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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004705 ID=TCONS_00004705|Name=TCONS_00004705|organism=Clytia hemisphaerica|type=transcript|length=1860bp
NNAAAATCAACAGCAATTTAGAAGCAAACGACATTACAAAGGCCAAAGAG
AGCACCTCAGAAGGTatgaaagaaatttataaaagaCAAAAGTTGATACA
AATAGCAGATAGGGAAGAGGATGGCTGGGAGGTTATTAAATGCTATCAGT
CAGATAATTTAGCATCTGATTCTGAGGATGAAAAGAGACTAAATAAATCG
AGAAGACAagccaaacaaaacaaaaaggaagCAAGAACTAGGAGGCTCAA
TTACAGAAAAAAGTTTGATCAAAATGGCTCAAGAGATTCCTCAAGAGATT
ACACGTCAAACTCATTTTATTCTACTAGATGCCCTAGATACCCACCCAAA
GACAGATCATGTTATTACTGTGGGAAGGAAGGACACTTACAGTACAACTG
CCCAGTCAAAAGATCAGATCTCAATAAAGGACACTAGGGATTacgatttt
aaagaaaaatgtaacGAAATTTCAGTATTTGGTCGTCTAAAGACatgttc
aaatttttggaaaaataatttacacgtttcaaatttttttcaaaagatta
ttGACGAAGGCTATTTGATTCCATTTAAGAGTGTTCCACCtgcatttttt
gccaaaaataacaAGTCCAGTCTCGATAATTCAAATTTCGTCCAAGACGC
AATCAAATCGCTATTGTTAAAAGGATGTATTTCTGAAGTTTCCGATGTCC
CCAAGTGTTGTAATCCATTAACAGTTGCAGAAAGAAATTCCAAGTTACGT
TTGGTACTTAACCAATTTGTTGATAACCAAAAATTCAAATACGAAGATCT
GAAAACTTTTGCAGAGCTTTTCGACCAAGACGATTTCTTTATCACTTTCG
ACTTAACCTCTGGATACCACCACGTTGATATTCATCCTgaacataaaaaa
aatatttaggttTTCACTGGCTTTTTCCTGACGGACAAACTAAGTATTTC
ATATTTAATGTTTTGCCATTCGGACTAAGCTCGGCATGctacatttttac
aaaaatattgagACCGTTTATTAAAAAATGGAGATCAGAAGGGAttaaaa
gtataatttttatagaCGATGGTATTTGTGGGGGAAGAGGTTTGCAGTTC
GTTGAATCCATANTGATTGGCTCAACGATAAGACATCTTAAAGTTTGTAA
TGCTTCTGGGACTCTTATCGTACCAGTTTGGCCATCAGCTTACTACTGGC
CAATCATTTTTCCACGACAAATCATCGCAAGTTTCGTaaaagacattttt
atttttgaacctTTTTATACTTCAATCTGTAAGGACTCTGTATTTAATGg
ctatgcaaaatttaagacaATGGCTTTAAAGATCAAATTTTAAGAAGGAA
AGAAcgtcaaatttaatttctattttttcttcaagtttTTCAGTATGTTT
AAACAGGTAAAAAGTAacttaaaatttcatttgagaTGCATACAGGCATT
TTATTTGTCCAATAAGTAGACACCCCTGAACGGAGGGCTTTCTTAGCCGA
CAAAGTAGACACTCCAGGACGGAGGGCATTTTAAGCCAACAAAGTAGACA
CTCCTGTACGGAGGGCTTTTTTAGCCAGTAAAGTAGATACTTCTGTGAAG
GAAGGGCTTATCTAGCCGATAAAGTGGATACTCCTAAAGGGAGGGCTTTC
AGCcagaaaatcatttttatttttcttcgattGAAATTCCTTTTCAGTAA
CTAaggaaaatcgaaatttttttagAACCAAAGTAACCAGTCTTCTGCGT
TTGGTTTTCTCCAAATTAATATTTTAGGCTCAATATGGTCAACCGTTGCA
AACGTGAAAGACGACAGTATTAGAGAGCTCGCTGTATCTCTTCCCGACGT
AGTTATTGNN Run BLAST on NCBI protein sequence of TCONS_00004705-protein >TCONS_00004705-protein ID=TCONS_00004705-protein|Name=TCONS_00004705-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
MAQEIPQEITRQTHFILLDALDTHPKTDHVITVGRKDTYSTTAQSKDQIS
IKDTRDYDFKEKCNEISVFGRLKTCSNFWKNNLHVSNFFQKIIDEGYLIP
FKSVPPAFFAKNNKSSLDNSNFVQDAIKSLLLKGCISEVSDVPKCCNPLT
VAERNSKLRLVLNQFVDNQKFKYEDLKTFAELFDQDDFFITFDLTSGYHH
VDIHPEHKKNI Run BLAST on NCBI transcript from alignment at sc0000047:55827..57686 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004705 ID=TCONS_00004705|Name=TCONS_00004705|organism=Clytia hemisphaerica|type=transcript|length=1860bp|location=Sequence derived from alignment at sc0000047:55827..57686 (Clytia hemisphaerica)
NNCAATAACTACGTCGGGAAGAGATACAGCGAGCTCTCTAATACTGTCGT
CTTTCACGTTTGCAACGGTTGACCATATTGAGCCTAAAATATTAATTTGG
AGAAAACCAAACGCAGAAGACTGGTTACTTTGGTTctaaaaaaatttcga
ttttcctTAGTTACTGAAAAGGAATTTCaatcgaagaaaaataaaaatga
ttttctgGCTGAAAGCCCTCCCTTTAGGAGTATCCACTTTATCGGCTAGA
TAAGCCCTTCCTTCACAGAAGTATCTACTTTACTGGCTAAAAAAGCCCTC
CGTACAGGAGTGTCTACTTTGTTGGCTTAAAATGCCCTCCGTCCTGGAGT
GTCTACTTTGTCGGCTAAGAAAGCCCTCCGTTCAGGGGTGTCTACTTATT
GGACAAATAAAATGCCTGTATGCAtctcaaatgaaattttaagtTACTTT
TTACCTGTTTAAACATACTGAAaaacttgaagaaaaaatagaaattaaat
ttgacgTTCTTTCCTTCTTAAAATTTGATCTTTAAAGCCATtgtcttaaa
ttttgcatagcCATTAAATACAGAGTCCTTACAGATTGAAGTATAAAAag
gttcaaaaataaaaatgtcttttACGAAACTTGCGATGATTTGTCGTGGA
AAAATGATTGGCCAGTAGTAAGCTGATGGCCAAACTGGTACGATAAGAGT
CCCAGAAGCATTACAAACTTTAAGATGTCTTATCGTTGAGCCAATCANTA
TGGATTCAACGAACTGCAAACCTCTTCCCCCACAAATACCATCGtctata
aaaattatacttttaaTCCCTTCTGATCTCCATTTTTTAATAAACGGTct
caatatttttgtaaaaatgtagCATGCCGAGCTTAGTCCGAATGGCAAAA
CATTAAATATGAAATACTTAGTTTGTCCGTCAGGAAAAAGCCAGTGAAaa
cctaaatattttttttatgttcAGGATGAATATCAACGTGGTGGTATCCA
GAGGTTAAGTCGAAAGTGATAAAGAAATCGTCTTGGTCGAAAAGCTCTGC
AAAAGTTTTCAGATCTTCGTATTTGAATTTTTGGTTATCAACAAATTGGT
TAAGTACCAAACGTAACTTGGAATTTCTTTCTGCAACTGTTAATGGATTA
CAACACTTGGGGACATCGGAAACTTCAGAAATACATCCTTTTAACAATAG
CGATTTGATTGCGTCTTGGACGAAATTTGAATTATCGAGACTGGACTtgt
tatttttggcaaaaaatgcaGGTGGAACACTCTTAAATGGAATCAAATAG
CCTTCGTCaataatcttttgaaaaaaatttgaaacgtgtaaattattttt
ccaaaaatttgaacatGTCTTTAGACGACCAAATACTGAAATTTCgttac
atttttctttaaaatcgtAATCCCTAGTGTCCTTTATTGAGATCTGATCT
TTTGACTGGGCAGTTGTACTGTAAGTGTCCTTCCTTCCCACAGTAATAAC
ATGATCTGTCTTTGGGTGGGTATCTAGGGCATCTAGTAGAATAAAATGAG
TTTGACGTGTAATCTCTTGAGGAATCTCTTGAGCCATTTTGATCAAACTT
TTTTCTGTAATTGAGCCTCCTAGTTCTTGcttcctttttgttttgtttgg
ctTGTCTTCTCGATTTATTTAGTCTCTTTTCATCCTCAGAATCAGATGCT
AAATTATCTGACTGATAGCATTTAATAACCTCCCAGCCATCCTCTTCCCT
ATCTGCTATTTGTATCAACTTTTGtcttttataaatttctttcatACCTT
CTGAGGTGCTCTCTTTGGCCTTTGTAATGTCGTTTGCTTCTAAATTGCTG
TTGATTTTNN Coding sequence (CDS) from alignment at sc0000047:55827..57686 >TCONS_00004705 ID=TCONS_00004705|Name=TCONS_00004705|organism=Clytia hemisphaerica|type=CDS|length=636bp|location=Sequence derived from alignment at sc0000047:55827..57686 (Clytia hemisphaerica)
ctaaatattttttttatgttcAGGATGAATATCAACGTGGTGGTATCCAG
AGGTTAAGTCGAAAGTGATAAAGAAATCGTCTTGGTCGAAAAGCTCTGCA
AAAGTTTTCAGATCTTCGTATTTGAATTTTTGGTTATCAACAAATTGGTT
AAGTACCAAACGTAACTTGGAATTTCTTTCTGCAACTGTTAATGGATTAC
AACACTTGGGGACATCGGAAACTTCAGAAATACATCCTTTTAACAATAGC
GATTTGATTGCGTCTTGGACGAAATTTGAATTATCGAGACTGGACTtgtt
atttttggcaaaaaatgcaGGTGGAACACTCTTAAATGGAATCAAATAGC
CTTCGTCaataatcttttgaaaaaaatttgaaacgtgtaaattatttttc
caaaaatttgaacatGTCTTTAGACGACCAAATACTGAAATTTCgttaca
tttttctttaaaatcgtAATCCCTAGTGTCCTTTATTGAGATCTGATCTT
TTGACTGGGCAGTTGTACTGTAAGTGTCCTTCCTTCCCACAGTAATAACA
TGATCTGTCTTTGGGTGGGTATCTAGGGCATCTAGTAGAATAAAATGAGT
TTGACGTGTAATCTCTTGAGGAATCTCTTGAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004705-exon-sc0000047-1491911889:55827..57686 | TCONS_00004705-exon-sc0000047-1491911889:55827..57686 | Clytia hemisphaerica | exon |
| TCONS_00004705-exon-sc0000047-1510915933:55827..57686 | TCONS_00004705-exon-sc0000047-1510915933:55827..57686 | Clytia hemisphaerica | exon |
| TCONS_00004705-exon-sc0000047-1575043694:55827..57686 | TCONS_00004705-exon-sc0000047-1575043694:55827..57686 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000047 | supercontig | sc0000047:55827..57686 . |
Blast
The following BLAST results are available for this feature:
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