TCONS_00004718 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004718
Unique NameTCONS_00004718
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length496

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004718 ID=TCONS_00004718|Name=TCONS_00004718|organism=Clytia hemisphaerica|type=transcript|length=496bp
AAAATCAGGCTGGTTtcatctttgaaaaatgtttcttttaacattttatt
ATATTGCCTTGATTTGTATTATGGGGCCCTCCAGCGGTTTGCGTATTAAT
GCGCTTTTTCGGCTGGACGTGATTgcgttgaaattgaaaaaaaaaacgcg
cgattgaaaaaacttgcgtgaacgcgAAAATGCACTTTATTGCGAGAATG
TGCGAATCTGCGCTTTGTATAAATTTgtgaattttctctttttccgCCGG
TTATGTGCAAATTTCCCGAAGTTTTTTGGAAACTCGTGAAAAATttacgt
gaatgcgtgaatttcggaaaaaagttGCGTGAATGGGGCACCTCTAGTAT
GCTATTTATAATATATTAATTTCTGTAATATTTTGCATATATGATATTGA
GTATTCTATTGGTAGGACATGAAATTTTAATGTATAGTAAAAAATTTTGT
ACCCTAAACCGATTTAAGAGTCTTTCATCACTCCATCAGATCATCA
Run BLAST on NCBI

transcript from alignment at sc0000047:560571..561066

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004718 ID=TCONS_00004718|Name=TCONS_00004718|organism=Clytia hemisphaerica|type=transcript|length=496bp|location=Sequence derived from alignment at sc0000047:560571..561066 (Clytia hemisphaerica)
TGATGATCTGATGGAGTGATGAAAGACTCTTAAATCGGTTTAGGGTACAA
AATTTTTTACTATACATTAAAATTTCATGTCCTACCAATAGAATACTCAA
TATCATATATGCAAAATATTACAGAAATTAATATATTATAAATAGCATAC
TAGAGGTGCCCCATTCACGCaacttttttccgaaattcacgcattcacgt
aaATTTTTCACGAGTTTCCAAAAAACTTCGGGAAATTTGCACATAACCGG
cggaaaaagagaaaattcacAAATTTATACAAAGCGCAGATTCGCACATT
CTCGCAATAAAGTGCATTTTcgcgttcacgcaagttttttcaatcgcgcg
ttttttttttcaatttcaacgcAATCACGTCCAGCCGAAAAAGCGCATTA
ATACGCAAACCGCTGGAGGGCCCCATAATACAAATCAAGGCAATATaata
aaatgttaaaagaaacatttttcaaagatgaAACCAGCCTGATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002666XLOC_002666Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004718-exon-sc0000047-1491911889:560571..561066TCONS_00004718-exon-sc0000047-1491911889:560571..561066Clytia hemisphaericaexon
TCONS_00004718-exon-sc0000047-1510915933:560571..561066TCONS_00004718-exon-sc0000047-1510915933:560571..561066Clytia hemisphaericaexon
TCONS_00004718-exon-sc0000047-1575043694:560571..561066TCONS_00004718-exon-sc0000047-1575043694:560571..561066Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000047supercontigsc0000047:560571..561066 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.279928	0.410799	0.833514	1.18558	0.476783	0.743931	0.520843	0.774178	0.876676	0.411637	0.246639	0	0.491352	0.37664	0.835181	0.760919	0.262813	0.825044	2.15134	1.9238	0.992148	1.41744	1.06177	1.06605	0.678007	0.542691	3.01849	2.5162
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004718 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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