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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004715 ID=TCONS_00004715|Name=TCONS_00004715|organism=Clytia hemisphaerica|type=transcript|length=1016bp
NNTTTCCACGAATTGCTCACGGCAATTGTTGATACGAGACGAAGGTTTTC
CTTACAGATAGTTGGGGAATCCGTACGAATTTCAGTAGTGATTTCCTCAA
AACCGCGAGCGACTAACCTTGCTTTCACGGTGTTGGTGTCCTTGTCAGAT
TTCTCGGTAATAACCCATCTGGTCGATACTGCCTCTTGACCTTCATTGTC
AATTTCCTCATAGACATTGTACTCGGTCCATTTCTCTAGTTCCTTTTGTT
TAGCTGCTAATACTTGAGGGTTGTTACTGGAACTGTAAAGGACTTCCCCT
TCAACTGGCTGccattcaatattttcaaaatcaacgcaCTTAATAACACC
CGACACTAAATTTTTAACATTAAACCAATATTTATTCTTGCCATTAGCTT
TTCCAGCACGATTAACAGCGATAAACTTTTCTTCCTTATTGGTATCTGGG
TCAATGAACAAAATCTGCTGTCCAATACGAGGAAGCCGAATTTGGTGAGA
GTTACTTTTATTTCTACGATCGGTCTTTTTCTTATCTCCCACCGGTTGTG
TTGTTTCAACTGTTTGGATCTCTGATATCTTTTTGTCAGGTTTAGGAAGC
TTAGGCTCTGCGATCAGGTTTTCAACTGGAATCATAACTGTTTCATTACT
AACAATATCGATGTCGAATAGCTCTGGAATGGGTACTTGTGGTTGTTCAT
CTTCATCTGGTACGATAAGTATTTCCTTTGGTGATGATCCCGACTTTTCC
TTATTTGCTTTGGTCAAATGGCATGGACTTACTCGTAAAACATTTCCTCC
GTGACGCACAACAACAACTTTTCCGTCAATTCCGATAATGGTACCTGGAC
CATGCCAATCCTTGTCTGAATTTCGTTTGTAATAGACTGTATCTCCATTA
TTAAACTCCTTGCTCGTTGTTGTTCGTGTTTGACGTGATAACGCTGTTTT
GATTCTTTTACTGGATTCAGCTTGGATAAATGCCCTTCTAGCAGAGTGAA
GAGCATTCAAATGTTC Run BLAST on NCBI protein sequence of TCONS_00004715-protein >TCONS_00004715-protein ID=TCONS_00004715-protein|Name=TCONS_00004715-protein|organism=Clytia hemisphaerica|type=polypeptide|length=338bp
EHLNALHSARRAFIQAESSKRIKTALSRQTRTTTSKEFNNGDTVYYKRNS
DKDWHGPGTIIGIDGKVVVVRHGGNVLRVSPCHLTKANKEKSGSSPKEIL
IVPDEDEQPQVPIPELFDIDIVSNETVMIPVENLIAEPKLPKPDKKISEI
QTVETTQPVGDKKKTDRRNKSNSHQIRLPRIGQQILFIDPDTNKEEKFIA
VNRAGKANGKNKYWFNVKNLVSGVIKCVDFENIEWQPVEGEVLYSSSNNP
QVLAAKQKELEKWTEYNVYEEIDNEGQEAVSTRWVITEKSDKDTNTVKAR
LVARGFEEITTEIRTDSPTICKENLRLVSTIAVSNSWK Run BLAST on NCBI transcript from alignment at sc0000047:455102..456117 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004715 ID=TCONS_00004715|Name=TCONS_00004715|organism=Clytia hemisphaerica|type=transcript|length=1016bp|location=Sequence derived from alignment at sc0000047:455102..456117 (Clytia hemisphaerica)
GAACATTTGAATGCTCTTCACTCTGCTAGAAGGGCATTTATCCAAGCTGA
ATCCAGTAAAAGAATCAAAACAGCGTTATCACGTCAAACACGAACAACAA
CGAGCAAGGAGTTTAATAATGGAGATACAGTCTATTACAAACGAAATTCA
GACAAGGATTGGCATGGTCCAGGTACCATTATCGGAATTGACGGAAAAGT
TGTTGTTGTGCGTCACGGAGGAAATGTTTTACGAGTAAGTCCATGCCATT
TGACCAAAGCAAATAAGGAAAAGTCGGGATCATCACCAAAGGAAATACTT
ATCGTACCAGATGAAGATGAACAACCACAAGTACCCATTCCAGAGCTATT
CGACATCGATATTGTTAGTAATGAAACAGTTATGATTCCAGTTGAAAACC
TGATCGCAGAGCCTAAGCTTCCTAAACCTGACAAAAAGATATCAGAGATC
CAAACAGTTGAAACAACACAACCGGTGGGAGATAAGAAAAAGACCGATCG
TAGAAATAAAAGTAACTCTCACCAAATTCGGCTTCCTCGTATTGGACAGC
AGATTTTGTTCATTGACCCAGATACCAATAAGGAAGAAAAGTTTATCGCT
GTTAATCGTGCTGGAAAAGCTAATGGCAAGAATAAATATTGGTTTAATGT
TAAAAATTTAGTGTCGGGTGTTATTAAGtgcgttgattttgaaaatattg
aatggCAGCCAGTTGAAGGGGAAGTCCTTTACAGTTCCAGTAACAACCCT
CAAGTATTAGCAGCTAAACAAAAGGAACTAGAGAAATGGACCGAGTACAA
TGTCTATGAGGAAATTGACAATGAAGGTCAAGAGGCAGTATCGACCAGAT
GGGTTATTACCGAGAAATCTGACAAGGACACCAACACCGTGAAAGCAAGG
TTAGTCGCTCGCGGTTTTGAGGAAATCACTACTGAAATTCGTACGGATTC
CCCAACTATCTGTAAGGAAAACCTTCGTCTCGTATCAACAATTGCCGTGA
GCAATTCGTGGAAANN Coding sequence (CDS) from alignment at sc0000047:455102..456117 >TCONS_00004715 ID=TCONS_00004715|Name=TCONS_00004715|organism=Clytia hemisphaerica|type=CDS|length=1014bp|location=Sequence derived from alignment at sc0000047:455102..456117 (Clytia hemisphaerica)
GAACATTTGAATGCTCTTCACTCTGCTAGAAGGGCATTTATCCAAGCTGA
ATCCAGTAAAAGAATCAAAACAGCGTTATCACGTCAAACACGAACAACAA
CGAGCAAGGAGTTTAATAATGGAGATACAGTCTATTACAAACGAAATTCA
GACAAGGATTGGCATGGTCCAGGTACCATTATCGGAATTGACGGAAAAGT
TGTTGTTGTGCGTCACGGAGGAAATGTTTTACGAGTAAGTCCATGCCATT
TGACCAAAGCAAATAAGGAAAAGTCGGGATCATCACCAAAGGAAATACTT
ATCGTACCAGATGAAGATGAACAACCACAAGTACCCATTCCAGAGCTATT
CGACATCGATATTGTTAGTAATGAAACAGTTATGATTCCAGTTGAAAACC
TGATCGCAGAGCCTAAGCTTCCTAAACCTGACAAAAAGATATCAGAGATC
CAAACAGTTGAAACAACACAACCGGTGGGAGATAAGAAAAAGACCGATCG
TAGAAATAAAAGTAACTCTCACCAAATTCGGCTTCCTCGTATTGGACAGC
AGATTTTGTTCATTGACCCAGATACCAATAAGGAAGAAAAGTTTATCGCT
GTTAATCGTGCTGGAAAAGCTAATGGCAAGAATAAATATTGGTTTAATGT
TAAAAATTTAGTGTCGGGTGTTATTAAGtgcgttgattttgaaaatattg
aatggCAGCCAGTTGAAGGGGAAGTCCTTTACAGTTCCAGTAACAACCCT
CAAGTATTAGCAGCTAAACAAAAGGAACTAGAGAAATGGACCGAGTACAA
TGTCTATGAGGAAATTGACAATGAAGGTCAAGAGGCAGTATCGACCAGAT
GGGTTATTACCGAGAAATCTGACAAGGACACCAACACCGTGAAAGCAAGG
TTAGTCGCTCGCGGTTTTGAGGAAATCACTACTGAAATTCGTACGGATTC
CCCAACTATCTGTAAGGAAAACCTTCGTCTCGTATCAACAATTGCCGTGA
GCAATTCGTGGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004715-exon-sc0000047-1491911889:455102..456117 | TCONS_00004715-exon-sc0000047-1491911889:455102..456117 | Clytia hemisphaerica | exon |
| TCONS_00004715-exon-sc0000047-1510915933:455102..456117 | TCONS_00004715-exon-sc0000047-1510915933:455102..456117 | Clytia hemisphaerica | exon |
| TCONS_00004715-exon-sc0000047-1575043694:455102..456117 | TCONS_00004715-exon-sc0000047-1575043694:455102..456117 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000047 | supercontig | sc0000047:455102..456117 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013103 | RVT_2 |
Blast
The following BLAST results are available for this feature:
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