|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004671 ID=TCONS_00004671|Name=TCONS_00004671|organism=Clytia hemisphaerica|type=transcript|length=4703bpRun BLAST on NCBI transcript from alignment at sc0000047:203621..247542- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004671 ID=TCONS_00004671|Name=TCONS_00004671|organism=Clytia hemisphaerica|type=transcript|length=43922bp|location=Sequence derived from alignment at sc0000047:203621..247542- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00004671 vs. Swiss-Prot (Human)
Match: TNKS1 (Tankyrase-1 OS=Homo sapiens GN=TNKS PE=1 SV=2) HSP 1 Score: 1138.64 bits (2944), Expect = 0.000e+0 Identity = 552/810 (68.15%), Postives = 656/810 (80.99%), Query Frame = 1
Query: 151 RELFEACRTGDVTRVRGLIQGGWPVNMRDTAGRKSTPLHFAAGFGRKDIVEFLLEVGANVHARDDGGLIPLHNACSFGHVEVTLSLLRHDADVNARDNWNFTPLHEAAIKGKVEVCIALLQHGADSKICNTDGKTAYDLAEPIAKSVLSGDYRKEELLESARSGVEEKMKSLITPLNVNCHAGDGRKSTPLHLAAGYNRTRIVEILLKHGADVLAKDKGGLVPLHNACSYGHYEVTELLIKSGASVNAMDLWQFTPLHEAASKMRIEVCSLLLSYGADPSIVNCHSKTAFDVAATKELRDKLHYEYRGHSFLEVVKLGDLGKVKRSA--EIVNFVHPLTLDTALHVCARSTSAKRERIAEFLIKKGCNVNQANKDKMTALHVAADHGNTEIMEVLVKANAELNVLDEMLQTPLHRAAQSDHTQACRVLLMNGADQTVRSACGVTPSQIAAENAQKVFQATQESATKDIDLKLLEASKTGDFTTIKALCTPQTVNCRDLAGRLSTPLHFASGYNRIDIVEHILKNGANVHAKDKGGLVPLHNACSYGHYEVAESLVRHGASVNAADHWKFTPLHEAAGKGKFDICKLLLKHGADANKKNHEGKTPLDLVKEGFPDVADLLRGDVALLEAAKKGTLAKVMKLATPQNINCRDTQGRNSTPLHLAAGYNHVEVAEFLLESGADVNAQDKGGLIPLHNASSYGHVDIAALLIKYKADVNATDRWMFTPLHEASQKGRTQLCALLLTHGADPNLKNQENQTPLNLASAEDVKVLLMDSMASKSQVIQIPANNPLPTSTSPR-MYASSNLLSTASV 2571
REL EACR GDV+RV+ L+ VN +D AGRKS+PLHFAAGFGRKD+VE LL++GANVHARDDGGLIPLHNACSFGH EV LL AD NARDNWN+TPLHEAAIKGK++VCI LLQHGAD I NTDGK+A DLA+P AK+VL+G+Y+K+ELLE+ARSG EEK+ +L+TPLNVNCHA DGRKSTPLHLAAGYNR RIV++LL+HGADV AKDKGGLVPLHNACSYGHYEVTELL+K GA VNAMDLWQFTPLHEAASK R+EVCSLLLS+GADP++VNCH K+A D+A T ELR++L YE++GHS L+ + DL KVK++ EI+NF P + +TALH S KR+++ E L++KG NVN+ NKD MT LHVAA+ + ++MEVL K A++N LD + QT LHRAA + H Q CR+LL G+D ++ S G T +Q+ E Q++ + T D+D +LLEASK GD T+K LC+ Q VNCRDL GR STPLHFA+GYNR+ +VE++L +GA+VHAKDKGGLVPLHNACSYGHYEVAE LVRHGASVN AD WKFTPLHEAA KGK++ICKLLLKHGAD KKN +G TPLDLVKEG D+ DLLRGD ALL+AAKKG LA+V KL TP+NINCRDTQGRNSTPLHLAAGYN++EVAE+LLE GADVNAQDKGGLIPLHNA+SYGHVDIAALLIKY VNATD+W FTPLHEA+QKGRTQLCALLL HGADP +KNQE QTPL+LA+A+D++ LL+D+M ++ LPT P+ S++L+S AS
Sbjct: 184 RELLEACRNGDVSRVKRLVDAA-NVNAKDMAGRKSSPLHFAAGFGRKDVVEHLLQMGANVHARDDGGLIPLHNACSFGHAEVVSLLLCQGADPNARDNWNYTPLHEAAIKGKIDVCIVLLQHGADPNIRNTDGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVTELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDTLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQQILSESTPIRTSDVDYRLLEASKAGDLETVKQLCSSQNVNCRDLEGRHSTPLHFAAGYNRVSVVEYLLHHGADVHAKDKGGLVPLHNACSYGHYEVAELLVRHGASVNVADLWKFTPLHEAAAKGKYEICKLLLKHGADPTKKNRDGNTPLDLVKEGDTDIQDLLRGDAALLDAAKKGCLARVQKLCTPENINCRDTQGRNSTPLHLAAGYNNLEVAEYLLEHGADVNAQDKGGLIPLHNAASYGHVDIAALLIKYNTCVNATDKWAFTPLHEAAQKGRTQLCALLLAHGADPTMKNQEGQTPLDLATADDIRALLIDAMPPEA----------LPTCFKPQATVVSASLISPAST 982 HSP 2 Score: 714.531 bits (1843), Expect = 0.000e+0 Identity = 462/1184 (39.02%), Postives = 625/1184 (52.79%), Query Frame = 1
Query: 592 LSGDYRKEELLESARSGVEEKMKSLITPLNVNCHAGDGRKSTPLHLAAGYNRTRIVEILLKHGADVLAKDKGGLVPLHNACSYGHYEVTELLIKSGASVNAMDLWQFTPLHEAASKMRIEVCSLLLSYGADPSIVNCHSKTAFDVAATKELRDKLHYEYRGHSFLEVVKLGDLGKVKRSAEIVNFVHPLTLD---------TALHVCARSTSAKRERIAEFLIKKGCNVNQANKDKMTALHVAADHGNTEIMEVLVKANAELNVLDEMLQTPLHRAAQSDHTQACRVLLMNGADQTV-----RSACGVTPSQIAAENAQKVFQATQESATKDIDLKLLEASKTGDFTTIKALCTPQTVNCRDLAGRLSTPLHFASGY---NRIDIVEHILKNGANVHAKDKGGLVPLHNACSYGHYEVAESLVRHGASVNAADHWKFTPLHEAAGKGKFDICKLLLKHGADANKKNHEGKTPLDLVKEGFPDV---ADLLRG---DVALLEAAKKGTLAKVMKLATPQNINCRDTQGRNSTPLHLAAGYN---------------------------------HVEVAEFLLESGADVNAQDKGGLIPLHNASSY--------------------------------GHVDIAALLIKYKADVNATDRWMF----------------------TPLHEASQKGRTQLCALLLTHGADPNLKNQENQTPL-NLASAEDVKVLLMDSMASKSQVIQIPANNPLPTSTSPRMYASSNLLSTASVARTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLPKQPARSNLPPEVKKQQEGMTAC--SHANKSLLMSEPCNVDGL--PTKRLV--------DQAEGTNP-------LDIDIATFLEALSLQTLNETFTREQITMDVLVEMGHEQLKEIGITAYGHRHKVLKGVKERLAGVGCTIVSDPYESVSAPGSSTILQELSPNDIDYQSVVEELQSTIVEHKDGGVAGGIFKKYTHIKIERVINKRLWDRYAYQRKQVSESNHCCSNERMLFHGSPFVNAIVQKGFDERHAYIGGMFGAGIYFAEHSSKSNQYVYGIGGGSGCLKHKDRSCYECKRQIILCRVTLGKPYFQLAAMKMAHSPPGHHSVIGRPNSGGLCYPEYVVYRGEQAYPEYLISYKISSSEI-QQGATA 3750
+SG R ELLE+ R+G ++K L+ NVN GRKS+PLH AAG+ R +VE LL+ GA+V A+D GGL+PLHNACS+GH EV LL+ GA NA D W +TPLHEAA K +I+VC +LL +GADP+I N K+A D+A + L EY+ LE + G+ K ++ + PL ++ T LH+ A R RI + L++ G +V+ +K + LH A +G+ E+ E+L+K A +N +D TPLH AA + + C +LL +GAD T+ +SA + P+ E F+ LL+A++ D +K + +N + T LH A R + E +L+ GANV+ K+K + PLH A H +V E L +HGA +NA D T LH AA G C+LLL +G+D + + +G T + E + + +R D LLEA+K G L V +L + QN+NCRD +GR+STPLH AAGYN H EVAE L+ GA VN D PLH A++ G DI LL A ++A + TPLH A+ ++ LL HGAD N +++ PL N AS V + + I N + + +A + L A RT + + A + ++ P + LP K Q ++A S A+ +S ++D L P L D A GT LD++I+ FL++L L+ L + F EQIT+DVL +MGHE+LKEIGI AYGHRHK++KGV+ L G T +PY + TIL +L+P D +YQSV EE+QSTI EH+DGG AGGIF +Y I+I++V+NK+L +R+ +++K+VSE NH NERMLFHGSPF+NAI+ KGFDERHAYIGGMFGAGIYFAE+SSKSNQYVYGIGGG+GC HKDRSCY C RQ++ CRVTLGK + Q + MKMAH+PPGHHSVIGRP+ GL Y EYV+YRGEQAYPEYLI+Y+I E Q ATA
Sbjct: 179 VSGALR--ELLEACRNGDVSRVKRLVDAANVNAKDMAGRKSSPLHFAAGFGRKDVVEHLLQMGANVHARDDGGLIPLHNACSFGHAEVVSLLLCQGADPNARDNWNYTPLHEAAIKGKIDVCIVLLQHGADPNIRNTDGKSALDLA-DPSAKAVLTGEYKKDELLEAARSGNEEK------LMALLTPLNVNCHASDGRKSTPLHLAA---GYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHS----------LLQAAREADLAKVKKTLALEIINFKQPQSH-ETALHCAVASLHPKRKQVTELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDTLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQQILSESTPIRTSDVDYRLLEASKAGDLETVKQLCSSQNVNCRDLEGRHSTPLHFAAGYNRVSVVEYLLHHGADVHAKDKGGLVPLHNACSYGHYEVAELLVRHGASVNVADLWKFTPLHEAAAKGKYEICKLLLKHGADPTKKNRDGNTPLDLVKEGDTDIQDLLRGDAALLDAAKKGCLARVQKLCTPENINCRDTQGRNSTPLHLAAGYNNLEVAEYLLEHGADVNAQDKGGLIPLHNAASYGHVDI----------AALLIKYNTCVNATDK---WAFTPLHEAAQKGRTQLCALLLAHGADPTMKNQEGQTPLDLATADDIRALLIDAMPPEA-LPTCFKPQATVVSASLISPASTPSCLSAASSIDNLTGPLAELAVGGASNAGDGAAGTERKEGEVAGLDMNISQFLKSLGLEHLRDIFETEQITLDVLADMGHEELKEIGINAYGHRHKLIKGVERLLGGQQGT---NPYLTFHCVNQGTILLDLAPEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKLRERFCHRQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTMKMAHAPPGHHSVIGRPSVNGLAYAEYVIYRGEQAYPEYLITYQIMKPEAPSQTATA 1322 The following BLAST results are available for this feature:
BLAST of TCONS_00004671 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.