TCONS_00004668 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004668
Unique NameTCONS_00004668
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1105

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004668 ID=TCONS_00004668|Name=TCONS_00004668|organism=Clytia hemisphaerica|type=transcript|length=1105bp
atttaggcAAAGCTTCAGTCCAAGAAACAACCATTCAAATTCTCCACAAA
GATATCGTTTCAACAATACACCATCCAAAACTAATGCTGAAAAAACAACT
ACGCCAACTGCTATTAAACCAGAAGAAACCAAGGCACCTACCCCAAACAA
TCAACAAAATCGTCAAAGATCCAGATCACCCGTTGACAGAAATACAACTT
CTAATACTAAACAAGAAGTTAAGACTGAACAGGCCTCACCAGTTGTTCCT
GAAAGTAAACCTGCTGCTACCACGCCAAAACCAGCTGCAAATTCGAAACC
AGCAAACAGTCCAAAACCTGGAAACAAAAATAACACTCCAAACAAACCCA
ATAACACTCCAAACAAACCCAATAACACTCCAAACAAACCTAATAACACT
GCAAACACCAATAATGACAACAATGAAAGAGTTAGATATACTGGTAGACC
TGGAGAGAAAAAGTTCAGTAACAAATGTCGTCTTTTTGTTGCTAATCTCA
ATACAAACATGACTGAAGATGAGGTCAAAGGTCTGTTCACGCCATTTGGA
GAGTTGAGTGAAATCTTCTTCAACAAAGAAAAAGGATTTGGATTTGTGAG
ATTGGATTACAGAATAAATGCTGAAGACGCTAAAAGAGCTTTGGATAAAA
AACTAGTCAAAGGAAGAAATATTCAAGTCCGATATGCAACACATGCTTCC
TCAATAGAATTACATGGATTGGATGAATATGCCTCAAATGAACTTATTAA
TGATGCTATGAGCCAATTTGGAAAAGTTGAAAAGGCAAACATTATCTGTG
ATGAAAGAGGGAAATCTAGGGGATATGCTATTGTTGaatttgaatggaaa
aaaagtGCACAAAAAGTTTTGGATCGGTTCAAGAATGAATTGTTTGTTCT
AGGAAGGGAGAGAGAGTTTCAACCAAGATTTGTCTCTGCAGATTCATTTG
AATATCAAATGGCCTGCAAGTGGAGGGATCTCAACCTTGAAGAACAAGAA
AAGAAAGCACAACTTGATCAGGAATTACAGAATGCAAGATACAATGTTCA
AATGGAAATGGAATCACTCAAAGAAGAACGAGATGCAATGAAGATGAGAG
AAGGT
Run BLAST on NCBI

protein sequence of TCONS_00004668-protein

>TCONS_00004668-protein ID=TCONS_00004668-protein|Name=TCONS_00004668-protein|organism=Clytia hemisphaerica|type=polypeptide|length=368bp
FRQSFSPRNNHSNSPQRYRFNNTPSKTNAEKTTTPTAIKPEETKAPTPNN
QQNRQRSRSPVDRNTTSNTKQEVKTEQASPVVPESKPAATTPKPAANSKP
ANSPKPGNKNNTPNKPNNTPNKPNNTPNKPNNTANTNNDNNERVRYTGRP
GEKKFSNKCRLFVANLNTNMTEDEVKGLFTPFGELSEIFFNKEKGFGFVR
LDYRINAEDAKRALDKKLVKGRNIQVRYATHASSIELHGLDEYASNELIN
DAMSQFGKVEKANIICDERGKSRGYAIVEFEWKKSAQKVLDRFKNELFVL
GREREFQPRFVSADSFEYQMACKWRDLNLEEQEKKAQLDQELQNARYNVQ
MEMESLKEERDAMKMREG
Run BLAST on NCBI

transcript from alignment at sc0000047:125985..127696-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004668 ID=TCONS_00004668|Name=TCONS_00004668|organism=Clytia hemisphaerica|type=transcript|length=1712bp|location=Sequence derived from alignment at sc0000047:125985..127696- (Clytia hemisphaerica)
ATTTAGGCAAAGCTTCAGTCCAAGAAACAACCATTCAAATTCTCCACAAA
GATATCGTTTCAACAATACACCATCCAAAACTAATGCTGAAAAAACAACT
ACGCCAACTGCTATTAAACCAGAAGAAACCAAGGCACCTACCCCAAACAA
TCAACAAAATCGTCAAAGATCCAGATCACCCGTTGACAGAAATACAACTT
CTAATACTAAACAAGAAGTTAAGACTGAACAGGCCTCACCAGTTGTTCCT
GAAAGTAAACCTGCTGCTACCACGCCAAAACCAGCTGCAAATTCGAAACC
AGCAAACAGTCCAAAACCTGGAAACAAAAATAACACTCCAAACAAACCCA
ATAACACTCCAAACAAACCCAATAACACTCCAAACAAACCTAATAACACT
GCAAACACCAATAATGACAACAATGAAAGAGTTAGATATACTGGTAGACC
TGGAGAGAAAAAGTTCAGTAACAAATGTCGTCTTTTTGTTGCTAATCTCA
ATACAAACATGACTGAAGATGAGGTCAAAGGTCTGTTCACGCCATTTGGA
GAGTTGAGTGAAATCTTCTTCAACAAAGAAAAAGGATTTGGATTTGTGAG
ATTGGTAGGTAGTTGGCCTAGATGTTAATTTCCTAACTAACTATAAAGCT
TATACGAAATTGAGTTATATTAACCATTGCCATCCACAAATTATTGCTAT
GATAAATGCATTGTTTCTAGGGAAAGGGGGCATTATTTGATACACAATTT
ATTGCTGTACAAATTAAGCAGTGTTGGTTGATGATTGGTGAGATAGGAAG
TCTTTTTTGGCAATATTGAGTCAAATTTTGAATTTTACTTTACAGGATTA
CAGAATAAATGCTGAAGACGCTAAAAGAGCTTTGGATAAAAAACTAGTCA
AAGGAAGAAATATTCAAGTCCGATATGCAACACATGCTTCCTCAATAGAA
TTACATGGATTGGATGAATATGCCTCAAATGAACTTATTAATGATGCTAT
GAGCCAATTTGGAAAAGTTGAAAAGGCAAACATTATCTGTGATGAAAGAG
GGAAATCTAGGGGATATGCTATTGTTGAATTTGAATGGAAAAAAAGTGCA
CAAAAAGTTTTGGATCGGTTCAAGAATGAATTGTTTGTTCTAGGAAGGTA
ATAAGCTGCACAATGTTGTTTTTTAGAATTTGATTTTTCTCATCCACCTA
GAGGAGGTAAATCCTCTGGTAAATTTGGACTCTCATTCAGAGTAGACAGG
CAGCTGAGGTCACAAAAAAATTGGACGGGGTGCGGACAATCCCAAACCAC
TTTTAATTGAAAATATACAACCTAAATATCTAGAAACCATCAACTGGAGT
TGTTAAATTAATTACCGGACACGTCCGGTAATATTTTAGAACCTGATGAC
GTCATGCGTGCCCATAGGCAAACTGAAAAAAANCATAGCGACAGCTACTT
GCTAGTATAAACTTTACGGGTGTGTATTGCAGAGTAAATGATTGATCTTT
TTGTTGTCTACAGGGAGAGAGAGTTTCAACCAAGATTTGTCTCTGCAGAT
TCATTTGAATATCAAATGGCCTGCAAGTGGAGGGATCTCAACCTTGAAGA
ACAAGAAAAGAAAGCACAACTTGATCAGGAATTACAGAATGCAAGATACA
ATGTTCAAATGGAAATGGAATCACTCAAAGAAGAACGAGATGCAATGAAG
ATGAGAGAAGGT

Coding sequence (CDS) from alignment at sc0000047:125985..127696-

>TCONS_00004668 ID=TCONS_00004668|Name=TCONS_00004668|organism=Clytia hemisphaerica|type=CDS|length=3312bp|location=Sequence derived from alignment at sc0000047:125985..127696- (Clytia hemisphaerica)
GGAGAGAGAGTTTCAACCAAGATTTGTCTCTGCAGATTCATTTGAATATC
AAATGGCCTGCAAGTGGAGGGATCTCAACCTTGAAGAACAAGAAAAGAAA
GCACAACTTGATCAGGAATTACAGAATGCAAGATACAATGTTCAAATGGA
AATGGAATCACTCAAAGAAGAACGAGATGCAATGAAGATGAGAGAAGGTG
ATTACAGAATAAATGCTGAAGACGCTAAAAGAGCTTTGGATAAAAAACTA
GTCAAAGGAAGAAATATTCAAGTCCGATATGCAACACATGCTTCCTCAAT
AGAATTACATGGATTGGATGAATATGCCTCAAATGAACTTATTAATGATG
CTATGAGCCAATTTGGAAAAGTTGAAAAGGCAAACATTATCTGTGATGAA
AGAGGGAAATCTAGGGGATATGCTATTGTTGAATTTGAATGGAAAAAAAG
TGCACAAAAAGTTTTGGATCGGTTCAAGAATGAATTGTTTGTTCTAGGAA
GTTTAGGCAAAGCTTCAGTCCAAGAAACAACCATTCAAATTCTCCACAAA
GATATCGTTTCAACAATACACCATCCAAAACTAATGCTGAAAAAACAACT
ACGCCAACTGCTATTAAACCAGAAGAAACCAAGGCACCTACCCCAAACAA
TCAACAAAATCGTCAAAGATCCAGATCACCCGTTGACAGAAATACAACTT
CTAATACTAAACAAGAAGTTAAGACTGAACAGGCCTCACCAGTTGTTCCT
GAAAGTAAACCTGCTGCTACCACGCCAAAACCAGCTGCAAATTCGAAACC
AGCAAACAGTCCAAAACCTGGAAACAAAAATAACACTCCAAACAAACCCA
ATAACACTCCAAACAAACCCAATAACACTCCAAACAAACCTAATAACACT
GCAAACACCAATAATGACAACAATGAAAGAGTTAGATATACTGGTAGACC
TGGAGAGAAAAAGTTCAGTAACAAATGTCGTCTTTTTGTTGCTAATCTCA
ATACAAACATGACTGAAGATGAGGTCAAAGGTCTGTTCACGCCATTTGGA
GAGTTGAGTGAAATCTTCTTCAACAAAGAAAAAGGATTTGGATTTGTGAG
ATTGGGAGAGAGAGTTTCAACCAAGATTTGTCTCTGCAGATTCATTTGAA
TATCAAATGGCCTGCAAGTGGAGGGATCTCAACCTTGAAGAACAAGAAAA
GAAAGCACAACTTGATCAGGAATTACAGAATGCAAGATACAATGTTCAAA
TGGAAATGGAATCACTCAAAGAAGAACGAGATGCAATGAAGATGAGAGAA
GGTGATTACAGAATAAATGCTGAAGACGCTAAAAGAGCTTTGGATAAAAA
ACTAGTCAAAGGAAGAAATATTCAAGTCCGATATGCAACACATGCTTCCT
CAATAGAATTACATGGATTGGATGAATATGCCTCAAATGAACTTATTAAT
GATGCTATGAGCCAATTTGGAAAAGTTGAAAAGGCAAACATTATCTGTGA
TGAAAGAGGGAAATCTAGGGGATATGCTATTGTTGAATTTGAATGGAAAA
AAAGTGCACAAAAAGTTTTGGATCGGTTCAAGAATGAATTGTTTGTTCTA
GGAAGTTTAGGCAAAGCTTCAGTCCAAGAAACAACCATTCAAATTCTCCA
CAAAGATATCGTTTCAACAATACACCATCCAAAACTAATGCTGAAAAAAC
AACTACGCCAACTGCTATTAAACCAGAAGAAACCAAGGCACCTACCCCAA
ACAATCAACAAAATCGTCAAAGATCCAGATCACCCGTTGACAGAAATACA
ACTTCTAATACTAAACAAGAAGTTAAGACTGAACAGGCCTCACCAGTTGT
TCCTGAAAGTAAACCTGCTGCTACCACGCCAAAACCAGCTGCAAATTCGA
AACCAGCAAACAGTCCAAAACCTGGAAACAAAAATAACACTCCAAACAAA
CCCAATAACACTCCAAACAAACCCAATAACACTCCAAACAAACCTAATAA
CACTGCAAACACCAATAATGACAACAATGAAAGAGTTAGATATACTGGTA
GACCTGGAGAGAAAAAGTTCAGTAACAAATGTCGTCTTTTTGTTGCTAAT
CTCAATACAAACATGACTGAAGATGAGGTCAAAGGTCTGTTCACGCCATT
TGGAGAGTTGAGTGAAATCTTCTTCAACAAAGAAAAAGGATTTGGATTTG
TGAGATTGGGAGAGAGAGTTTCAACCAAGATTTGTCTCTGCAGATTCATT
TGAATATCAAATGGCCTGCAAGTGGAGGGATCTCAACCTTGAAGAACAAG
AAAAGAAAGCACAACTTGATCAGGAATTACAGAATGCAAGATACAATGTT
CAAATGGAAATGGAATCACTCAAAGAAGAACGAGATGCAATGAAGATGAG
AGAAGGTGATTACAGAATAAATGCTGAAGACGCTAAAAGAGCTTTGGATA
AAAAACTAGTCAAAGGAAGAAATATTCAAGTCCGATATGCAACACATGCT
TCCTCAATAGAATTACATGGATTGGATGAATATGCCTCAAATGAACTTAT
TAATGATGCTATGAGCCAATTTGGAAAAGTTGAAAAGGCAAACATTATCT
GTGATGAAAGAGGGAAATCTAGGGGATATGCTATTGTTGAATTTGAATGG
AAAAAAAGTGCACAAAAAGTTTTGGATCGGTTCAAGAATGAATTGTTTGT
TCTAGGAAGTTTAGGCAAAGCTTCAGTCCAAGAAACAACCATTCAAATTC
TCCACAAAGATATCGTTTCAACAATACACCATCCAAAACTAATGCTGAAA
AAACAACTACGCCAACTGCTATTAAACCAGAAGAAACCAAGGCACCTACC
CCAAACAATCAACAAAATCGTCAAAGATCCAGATCACCCGTTGACAGAAA
TACAACTTCTAATACTAAACAAGAAGTTAAGACTGAACAGGCCTCACCAG
TTGTTCCTGAAAGTAAACCTGCTGCTACCACGCCAAAACCAGCTGCAAAT
TCGAAACCAGCAAACAGTCCAAAACCTGGAAACAAAAATAACACTCCAAA
CAAACCCAATAACACTCCAAACAAACCCAATAACACTCCAAACAAACCTA
ATAACACTGCAAACACCAATAATGACAACAATGAAAGAGTTAGATATACT
GGTAGACCTGGAGAGAAAAAGTTCAGTAACAAATGTCGTCTTTTTGTTGC
TAATCTCAATACAAACATGACTGAAGATGAGGTCAAAGGTCTGTTCACGC
CATTTGGAGAGTTGAGTGAAATCTTCTTCAACAAAGAAAAAGGATTTGGA
TTTGTGAGATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002631XLOC_002631Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004668-proteinTCONS_00004668-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004668-exon-sc0000047-1575043694:127093..127696TCONS_00004668-exon-sc0000047-1575043694:127093..127696Clytia hemisphaericaexon
TCONS_00004668-exon-sc0000047-1575043694:126550..126851TCONS_00004668-exon-sc0000047-1575043694:126550..126851Clytia hemisphaericaexon
TCONS_00004668-exon-sc0000047-1575043694:125985..126183TCONS_00004668-exon-sc0000047-1575043694:125985..126183Clytia hemisphaericaexon
TCONS_00004668-exon-sc0000047-1510915933:127093..127696TCONS_00004668-exon-sc0000047-1510915933:127093..127696Clytia hemisphaericaexon
TCONS_00004668-exon-sc0000047-1510915933:126550..126851TCONS_00004668-exon-sc0000047-1510915933:126550..126851Clytia hemisphaericaexon
TCONS_00004668-exon-sc0000047-1510915933:125985..126183TCONS_00004668-exon-sc0000047-1510915933:125985..126183Clytia hemisphaericaexon
TCONS_00004668-exon-sc0000047-1491911889:127093..127696TCONS_00004668-exon-sc0000047-1491911889:127093..127696Clytia hemisphaericaexon
TCONS_00004668-exon-sc0000047-1491911889:126550..126851TCONS_00004668-exon-sc0000047-1491911889:126550..126851Clytia hemisphaericaexon
TCONS_00004668-exon-sc0000047-1491911889:125985..126183TCONS_00004668-exon-sc0000047-1491911889:125985..126183Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000047supercontigsc0000047:125985..127696 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
136.526	134.061	404.163	430.192	905.773	724.32	246.642	274.51	140.039	145.522	138.64	181.746	217.676	190.752	173.822	188.202	178.405	215.55	53.9608	86.505	162.551	154.279	186.91	172.57	243.212	265.739	135.191	120.581	128.504	155.06
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012975NOPS
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00004668 vs. Swiss-Prot (Human)
Match: NONO (Non-POU domain-containing octamer-binding protein OS=Homo sapiens GN=NONO PE=1 SV=4)

HSP 1 Score: 186.422 bits (472), Expect = 1.283e-53
Identity = 96/251 (38.25%), Postives = 149/251 (59.36%), Query Frame = 2 
Query:  446 RPGEKKFSNKCRLFVANLNTNMTEDEVKGLFTPFGELSEIFFNKEKGFGFVRLDYRINAEDAKRALDKKLVKGRNIQVRYATHASSIELHGLDEYASNELINDAMSQFGKVEKANIICDERGKSRGYAIVEFEWKKSAQKVLDRFKNELFVL--------------------------------GREREFQPRFVSADSFEYQMACKWRDLNLEEQEKKAQLDQELQNARYNVQMEMESLKEERDAMKMRE 1102
            +PGEK F+ + RLFV NL  ++TE+E++ LF  +G+  E+F +K+KGFGF+RL+ R  AE AK  LD   ++G+ ++VR+A H++S+ +  L +Y SNEL+ +A S FG+VE+A +I D+RG+  G  IVEF  K +A+K LDR     F+L                                 +ERE  PRF    SFEY+ A +W+ L   E++++ Q+D+ ++ AR  ++MEME+ + E   M MR+
Sbjct:   64 KPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQQFHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLEMEMEAARHEHQVMLMRQ 314
The following BLAST results are available for this feature:
BLAST of TCONS_00004668 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NONO1.283e-5338.25Non-POU domain-containing octamer-binding protein ... [more]
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