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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004702 ID=TCONS_00004702|Name=TCONS_00004702|organism=Clytia hemisphaerica|type=transcript|length=1966bpRun BLAST on NCBI protein sequence of TCONS_00004702-protein >TCONS_00004702-protein ID=TCONS_00004702-protein|Name=TCONS_00004702-protein|organism=Clytia hemisphaerica|type=polypeptide|length=604bp DTILEFTKMKSKSKFKSKQSSKSSTNNANENNDSNFDRIGEILVIIVGLGRun BLAST on NCBI transcript from alignment at sc0000047:625003..655970- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004702 ID=TCONS_00004702|Name=TCONS_00004702|organism=Clytia hemisphaerica|type=transcript|length=30968bp|location=Sequence derived from alignment at sc0000047:625003..655970- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000047:625003..655970- >TCONS_00004702 ID=TCONS_00004702|Name=TCONS_00004702|organism=Clytia hemisphaerica|type=CDS|length=25410bp|location=Sequence derived from alignment at sc0000047:625003..655970- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004702 vs. Swiss-Prot (Human)
Match: D19L3 (Probable C-mannosyltransferase DPY19L3 OS=Homo sapiens GN=DPY19L3 PE=2 SV=1) HSP 1 Score: 474.937 bits (1221), Expect = 1.746e-157 Identity = 249/555 (44.86%), Postives = 357/555 (64.32%), Query Frame = 1
Query: 178 AIYSKEIHENEMWFSNIKQVEREISFRTESGLYFSYYKQLVLAPSLSQGLYELTHDNRTEHLRTINILERFNIYQEVILGIIYRSFSQAMKDSWQYVYFYIDSVFALHGLYMVAIFITTWQMSGTFLAGVLSVGFFVFNRFNMTRLAFTVPLRESFSLPFIYIQIAAITFFLRKKCSAREEKVHLVIVSLSTFLLTLFWQFAQFVLLLEAFALFGLYAMEFTESRKVKPLYCIMLGSLASVCFVQFGNDMLYTALVGSFCIASLLLMSVWKP-GTG-FFWKLFLLTAQIITVFVITFGLNFAIKKITKVDSDEHVFKFVSSKLGLGDAALKKDFDALMYLCEGGFQFMPMSTFQVLTDGVVFPVYAMSGIVIILVLVFSYFQKLRGT----------ETLLDDYPEIIFNVILNVFFGGMALTTIRMKFLWMPHMCILAAGIICHQKTWKTCLESIHFKGFLNFAV-RQSIPVLILSVLLYKKLDVTREELKRLSEFHDPDTVQLMEWIKKETPTDAAFTGSMQLMAGVKLCTDRPITNHPHYENKFLRERTREV 1803
++Y +HEN++WFSNIK+VEREISFRTE GLY+SYYKQ++ AP+L QG + L +DN+TE ++TIN+L+R NIYQEV L I+YR ++ + VYFYI ++F L +Y+ A++IT+W +SGT+L+G+L+ ++V NR + TR+ FT+PLRE+++LPF IQIAAIT+FLR E++ L+ + +STFL +L WQF QF++L++A LF L +++ + K LY I + SL VC +QF N M+ +L+ SF ++ + + K TG F +L L + V +T LN IKKI + SDEH+FKF+ +K GLG +DFDA +YLCE F +P +TF L+D ++F Y + ++V F L + + +D PE +N+I + FG +AL+T+RMK+LW HMC+ A+ +C + W+ L+S+H + R S+P+LIL L YK +EL L EF+DPDTV+LM WI TP A F GSMQL+AGVKLCT R +TNHPHYE+ LRERTR V
Sbjct: 62 SVYLATLHENDLWFSNIKEVEREISFRTECGLYYSYYKQMLQAPTLVQGFHGLIYDNKTESMKTINLLQRMNIYQEVFLSILYRVL--PIQKYLEPVYFYIYTLFGLQAIYVTALYITSWLLSGTWLSGLLAAFWYVTNRIDTTRVEFTIPLRENWALPFFAIQIAAITYFLRPNLQPLSERLTLLAIFISTFLFSLTWQFNQFMMLMQALVLFTLDSLDMLPAVKATWLYGIQITSLLLVCILQFFNSMILGSLLISFNLSVFIARKLQKNLKTGSFLNRLGKLLLHLFMVLCLTLFLNNIIKKILNLKSDEHIFKFLKAKFGLGAT---RDFDANLYLCEEAFGLLPFNTFGRLSDTLLFYAYIFVLSITVIVAFVVAFHNLSDSTNQQSVGKMEKGTVDLKPETAYNLIHTILFGFLALSTMRMKYLWTSHMCVFASFGLCSPEIWELLLKSVHLYNPKRICIMRYSVPILILLYLCYKFWPGMMDELSELREFYDPDTVELMNWINSNTPRKAVFAGSMQLLAGVKLCTGRTLTNHPHYEDSSLRERTRAV 611 The following BLAST results are available for this feature:
BLAST of TCONS_00004702 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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