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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004666 ID=TCONS_00004666|Name=TCONS_00004666|organism=Clytia hemisphaerica|type=transcript|length=958bp
AAAAGAAAGGGATGTGagttttcaataaaagaaattttgataagGTTCAG
TAAACACAAAAAGTGAGGCTTTTATATAAATGGAAATATTTCGAAAACCA
TAAACAAATCTATATTTCTGACTTAAGAATATGATGCAGAACCAAAATTT
ACATATTCTGAACGAAAAAACTGGTTTTGAGTGTAAAGACAGTTATTAAT
AGCAAATAATGTAATTTTTGTACTGAATAATAGTTTCTTGGGTAATGTTC
CAACAACCATCATTTTTAATGGACTGTTGTAAGTGAAAAATAGCTGCTAT
TCATACTTTAGtatcatttttctctttttctcttttctagaATGCTGGTT
TCGGGGTTGGCAGCCCACAGTCTGGCTCTGGTATTCTACAGCATCAAGGT
GGTGTACTTGGAAACCCTGGTCCGAGAGGTCCTCCAATGAGAATGCGTCC
TCCTTTTGGAGGCCCTCCTCCGAGACACATGGGTCCACGCGGTGGTGATA
TGCAACACAGACCTCGTCGTTAAAcacaaataaatttcaaaaatctcttt
gaaATTTTATTCGATAATCTAATCTACTGAAGTGAACTGACAAGCAAAGA
TgactttttagcttttttaaagaacttGCTTTTAAATGGTTTTATGAACA
AGGATGAACTGTATATATTGTGAGGTGTAGATTCAGAACCCTGAATACAT
TGACAGACAACAAACGAACTTAAACAAAAATCTGTCTTTCAAAAGGATAT
CATTCCTGCAGATTCACTTGGCTTTATTTTGTTTCCTGAGATTGAGTCTC
ANTTTCAAAAGGATATCATTCCTACAGATTCACTTGGCTTTGTTTTGTTT
CCTGAGATCGAGTCTTGTGCGATAACTCAAgtatttttaatatatttttg
gtattactttttgcttttatGAAACCtgatttttatttaaataaaGCTAT
TAACTGAG Run BLAST on NCBI transcript from alignment at sc0000047:121143..124659- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004666 ID=TCONS_00004666|Name=TCONS_00004666|organism=Clytia hemisphaerica|type=transcript|length=3517bp|location=Sequence derived from alignment at sc0000047:121143..124659- (Clytia hemisphaerica)
AAAAGAAAGGGATGTGAGTTTTCAATAAAAGAAATTTTGATAAGGTTCAG
TAAACACAAAAAGTGAGGCTTTTATATAAATGGAAATATTTCGAAAACCA
TAAACAAATCTATATTTCTGACTTAAGAATATGATGCAGAACCAAAATTT
ACATATTCTGAACGAAAAAACTGGTTTTGAGTGTAAAGACAGTTATTAAT
AGCAAATAATGTAATTTTTGTACTGAATAATAGTTTCTTGGGTAATGTTC
CAACAACCATCATTTTTAATGGACTGTTGTAAGTGAAAAATAGCTGCTAT
TCATACTTTAGTATCATTTTTCTCTTTTTCTCTTTTCTAGAATGCTGGTT
TCGGGGTAAGTACTGCAATTACTTCTGTTTTTTGTTGTTTTTTTCTTCCT
CTGCTATTCTACTTTCAAAGGAACAGATATACCGTGAAAGTTTCCTTACT
AGAAAAGCAAAAATTATTATTCCTTCTTGCAACCCAAAACAATAGATCTT
AACTGTTGTTTTGGTACAAAGTTTATTGGAGATATTTTCATAACTAATTA
GTCTTTTCTCAGTATCACTTGTACAAATTCAGATGATAAATTTGATAATT
TGTTTCATTTTTATTGTATTGTTAAGTGGATAATAATATCCTTCTTGCAA
CCCAGACTAGTATTTATTTTGATTGCTATTTTGGTACACAGCTAAGGAGA
TATAATTGTATGATTTTTAATTTCCATATTTTTTATTAATAATTTACTTC
AAAACAACACTTTTGGGGATATCATTTATTGCAATCTCTCTTTTGTTTGA
AGTGAAATTAAGATCCTTCTTGCAACCCAAATCAAACTGCCTTGTGTTTG
TTTTTGGTACTATGTTATAGGAGATATTCACATTTTGGCTTTGTTGGTTA
TTATTAAGGCCATTAAATTACCTTCATAAAAAGCACAAAATGTTTAGTTT
GCTGAATAACCCTTTTAAAAAAAGGCATAAGCGATGACAAACAAATATAT
TTTTAAGATCAGCCAAATCTGTTTTCATTTTTTACAAATGTTATCTTTGT
TTATCAGGTTGGCAGCCCACAGTCTGGCTCTGGTATTCTACAGCATCAAG
GTGGTGTACTTGGAAACCCTGGTCCGAGAGGTCCTCCAATGAGAATGGTA
TGATACAGTTTCTACCAAGAACCTAGTCTTTTTCAAAGTTTGTTTTGGCC
TCTATAAGACTTAAAGTGTATTTAATGGTCTCAGTTTGGATGTGTTCCAT
GCACCTGAAAATCTGTTCATCAGGCCTAATCAGACAGATATACTGTGAAT
TGCTCAATTAATTTAAAGGTGGTATTGCTGCATGTTTTTTTTATTGTTAA
ACTTGTCGATACTTGCACTTGCAGAATTTTAAGAAAAATCTTTGAATTGT
TGAAATTGACAGTTGATTAATTTTGGGTTCGATATCTGGCCTATGATTGT
GCTTTATGATTTGTGTTGCAGTAGTTCATTTAATTTTGCCAATGCCCTTC
TCATTGTTCTTCTTGAAATGACAATATCTTTGCCACATTAAAGTTTTAAA
ATCTATGTACGAGGAAAGAAATAGAGGAATTGTCAACTTTCTTATGAGAA
AATGTAAGTTGTTCAAGGCGCAATTCAAGATAACTTATCACTTAGGTCTG
AGTTCAATGGTCAGGGAAAACTTGGAGAGTTTGTTTTACATCAAACATGC
ATTGTCAAAATATTTACCTAAATATCATAGTAAAGAGGGGTTCGGAATCT
GGTTTATAGAGCTTCGAAACTATGAAAATGGTTTCTGTATGAGAAATTGA
TCAAAACCATAGTTTCTTTTGTAAGGGCAAGACATCTTGCTGATTTAGCC
ATAGCCATAGTCATAGTAAAACATCTTGATTACTACCCATAGCTCCAATT
CGTAAGCAAGTGTCAAGAAATTAAATTTTGGATTACTTTTTTTTTTTTTT
CATTGTGTGAGCTCGGGAGCAAAACCACCACTTTGAGGAAAGAGTACTCA
CAGTATATCCTGTTCAAAACAGCCTATTTGAAGCAACGAAACTCGTAATG
AAGTTAGAAAAAAATGAACTTTTAGCCAAATTTATTATCCAATCCTAGAT
AAGGTATTAAATGAGTCTGGGTCTTTCAAGCTGACTTAATATTTTTTTTA
AAGAATGCTTTTTCCATTCAGATGAACAGATTTTTCTGGTGCACAAAGTG
GTCAAAAACAAAAGCTTAATAGGCATTTTGATATAATATGCAAAGTCATG
TCAAGAATATTTCTTGCAATTGTTAATAGTTATCCTCACTTACTGAGATC
AATCCTAGAGGGATGATCTTACTACCTTCCCAAAACTAATTTAAAGGATT
AGCTTTAGGGGCCACTTGCATATCGATTTTTTCCACGACTCATGTCAAAA
TCATGCCAAGTCGTGGGGAACAATTATAGTGACTTTAGAACGCCATGAAT
TAAAGACATTATAGCAGAGTTTTCTGTTCTTTGAAAGCTTAAGAATTTTT
TATCAGGTTTCAAATATATCCAAGTATGTAATTCAACGCCTTATCAGCCC
TTATCAACTGTTGATCTCTGCACGAGACCCAACTCTAAGCGTGAAGATCT
GAGTATCTAGAATTTGGTCAGAAAATAAAAATATTGAAACGTCTACCAAT
GACAAAACCTTTAATTTAGAAATTGCTACATTTAGACTTTTGCTTAAGAT
TTCCCAGTTGAAGAGTAAGAGATTTGGTCATCATTATTAAACCAGACGTA
TTATTTAAACACGAAATTCTTTTCCCTCCCCTTAACTTGTCTTGATAGTC
CCAGAAAAACCTTCTTTCATAAGCACCTTAAGCTTCAAAGTAATAGTTCA
GAGACATTGGCAAATCCAAATTTTCAAGTTTTCATTTGACAAAATCATAA
TTTCATAATTCATTACAATATTGCTGGCGCTCCTAGGCAATTAAACCAAT
CTTTCTTTTTTATTGTCTAAACTTGAATATGGTACTCATCTAATCATCTT
TTAGCGTCCTCCTTTTGGAGGCCCTCCTCCGAGACACATGGGTCCACGCG
GTGGTGATATGCAACACAGACCTCGTCGTTAAACACAAATAAATTTCAAA
AATCTCTTTGAAATTTTATTCGATAATCTAATCTACTGAAGTGAACTGAC
AAGCAAAGATGACTTTTTAGCTTTTTTAAAGAACTTGCTTTTAAATGGTT
TTATGAACAAGGATGAACTGTATATATTGTGAGGTGTAGATTCAGAACCC
TGAATACATTGACAGACAACAAACGAACTTAAACAAAAATCTGTCTTTCA
AAAGGATATCATTCCTGCAGATTCACTTGGCTTTATTTTGTTTCCTGAGA
TTGAGTCTCANTTTCAAAAGGATATCATTCCTACAGATTCACTTGGCTTT
GTTTTGTTTCCTGAGATCGAGTCTTGTGCGATAACTCAAGTATTTTTAAT
ATATTTTTGGTATTACTTTTTGCTTTTATGAAACCTGATTTTTATTTAAA
TAAAGCTATTAACTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004666-exon-sc0000047-1575043694:124305..124659 | TCONS_00004666-exon-sc0000047-1575043694:124305..124659 | Clytia hemisphaerica | exon |
| TCONS_00004666-exon-sc0000047-1575043694:123513..123602 | TCONS_00004666-exon-sc0000047-1575043694:123513..123602 | Clytia hemisphaerica | exon |
| TCONS_00004666-exon-sc0000047-1575043694:121143..121655 | TCONS_00004666-exon-sc0000047-1575043694:121143..121655 | Clytia hemisphaerica | exon |
| TCONS_00004666-exon-sc0000047-1510915933:124305..124659 | TCONS_00004666-exon-sc0000047-1510915933:124305..124659 | Clytia hemisphaerica | exon |
| TCONS_00004666-exon-sc0000047-1510915933:123513..123602 | TCONS_00004666-exon-sc0000047-1510915933:123513..123602 | Clytia hemisphaerica | exon |
| TCONS_00004666-exon-sc0000047-1510915933:121143..121655 | TCONS_00004666-exon-sc0000047-1510915933:121143..121655 | Clytia hemisphaerica | exon |
| TCONS_00004666-exon-sc0000047-1491911889:124305..124659 | TCONS_00004666-exon-sc0000047-1491911889:124305..124659 | Clytia hemisphaerica | exon |
| TCONS_00004666-exon-sc0000047-1491911889:123513..123602 | TCONS_00004666-exon-sc0000047-1491911889:123513..123602 | Clytia hemisphaerica | exon |
| TCONS_00004666-exon-sc0000047-1491911889:121143..121655 | TCONS_00004666-exon-sc0000047-1491911889:121143..121655 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000047 | supercontig | sc0000047:121143..124659 - |
Blast
The following BLAST results are available for this feature:
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