TCONS_00004709 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004709
Unique NameTCONS_00004709
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length449

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004709 ID=TCONS_00004709|Name=TCONS_00004709|organism=Clytia hemisphaerica|type=transcript|length=449bp
GGCGGCTAAagtaccagattttcacaaaaaattccgaaattttcctcttt
gTCGGTAatatcgcttaaatttcctttttaaccttatcagatttaaaaag
cttccgtcgtgcctttATCTACACTTATAAAGTTTATAAACTTTAGCAGT
TGGAaggaatatttgaaaaattgaaaatttagagaTTGAAAATTTGAGGT
ATGAGGAAAACTCTATTATATAACTATAGTGGGTTACTGCACGAGGGTAC
GCATAATATTTCCAGACAAGCGAATTACATAAAATTACACACTATTCCAA
ATACACAAAAAAGTATATACCACCAGTATAGTAACAACATCTTGATCAGA
CTATTTTTCgatatttgatatatttttttgcttgattttaaTCTGTAGTA
AAGCCTCATTATCATCTGCAGATCATAATCTAtaattccaaaatatttt
Run BLAST on NCBI

transcript from alignment at sc0000047:287803..288251

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004709 ID=TCONS_00004709|Name=TCONS_00004709|organism=Clytia hemisphaerica|type=transcript|length=449bp|location=Sequence derived from alignment at sc0000047:287803..288251 (Clytia hemisphaerica)
aaaatattttggaattaTAGATTATGATCTGCAGATGATAATGAGGCTTT
ACTACAGAttaaaatcaagcaaaaaaatatatcaaatatcGAAAAATAGT
CTGATCAAGATGTTGTTACTATACTGGTGGTATATACTTTTTTGTGTATT
TGGAATAGTGTGTAATTTTATGTAATTCGCTTGTCTGGAAATATTATGCG
TACCCTCGTGCAGTAACCCACTATAGTTATATAATAGAGTTTTCCTCATA
CCTCAAATTTTCAAtctctaaattttcaatttttcaaatattcctTCCAA
CTGCTAAAGTTTATAAACTTTATAAGTGTAGATaaaggcacgacggaagc
tttttaaatctgataaggttaaaaaggaaatttaagcgatatTACCGAca
aagaggaaaatttcggaattttttgtgaaaatctggtactTTAGCCGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002657XLOC_002657Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004709-exon-sc0000047-1491911889:287803..288251TCONS_00004709-exon-sc0000047-1491911889:287803..288251Clytia hemisphaericaexon
TCONS_00004709-exon-sc0000047-1510915933:287803..288251TCONS_00004709-exon-sc0000047-1510915933:287803..288251Clytia hemisphaericaexon
TCONS_00004709-exon-sc0000047-1575043694:287803..288251TCONS_00004709-exon-sc0000047-1575043694:287803..288251Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000047supercontigsc0000047:287803..288251 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.144152	0	0	0	0	0	0	0	0.154298	0	0	0	0	0.167879	0	0	0	0.31428	0	0.857547	0.627422	0.508476	0.770464	0.476136	0.566587	0.202696	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004709 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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