TCONS_00004675 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004675
Unique NameTCONS_00004675
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length227

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004675 ID=TCONS_00004675|Name=TCONS_00004675|organism=Clytia hemisphaerica|type=transcript|length=227bp
ttgatattatcaTGCATATGCATTTCcaatagaaaataaataaaaatggc
aACTCTATCCGTCCTCAATAAATTTCGTCATTTATCATGTTTGAAGCAAG
CCACTGAAAAGATCCTGCCAACATTTTCAAGCATTAGCTCCCGACAAATG
AGCACTGCTGAGTCTGCTGAATACCATCTCTTAGTAAGTCTATATTATTA
TCAGCCTGAATTTGTATTGTATATACA
Run BLAST on NCBI

transcript from alignment at sc0000047:278717..279373-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004675 ID=TCONS_00004675|Name=TCONS_00004675|organism=Clytia hemisphaerica|type=transcript|length=657bp|location=Sequence derived from alignment at sc0000047:278717..279373- (Clytia hemisphaerica)
TTGATATTATCATGCATATGCATTTCCAATAGAAAATAAATAAAAATGGC
AACTCTATCCGTCCTCAATAAATTTCGTCATTTATCATGTTTGAAGCAAG
CCACTGAAAAGGTATTTATTATTGTTATTCATTCAAATAATTTTGAGAAA
GTAATATTGTGAAGTTAATATCCAGACCGCTTCCCTATTCAGAACTAAGA
TTCAGATTTTTCTATCGAAATGTCAGATGGATTATCTAAAACCTAGGAAA
CGTCCCCTTTGGCAGTATTATGGTCTACTAACTTACATACTTACAACACT
CATTGAATAAGGATTGAGAAATTACATTTCAACAGTATTTTAACTCTGTT
AGAATTTCTGTCAAATTCTAACAAATTTCAATGAGAAGATTTACGCTTAG
CACTATCTGGCAGTATCTGATTTTTCAAAACTTTCTTAGTACCCTTTATT
CAGACACCCCTTATCTGTGACTTTTTTTTTGCAAGCAAGAAACTTCACAT
TGTAACTGGCAATTTTAAAGCGCATTGTTTTCATTCTTTAGATCCTGCCA
ACATTTTCAAGCATTAGCTCCCGACAAATGAGCACTGCTGAGTCTGCTGA
ATACCATCTCTTAGTAAGTCTATATTATTATCAGCCTGAATTTGTATTGT
ATATACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002635XLOC_002635Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004675-exon-sc0000047-1575043694:279263..279373TCONS_00004675-exon-sc0000047-1575043694:279263..279373Clytia hemisphaericaexon
TCONS_00004675-exon-sc0000047-1575043694:278717..278832TCONS_00004675-exon-sc0000047-1575043694:278717..278832Clytia hemisphaericaexon
TCONS_00004675-exon-sc0000047-1510915933:279263..279373TCONS_00004675-exon-sc0000047-1510915933:279263..279373Clytia hemisphaericaexon
TCONS_00004675-exon-sc0000047-1510915933:278717..278832TCONS_00004675-exon-sc0000047-1510915933:278717..278832Clytia hemisphaericaexon
TCONS_00004675-exon-sc0000047-1491911889:279263..279373TCONS_00004675-exon-sc0000047-1491911889:279263..279373Clytia hemisphaericaexon
TCONS_00004675-exon-sc0000047-1491911889:278717..278832TCONS_00004675-exon-sc0000047-1491911889:278717..278832Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000047supercontigsc0000047:278717..279373 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.54011	7.56347	2.50912	1.22739	14.9423	24.796	18.519	24.0054	52.2877	53.2013	67.3545	66.4143	68.5327	55.1008	34.6044	50.6398	153.049	163.691	65.9597	45.6039	68.5631	48.5964	27.9496	41.5804	44.0165	29.7282	19.7511	8.10729	20.9069	21.3008
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004675 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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