TCONS_00004666 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004666
Unique NameTCONS_00004666
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length958

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004666 ID=TCONS_00004666|Name=TCONS_00004666|organism=Clytia hemisphaerica|type=transcript|length=958bp
AAAAGAAAGGGATGTGagttttcaataaaagaaattttgataagGTTCAG
TAAACACAAAAAGTGAGGCTTTTATATAAATGGAAATATTTCGAAAACCA
TAAACAAATCTATATTTCTGACTTAAGAATATGATGCAGAACCAAAATTT
ACATATTCTGAACGAAAAAACTGGTTTTGAGTGTAAAGACAGTTATTAAT
AGCAAATAATGTAATTTTTGTACTGAATAATAGTTTCTTGGGTAATGTTC
CAACAACCATCATTTTTAATGGACTGTTGTAAGTGAAAAATAGCTGCTAT
TCATACTTTAGtatcatttttctctttttctcttttctagaATGCTGGTT
TCGGGGTTGGCAGCCCACAGTCTGGCTCTGGTATTCTACAGCATCAAGGT
GGTGTACTTGGAAACCCTGGTCCGAGAGGTCCTCCAATGAGAATGCGTCC
TCCTTTTGGAGGCCCTCCTCCGAGACACATGGGTCCACGCGGTGGTGATA
TGCAACACAGACCTCGTCGTTAAAcacaaataaatttcaaaaatctcttt
gaaATTTTATTCGATAATCTAATCTACTGAAGTGAACTGACAAGCAAAGA
TgactttttagcttttttaaagaacttGCTTTTAAATGGTTTTATGAACA
AGGATGAACTGTATATATTGTGAGGTGTAGATTCAGAACCCTGAATACAT
TGACAGACAACAAACGAACTTAAACAAAAATCTGTCTTTCAAAAGGATAT
CATTCCTGCAGATTCACTTGGCTTTATTTTGTTTCCTGAGATTGAGTCTC
ANTTTCAAAAGGATATCATTCCTACAGATTCACTTGGCTTTGTTTTGTTT
CCTGAGATCGAGTCTTGTGCGATAACTCAAgtatttttaatatatttttg
gtattactttttgcttttatGAAACCtgatttttatttaaataaaGCTAT
TAACTGAG
Run BLAST on NCBI

transcript from alignment at sc0000047:121143..124659-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004666 ID=TCONS_00004666|Name=TCONS_00004666|organism=Clytia hemisphaerica|type=transcript|length=3517bp|location=Sequence derived from alignment at sc0000047:121143..124659- (Clytia hemisphaerica)
AAAAGAAAGGGATGTGAGTTTTCAATAAAAGAAATTTTGATAAGGTTCAG TAAACACAAAAAGTGAGGCTTTTATATAAATGGAAATATTTCGAAAACCA TAAACAAATCTATATTTCTGACTTAAGAATATGATGCAGAACCAAAATTT ACATATTCTGAACGAAAAAACTGGTTTTGAGTGTAAAGACAGTTATTAAT AGCAAATAATGTAATTTTTGTACTGAATAATAGTTTCTTGGGTAATGTTC CAACAACCATCATTTTTAATGGACTGTTGTAAGTGAAAAATAGCTGCTAT TCATACTTTAGTATCATTTTTCTCTTTTTCTCTTTTCTAGAATGCTGGTT TCGGGGTAAGTACTGCAATTACTTCTGTTTTTTGTTGTTTTTTTCTTCCT CTGCTATTCTACTTTCAAAGGAACAGATATACCGTGAAAGTTTCCTTACT AGAAAAGCAAAAATTATTATTCCTTCTTGCAACCCAAAACAATAGATCTT AACTGTTGTTTTGGTACAAAGTTTATTGGAGATATTTTCATAACTAATTA GTCTTTTCTCAGTATCACTTGTACAAATTCAGATGATAAATTTGATAATT TGTTTCATTTTTATTGTATTGTTAAGTGGATAATAATATCCTTCTTGCAA CCCAGACTAGTATTTATTTTGATTGCTATTTTGGTACACAGCTAAGGAGA TATAATTGTATGATTTTTAATTTCCATATTTTTTATTAATAATTTACTTC AAAACAACACTTTTGGGGATATCATTTATTGCAATCTCTCTTTTGTTTGA AGTGAAATTAAGATCCTTCTTGCAACCCAAATCAAACTGCCTTGTGTTTG TTTTTGGTACTATGTTATAGGAGATATTCACATTTTGGCTTTGTTGGTTA TTATTAAGGCCATTAAATTACCTTCATAAAAAGCACAAAATGTTTAGTTT GCTGAATAACCCTTTTAAAAAAAGGCATAAGCGATGACAAACAAATATAT TTTTAAGATCAGCCAAATCTGTTTTCATTTTTTACAAATGTTATCTTTGT TTATCAGGTTGGCAGCCCACAGTCTGGCTCTGGTATTCTACAGCATCAAG GTGGTGTACTTGGAAACCCTGGTCCGAGAGGTCCTCCAATGAGAATGGTA TGATACAGTTTCTACCAAGAACCTAGTCTTTTTCAAAGTTTGTTTTGGCC TCTATAAGACTTAAAGTGTATTTAATGGTCTCAGTTTGGATGTGTTCCAT GCACCTGAAAATCTGTTCATCAGGCCTAATCAGACAGATATACTGTGAAT TGCTCAATTAATTTAAAGGTGGTATTGCTGCATGTTTTTTTTATTGTTAA ACTTGTCGATACTTGCACTTGCAGAATTTTAAGAAAAATCTTTGAATTGT TGAAATTGACAGTTGATTAATTTTGGGTTCGATATCTGGCCTATGATTGT GCTTTATGATTTGTGTTGCAGTAGTTCATTTAATTTTGCCAATGCCCTTC TCATTGTTCTTCTTGAAATGACAATATCTTTGCCACATTAAAGTTTTAAA ATCTATGTACGAGGAAAGAAATAGAGGAATTGTCAACTTTCTTATGAGAA AATGTAAGTTGTTCAAGGCGCAATTCAAGATAACTTATCACTTAGGTCTG AGTTCAATGGTCAGGGAAAACTTGGAGAGTTTGTTTTACATCAAACATGC ATTGTCAAAATATTTACCTAAATATCATAGTAAAGAGGGGTTCGGAATCT GGTTTATAGAGCTTCGAAACTATGAAAATGGTTTCTGTATGAGAAATTGA TCAAAACCATAGTTTCTTTTGTAAGGGCAAGACATCTTGCTGATTTAGCC ATAGCCATAGTCATAGTAAAACATCTTGATTACTACCCATAGCTCCAATT CGTAAGCAAGTGTCAAGAAATTAAATTTTGGATTACTTTTTTTTTTTTTT CATTGTGTGAGCTCGGGAGCAAAACCACCACTTTGAGGAAAGAGTACTCA CAGTATATCCTGTTCAAAACAGCCTATTTGAAGCAACGAAACTCGTAATG AAGTTAGAAAAAAATGAACTTTTAGCCAAATTTATTATCCAATCCTAGAT AAGGTATTAAATGAGTCTGGGTCTTTCAAGCTGACTTAATATTTTTTTTA AAGAATGCTTTTTCCATTCAGATGAACAGATTTTTCTGGTGCACAAAGTG GTCAAAAACAAAAGCTTAATAGGCATTTTGATATAATATGCAAAGTCATG TCAAGAATATTTCTTGCAATTGTTAATAGTTATCCTCACTTACTGAGATC AATCCTAGAGGGATGATCTTACTACCTTCCCAAAACTAATTTAAAGGATT AGCTTTAGGGGCCACTTGCATATCGATTTTTTCCACGACTCATGTCAAAA TCATGCCAAGTCGTGGGGAACAATTATAGTGACTTTAGAACGCCATGAAT TAAAGACATTATAGCAGAGTTTTCTGTTCTTTGAAAGCTTAAGAATTTTT TATCAGGTTTCAAATATATCCAAGTATGTAATTCAACGCCTTATCAGCCC TTATCAACTGTTGATCTCTGCACGAGACCCAACTCTAAGCGTGAAGATCT GAGTATCTAGAATTTGGTCAGAAAATAAAAATATTGAAACGTCTACCAAT GACAAAACCTTTAATTTAGAAATTGCTACATTTAGACTTTTGCTTAAGAT TTCCCAGTTGAAGAGTAAGAGATTTGGTCATCATTATTAAACCAGACGTA TTATTTAAACACGAAATTCTTTTCCCTCCCCTTAACTTGTCTTGATAGTC CCAGAAAAACCTTCTTTCATAAGCACCTTAAGCTTCAAAGTAATAGTTCA GAGACATTGGCAAATCCAAATTTTCAAGTTTTCATTTGACAAAATCATAA TTTCATAATTCATTACAATATTGCTGGCGCTCCTAGGCAATTAAACCAAT CTTTCTTTTTTATTGTCTAAACTTGAATATGGTACTCATCTAATCATCTT TTAGCGTCCTCCTTTTGGAGGCCCTCCTCCGAGACACATGGGTCCACGCG GTGGTGATATGCAACACAGACCTCGTCGTTAAACACAAATAAATTTCAAA AATCTCTTTGAAATTTTATTCGATAATCTAATCTACTGAAGTGAACTGAC AAGCAAAGATGACTTTTTAGCTTTTTTAAAGAACTTGCTTTTAAATGGTT TTATGAACAAGGATGAACTGTATATATTGTGAGGTGTAGATTCAGAACCC TGAATACATTGACAGACAACAAACGAACTTAAACAAAAATCTGTCTTTCA AAAGGATATCATTCCTGCAGATTCACTTGGCTTTATTTTGTTTCCTGAGA TTGAGTCTCANTTTCAAAAGGATATCATTCCTACAGATTCACTTGGCTTT GTTTTGTTTCCTGAGATCGAGTCTTGTGCGATAACTCAAGTATTTTTAAT ATATTTTTGGTATTACTTTTTGCTTTTATGAAACCTGATTTTTATTTAAA TAAAGCTATTAACTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002630XLOC_002630Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004666-exon-sc0000047-1575043694:124305..124659TCONS_00004666-exon-sc0000047-1575043694:124305..124659Clytia hemisphaericaexon
TCONS_00004666-exon-sc0000047-1575043694:123513..123602TCONS_00004666-exon-sc0000047-1575043694:123513..123602Clytia hemisphaericaexon
TCONS_00004666-exon-sc0000047-1575043694:121143..121655TCONS_00004666-exon-sc0000047-1575043694:121143..121655Clytia hemisphaericaexon
TCONS_00004666-exon-sc0000047-1510915933:124305..124659TCONS_00004666-exon-sc0000047-1510915933:124305..124659Clytia hemisphaericaexon
TCONS_00004666-exon-sc0000047-1510915933:123513..123602TCONS_00004666-exon-sc0000047-1510915933:123513..123602Clytia hemisphaericaexon
TCONS_00004666-exon-sc0000047-1510915933:121143..121655TCONS_00004666-exon-sc0000047-1510915933:121143..121655Clytia hemisphaericaexon
TCONS_00004666-exon-sc0000047-1491911889:124305..124659TCONS_00004666-exon-sc0000047-1491911889:124305..124659Clytia hemisphaericaexon
TCONS_00004666-exon-sc0000047-1491911889:123513..123602TCONS_00004666-exon-sc0000047-1491911889:123513..123602Clytia hemisphaericaexon
TCONS_00004666-exon-sc0000047-1491911889:121143..121655TCONS_00004666-exon-sc0000047-1491911889:121143..121655Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000047supercontigsc0000047:121143..124659 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.3333 10.3653 32.7875 32.8031 114.366 112.625 34.8573 35.4313 14.012 16.7019 17.8363 21.9648 24.0599 25.5098 19.4046 20.18 25.5357 22.7562 7.18813 9.14828 8.76252 8.44334 14.5941 11.8376 34.7138 34.993 8.67698 9.59038 10.9254 10.7954
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004666 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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