAACGTGAC
GTGGCTTGCTGAGATCGACCGGAATCAACACGCTTTGATCAAGAAAAGAT
TGAGAAGATCTTTCGCAATCATCATTTTTGTTGTTACTGTAGAAAGCACT
TGAAAATCCTATACCACTTTATAAAGAGACGAAATTGCTGATTTGGAGTG
TTGTGATCATTTAAACGACAGATTAGAAAGGTGAAGGAGAAATTTCATCA
TATAGGAAAGACTTAGTACAAATAACATCATTTATCGCTTTTGGGATTTG
CTCAGATAATTTCCTTCGCTGACATCGTTGAAtataaagaaaacttttta
tatTATTATTCCTGAGTGAGAGGTACAAACAAGAACCGAGACTCAATTTA
TTATCATTATCGCccatttctatttgtttttgatatctttgatcgcgacc
ttgaaaaaaaaagttgttgttTGGGTACCCAGTACtttatttgactatca
aaattatcaaataatCGTATAAAAGAGAAACACGTTGATTTAAATGAGCA
ATATGCAAGTACATCAATCGAGGACAACTTTGGAGGAGAATTTTGTGTTT
GGTTCACCACCTCTTTTGAACGGATTTTCATACAACTCGTGCCGTGCTCA
AGAAAGTGCTAACCAGGATTGTAACTACTACGAATCCGGTCAAACAGACA
TGTCTTACTGTCATCATCCATCCAAATATGGTAACTCCAGAACCACTTAC
TCTGGCTTACCAATGAAAACTGGTGGAGCTAATTCATCCTCGATGTTGGA
TAGTTTGAATCAATTGTATTTGAATGGCAACAGACCGTACCATAACGAGA
ACAGTAGAAAAATCTTGGAACAAGCTGGCCTTAAAATGCAACAacagcaa
aatttcaacaacaatAACTCTTTGAACAGCAgtccaaaaaattttgaact
tgtCTTTAAAAAACGTAAAGATTTAAGAGTATTGAAATCTGTTTTGTCGA
CTGAGAGATTCCGGAAAGTCACAATGATGTTTGGTGGAGGAGATGAACAT
GGGCGTGAAATTGTTGAATCTGTACATAACTCAATGCGCAAATCAAATAC
TGGTTCCATGTGTTGTCTATTCTGTAATACTGAGTCTCAAGTTTACGAAA
ATTTCCCAATCGTTGATGGGACATTGTTTTTATCACCTGTCAAATTATCA
CAGAACTGTATAAGCTTTGTTGATGATAAAGTGAGTGATGGACCCTCGGC
CTCTCCGACCCCTCAGCGTCACATGTGTTTTATCTGTGTCAGCTGCTTGG
AAGGTAAACCTAATAAACTACAATGCTCAAGTTGTTATTCACCCTGGAAT
GGGTCTTTTTTCCAAGTTGGCACTCTATACTCTTATAACATTTTATCAGC
TATTCCTTGCTGCGAGGCTCGAGTGAAATGTAAAAACTGTCATAAATCGA
TTATTGACTGGAATAATGGTGATGCAACAACTCTGttcttttcacatttt
tcatcaTCAGCGGTCTGTCCACACTGTAATGTTGAAGACTTTCATTACGT
CAAGCCCCTTGACACATTacgaaaattgaatttttggtaaaaggTTTTAA
ATATATTTCAGTGGCGAATGTCTTTGATGTGGGGGAAAAAAGAAGATTAG
ATTTTATGTATAGCTTTTTGACCCTTTTTTCCCTCATTTTCAATGTtgat
atattatatatttttactttcgttcacggaaaaatggacttttttgaaaa
caaaaatcaaattttgtacaagaaaaaaatcgaatgtgCCGAGAattaaa
acagaaaaatgaatAATGTATTTCCTTGTGTTTTTCCCTTCTCTTAAGCG
TTAGCTTTTATATAAAGACACAAACTAAACCTGCTTGCCTAGGTG Run BLAST on NCBI protein sequence of TCONS_00004724-protein >TCONS_00004724-protein ID=TCONS_00004724-protein|Name=TCONS_00004724-protein|organism=Clytia hemisphaerica|type=polypeptide|length=348bp
MSNMQVHQSRTTLEENFVFGSPPLLNGFSYNSCRAQESANQDCNYYESGQ
TDMSYCHHPSKYGNSRTTYSGLPMKTGGANSSSMLDSLNQLYLNGNRPYH
NENSRKILEQAGLKMQQQQNFNNNNSLNSSPKNFELVFKKRKDLRVLKSV
LSTERFRKVTMMFGGGDEHGREIVESVHNSMRKSNTGSMCCLFCNTESQV
YENFPIVDGTLFLSPVKLSQNCISFVDDKVSDGPSASPTPQRHMCFICVS
CLEGKPNKLQCSSCYSPWNGSFFQVGTLYSYNILSAIPCCEARVKCKNCH
KSIIDWNNGDATTLFFSHFSSSAVCPHCNVEDFHYVKPLDTLRKLNFW Run BLAST on NCBI transcript from alignment at sc0000047:670442..672786 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004724 ID=TCONS_00004724|Name=TCONS_00004724|organism=Clytia hemisphaerica|type=transcript|length=2345bp|location=Sequence derived from alignment at sc0000047:670442..672786 (Clytia hemisphaerica)
CACCTAGGCAAGCAGGTTTAGTTTGTGTCTTTATATAAAAGCTAACGCTT
AAGAGAAGGGAAAAACACAAGGAAATACATTattcatttttctgttttaa
tTCTCGGcacattcgatttttttcttgtacaaaatttgatttttgttttc
aaaaaagtccatttttccgtgaacgaaagtaaaaatatataatatatcaA
CATTGAAAATGAGGGAAAAAAGGGTCAAAAAGCTATACATAAAATCTAAT
CTTCTTTTTTCCCCCACATCAAAGACATTCGCCACTGAAATATATTTAAA
AccttttaccaaaaattcaattttcgtAATGTGTCAAGGGGCTTGACGTA
ATGAAAGTCTTCAACATTACAGTGTGGACAGACCGCTGAtgatgaaaaat
gtgaaaagaaCAGAGTTGTTGCATCACCATTATTCCAGTCAATAATCGAT
TTATGACAGTTTTTACATTTCACTCGAGCCTCGCAGCAAGGAATAGCTGA
TAAAATGTTATAAGAGTATAGAGTGCCAACTTGGAAAAAAGACCCATTCC
AGGGTGAATAACAACTTGAGCATTGTAGTTTATTAGGTTTACCTTCCAAG
CAGCTGACACAGATAAAACACATGTGACGCTGAGGGGTCGGAGAGGCCGA
GGGTCCATCACTCACTTTATCATCAACAAAGCTTATACAGTTCTGTGATA
ATTTGACAGGTGATAAAAACAATGTCCCATCAACGATTGGGAAATTTTCG
TAAACTTGAGACTCAGTATTACAGAATAGACAACACATGGAACCAGTATT
TGATTTGCGCATTGAGTTATGTACAGATTCAACAATTTCACGCCCATGTT
CATCTCCTCCACCAAACATCATTGTGACTTTCCGGAATCTCTCAGTCGAC
AAAACAGATTTCAATACTCTTAAATCTTTACGTTTTTTAAAGacaagttc
aaaattttttggacTGCTGTTCAAAGAGTTattgttgttgaaattttgct
gtTGTTGCATTTTAAGGCCAGCTTGTTCCAAGATTTTTCTACTGTTCTCG
TTATGGTACGGTCTGTTGCCATTCAAATACAATTGATTCAAACTATCCAA
CATCGAGGATGAATTAGCTCCACCAGTTTTCATTGGTAAGCCAGAGTAAG
TGGTTCTGGAGTTACCATATTTGGATGGATGATGACAGTAAGACATGTCT
GTTTGACCGGATTCGTAGTAGTTACAATCCTGGTTAGCACTTTCTTGAGC
ACGGCACGAGTTGTATGAAAATCCGTTCAAAAGAGGTGGTGAACCAAACA
CAAAATTCTCCTCCAAAGTTGTCCTCGATTGATGTACTTGCATATTGCTC
ATTTAAATCAACGTGTTTCTCTTTTATACGattatttgataattttgata
gtcaaataaaGTACTGGGTACCCAaacaacaactttttttttcaaggtcg
cgatcaaagatatcaaaaacaaatagaaatggGCGATAATGATAATAAAT
TGAGTCTCGGTTCTTGTTTGTACCTCTCACTCAGGAATAATAatataaaa
agttttctttataTTCAACGATGTCAGCGAAGGAAATTATCTGAGCAAAT
CCCAAAAGCGATAAATGATGTTATTTGTACTAAGTCTTTCCTATATGATG
AAATTTCTCCTTCACCTTTCTAATCTGTCGTTTAAATGATCACAACACTC
CAAATCAGCAATTTCGTCTCTTTATAAAGTGGTATAGGATTTTCAAGTGC
TTTCTACAGTAACAACAAAAATGATGATTGCGAAAGATCTTCTCAATCTT
TTCTTGATCAAAGCGTGTTGATTCCGGTCGATCTCAGCAAGCCACGTCAC
GTTTTGAAATGCTAAATTTCCACGTTGACCCAGATTCTAAATGTATGTCT
GTTCCTGAGGCTTGGTGTACCAAAGACCAAAGAGTTGAGAGAAATACAGG
GTTGTTCAAATGCTGGTAGAATGATCTTTCtctaaaatgttttgaaaatt
tgaacgcctcttttttttctttctctctcgCCTCTAGTTTGGACACTCAA
CCGAACGAACGTCTGTCGACAAACTTCGTGATAATATGAAATACGTTCAA
TAGTAAAAGCCCGCTTGAATTAACAtgctttttttgtatttatatttATA
GCATGCAACGTTTCTCAACATAATTTTCTCTATTCCTCTATTCGACATCT
GATTGGTTGCTGGGTGAATaaagcgttttgattggtcagttGTTTTTTAA
TAGCTCTCGTTCGCTCACGGTTTGTTGTATTGTTATgggtcaaaacaaaa
aacacgtcttttattttatcaaaattgaaagttcatatgtaaaaa Coding sequence (CDS) from alignment at sc0000047:670442..672786 >TCONS_00004724 ID=TCONS_00004724|Name=TCONS_00004724|organism=Clytia hemisphaerica|type=CDS|length=1047bp|location=Sequence derived from alignment at sc0000047:670442..672786 (Clytia hemisphaerica)
ttaccaaaaattcaattttcgtAATGTGTCAAGGGGCTTGACGTAATGAA
AGTCTTCAACATTACAGTGTGGACAGACCGCTGAtgatgaaaaatgtgaa
aagaaCAGAGTTGTTGCATCACCATTATTCCAGTCAATAATCGATTTATG
ACAGTTTTTACATTTCACTCGAGCCTCGCAGCAAGGAATAGCTGATAAAA
TGTTATAAGAGTATAGAGTGCCAACTTGGAAAAAAGACCCATTCCAGGGT
GAATAACAACTTGAGCATTGTAGTTTATTAGGTTTACCTTCCAAGCAGCT
GACACAGATAAAACACATGTGACGCTGAGGGGTCGGAGAGGCCGAGGGTC
CATCACTCACTTTATCATCAACAAAGCTTATACAGTTCTGTGATAATTTG
ACAGGTGATAAAAACAATGTCCCATCAACGATTGGGAAATTTTCGTAAAC
TTGAGACTCAGTATTACAGAATAGACAACACATGGAACCAGTATTTGATT
TGCGCATTGAGTTATGTACAGATTCAACAATTTCACGCCCATGTTCATCT
CCTCCACCAAACATCATTGTGACTTTCCGGAATCTCTCAGTCGACAAAAC
AGATTTCAATACTCTTAAATCTTTACGTTTTTTAAAGacaagttcaaaat
tttttggacTGCTGTTCAAAGAGTTattgttgttgaaattttgctgtTGT
TGCATTTTAAGGCCAGCTTGTTCCAAGATTTTTCTACTGTTCTCGTTATG
GTACGGTCTGTTGCCATTCAAATACAATTGATTCAAACTATCCAACATCG
AGGATGAATTAGCTCCACCAGTTTTCATTGGTAAGCCAGAGTAAGTGGTT
CTGGAGTTACCATATTTGGATGGATGATGACAGTAAGACATGTCTGTTTG
ACCGGATTCGTAGTAGTTACAATCCTGGTTAGCACTTTCTTGAGCACGGC
ACGAGTTGTATGAAAATCCGTTCAAAAGAGGTGGTGAACCAAACACAAAA
TTCTCCTCCAAAGTTGTCCTCGATTGATGTACTTGCATATTGCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004724-exon-sc0000047-1491911889:670442..672786 | TCONS_00004724-exon-sc0000047-1491911889:670442..672786 | Clytia hemisphaerica | exon |
| TCONS_00004724-exon-sc0000047-1510915933:670442..672786 | TCONS_00004724-exon-sc0000047-1510915933:670442..672786 | Clytia hemisphaerica | exon |
| TCONS_00004724-exon-sc0000047-1575043694:670442..672786 | TCONS_00004724-exon-sc0000047-1575043694:670442..672786 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000047 | supercontig | sc0000047:670442..672786 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR031947 | Headcase_mid |
Blast
BLAST of TCONS_00004724 vs. Swiss-Prot (Human)
Match: HDC (Headcase protein homolog OS=Homo sapiens GN=HECA PE=1 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.559e-31 Identity = 75/210 (35.71%), Postives = 113/210 (53.81%), Query Frame = 1
Query: 1405 FKKRKDLRVLKSVLSTERFR--KVTMMFGGGDEHGREIVESVHNSMRKSNTGSMCCLFCNTESQVYENFPIVDGTLFLSPVKLSQNCISFVDDKVSDGPSASPTPQRHMCFICVSCLEGKPNKLQCSSCYSPWNGSFFQVGTLYSYNILSAIPCCEARVKCKNCHKSIIDWNNGDATTLFFSHFSSSAVCPHCNVEDFHYVKPLDTLRKL 2028
F +R DL L + + + V M G ++ + + ++ S+ + C C+ V+E FP+VDGTLFLSP S D+ D P H+ +CV CLEG +K+ C C S W+GS+ Q+GT+Y+Y+IL+A PCC+AR+ CK+C K +ID G +FS +S+ CPHC D+H+VKP + + L
Sbjct: 343 FLRRLDLSELLTHIPRHKLNTFHVRMEDDAQVGQGEDLRKFILAALSASHRNVVNCALCHRALPVFEQFPLVDGTLFLSP--------SRHDEIEYDVPCHLQGRLMHLYAVCVDCLEGV-HKIICIKCKSRWDGSWHQLGTMYTYDILAASPCCQARLNCKHCGKPVIDVRIG---MQYFSEYSNVQQCPHCGNLDYHFVKPFSSFKVL 540
The following BLAST results are available for this feature:
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