TCONS_00004664 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00004664
Unique Name	TCONS_00004664
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2048

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000047:115243..124659-

transcript sequence

>TCONS_00004664 ID=TCONS_00004664|Name=TCONS_00004664|organism=Clytia hemisphaerica|type=transcript|length=2048bp
AAAAGAAAGGGATGTGagttttcaataaaagaaattttgataagGTTCAG
TAAACACAAAAAGTGAGGCTTTTATATAAATGGAAATATTTCGAAAACCA
TAAACAAATCTATATTTCTGACTTAAGAATATGATGCAGAACCAAAATTT
ACATATTCTGAACGAAAAAACTGGTTTTGAGTGTAAAGACAGTTATTAAT
AGCAAATAATGTAATTTTTGTACTGAATAATAGTTTCTTGGGTAATGTTC
CAACAACCATCATTTTTAATGGACTGTTGTAAGTGAAAAATAGCTGCTAT
TCATACTTTAGtatcatttttctctttttctcttttctagaATGCTGGTT
TCGGGGTTGGCAGCCCACAGTCTGGCTCTGGTATTCTACAGCATCAAGGT
GGTGTACTTGGAAACCCTGGTCCGAGAGGTCCTCCAATGAGAATGCGTCC
TCCTTTTGGAGGCCCTCCTCCGAGACACATGGGTCCACGCGGTGGTGATA
TGCAACACAGACCTCGTCGTTAAAcacaaataaatttcaaaaatctcttt
gaaATTTTATTCGATAATCTAATCTACTGAAGTGAACTGACAAGCAAAGA
TGACTTCTTagcttttttaaagaacttGCTTTTAAATGGTTTTATGAACA
AGGATGAACTGTACATATTGTGAGGTGTAGATTCAGAACCCTGAATACGT
TGACAGACAACAAACGAACTTAAAACAAAAATCTGTCTTTCAAAAGGATA
TCATTCCTACAGATTCACTTGGCTTTGTTTTGTTTCCTGAGATCGAGTCT
TGTGCGATAACTCAAgtatttttaatatatttttggtattactttttgct
tttatGAAACCtgatttttatttaaataaaGCTATTAACTGAGTagtaag
cttattctgaactggTTCCATCAATTACTTTAAAGTACAAAATGCTTGAT
CAGTCATTTAGGTTATGCCTAAAGTTGCAAATGGATTTCTTTAATGCtat
aattttcaagaattttattcTTTCTATGCCTGTTTCATCTTTTTCGCTGG
TCCTTTTAGAAAAGGTTCTTTATTGATCTTGTTGGCTTAACCTGATTTAT
TCACTTATTTCTTTCGACAAAATAGATACCAATGCGAAGCTTAACAGATT
TGAACACACCAATTAACTTGGACACATGTGAGATTTAggttgaaaatatt
atatggtgacttttgttttttgtttttcccaTTCGATGGGATTGGCCCCT
TTTGAGATTTATGGCTTCACATGGGGAATCGTAATAATAGTTTATCACAG
TTTGTACCATGAACAACAGTTGCCATTCCAGCATACTTTATTGCTCAGTT
ATTGCTGAAGAGTGAATATCTACAGTTATTGTAAATTTCTAAACGGAGTg
tcttttaaaggtgttttcttttcaattttgctATTACAATTTTCTTGGTT
GCACCCCTTAtatttaagttttgaaaaaagttgtaTGGTGGTTGTAAGTA
TCAAAATTGGATTTTGGTGCACCCCTTAtatttaagttttgaaaaaagtt
gtaTGGTGGAAAAAGTATGGCAGCAGTCTACAATAAGGCAGCAGTCTACA
ATAAGGCcaagtatttttttgttttttttttgtttttttttggacctacc
tagagatcctttaaattaaccctcgttcgtccgttcgtttgttaccagct
tttctcaggttTGGATCATAGGAACTTTACGAATTTTGACACATAGATGC
AAAATGGTATTCCCGGTGCCCGATTATCATATATACATTTTTAAGGGGAT
CAATTTCAGCcacaaaatggccaaaaatggatttttgtcctttgtgaaaa
attgcatcgtaaattttatttgatttttccaTAAAAGCAGGTTGCTTGCT
ATCATATCATAGGTTAaaaatggctgaagcagatttttgctgaaaaaatt
tCAGCTTAAAAATCTTTAGCTTATGAGTCattatttataagcattttctt
aaTCCAAATTACCCAATTATTGTTAATCAATATATAGTATATTATAAC

Run BLAST on NCBI

transcript from alignment at sc0000047:115243..124659-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00004664 ID=TCONS_00004664|Name=TCONS_00004664|organism=Clytia hemisphaerica|type=transcript|length=9417bp|location=Sequence derived from alignment at sc0000047:115243..124659- (Clytia hemisphaerica)
AAAAGAAAGGGATGTGAGTTTTCAATAAAAGAAATTTTGATAAGGTTCAG
TAAACACAAAAAGTGAGGCTTTTATATAAATGGAAATATTTCGAAAACCA
TAAACAAATCTATATTTCTGACTTAAGAATATGATGCAGAACCAAAATTT
ACATATTCTGAACGAAAAAACTGGTTTTGAGTGTAAAGACAGTTATTAAT
AGCAAATAATGTAATTTTTGTACTGAATAATAGTTTCTTGGGTAATGTTC
CAACAACCATCATTTTTAATGGACTGTTGTAAGTGAAAAATAGCTGCTAT
TCATACTTTAGTATCATTTTTCTCTTTTTCTCTTTTCTAGAATGCTGGTT
TCGGGGTAAGTACTGCAATTACTTCTGTTTTTTGTTGTTTTTTTCTTCCT
CTGCTATTCTACTTTCAAAGGAACAGATATACCGTGAAAGTTTCCTTACT
AGAAAAGCAAAAATTATTATTCCTTCTTGCAACCCAAAACAATAGATCTT
AACTGTTGTTTTGGTACAAAGTTTATTGGAGATATTTTCATAACTAATTA
GTCTTTTCTCAGTATCACTTGTACAAATTCAGATGATAAATTTGATAATT
TGTTTCATTTTTATTGTATTGTTAAGTGGATAATAATATCCTTCTTGCAA
CCCAGACTAGTATTTATTTTGATTGCTATTTTGGTACACAGCTAAGGAGA
TATAATTGTATGATTTTTAATTTCCATATTTTTTATTAATAATTTACTTC
AAAACAACACTTTTGGGGATATCATTTATTGCAATCTCTCTTTTGTTTGA
AGTGAAATTAAGATCCTTCTTGCAACCCAAATCAAACTGCCTTGTGTTTG
TTTTTGGTACTATGTTATAGGAGATATTCACATTTTGGCTTTGTTGGTTA
TTATTAAGGCCATTAAATTACCTTCATAAAAAGCACAAAATGTTTAGTTT
GCTGAATAACCCTTTTAAAAAAAGGCATAAGCGATGACAAACAAATATAT
TTTTAAGATCAGCCAAATCTGTTTTCATTTTTTACAAATGTTATCTTTGT
TTATCAGGTTGGCAGCCCACAGTCTGGCTCTGGTATTCTACAGCATCAAG
GTGGTGTACTTGGAAACCCTGGTCCGAGAGGTCCTCCAATGAGAATGGTA
TGATACAGTTTCTACCAAGAACCTAGTCTTTTTCAAAGTTTGTTTTGGCC
TCTATAAGACTTAAAGTGTATTTAATGGTCTCAGTTTGGATGTGTTCCAT
GCACCTGAAAATCTGTTCATCAGGCCTAATCAGACAGATATACTGTGAAT
TGCTCAATTAATTTAAAGGTGGTATTGCTGCATGTTTTTTTTATTGTTAA
ACTTGTCGATACTTGCACTTGCAGAATTTTAAGAAAAATCTTTGAATTGT
TGAAATTGACAGTTGATTAATTTTGGGTTCGATATCTGGCCTATGATTGT
GCTTTATGATTTGTGTTGCAGTAGTTCATTTAATTTTGCCAATGCCCTTC
TCATTGTTCTTCTTGAAATGACAATATCTTTGCCACATTAAAGTTTTAAA
ATCTATGTACGAGGAAAGAAATAGAGGAATTGTCAACTTTCTTATGAGAA
AATGTAAGTTGTTCAAGGCGCAATTCAAGATAACTTATCACTTAGGTCTG
AGTTCAATGGTCAGGGAAAACTTGGAGAGTTTGTTTTACATCAAACATGC
ATTGTCAAAATATTTACCTAAATATCATAGTAAAGAGGGGTTCGGAATCT
GGTTTATAGAGCTTCGAAACTATGAAAATGGTTTCTGTATGAGAAATTGA
TCAAAACCATAGTTTCTTTTGTAAGGGCAAGACATCTTGCTGATTTAGCC
ATAGCCATAGTCATAGTAAAACATCTTGATTACTACCCATAGCTCCAATT
CGTAAGCAAGTGTCAAGAAATTAAATTTTGGATTACTTTTTTTTTTTTTT
CATTGTGTGAGCTCGGGAGCAAAACCACCACTTTGAGGAAAGAGTACTCA
CAGTATATCCTGTTCAAAACAGCCTATTTGAAGCAACGAAACTCGTAATG
AAGTTAGAAAAAAATGAACTTTTAGCCAAATTTATTATCCAATCCTAGAT
AAGGTATTAAATGAGTCTGGGTCTTTCAAGCTGACTTAATATTTTTTTTA
AAGAATGCTTTTTCCATTCAGATGAACAGATTTTTCTGGTGCACAAAGTG
GTCAAAAACAAAAGCTTAATAGGCATTTTGATATAATATGCAAAGTCATG
TCAAGAATATTTCTTGCAATTGTTAATAGTTATCCTCACTTACTGAGATC
AATCCTAGAGGGATGATCTTACTACCTTCCCAAAACTAATTTAAAGGATT
AGCTTTAGGGGCCACTTGCATATCGATTTTTTCCACGACTCATGTCAAAA
TCATGCCAAGTCGTGGGGAACAATTATAGTGACTTTAGAACGCCATGAAT
TAAAGACATTATAGCAGAGTTTTCTGTTCTTTGAAAGCTTAAGAATTTTT
TATCAGGTTTCAAATATATCCAAGTATGTAATTCAACGCCTTATCAGCCC
TTATCAACTGTTGATCTCTGCACGAGACCCAACTCTAAGCGTGAAGATCT
GAGTATCTAGAATTTGGTCAGAAAATAAAAATATTGAAACGTCTACCAAT
GACAAAACCTTTAATTTAGAAATTGCTACATTTAGACTTTTGCTTAAGAT
TTCCCAGTTGAAGAGTAAGAGATTTGGTCATCATTATTAAACCAGACGTA
TTATTTAAACACGAAATTCTTTTCCCTCCCCTTAACTTGTCTTGATAGTC
CCAGAAAAACCTTCTTTCATAAGCACCTTAAGCTTCAAAGTAATAGTTCA
GAGACATTGGCAAATCCAAATTTTCAAGTTTTCATTTGACAAAATCATAA
TTTCATAATTCATTACAATATTGCTGGCGCTCCTAGGCAATTAAACCAAT
CTTTCTTTTTTATTGTCTAAACTTGAATATGGTACTCATCTAATCATCTT
TTAGCGTCCTCCTTTTGGAGGCCCTCCTCCGAGACACATGGGTCCACGCG
GTGGTGATATGCAACACAGACCTCGTCGTTAAACACAAATAAATTTCAAA
AATCTCTTTGAAATTTTATTCGATAATCTAATCTACTGAAGTGAACTGAC
AAGCAAAGATGACTTTTTAGCTTTTTTAAAGAACTTGCTTTTAAATGGTT
TTATGAACAAGGATGAACTGTATATATTGTGAGGTGTAGATTCAGAACCC
TGAATACATTGACAGACAACAAACGAACTTAAACAAAAATCTGTCTTTCA
AAAGGATATCATTCCTGCAGATTCACTTGGCTTTATTTTGTTTCCTGAGA
TTGAGTCTCANTTTCAAAAGGATATCATTCCTACAGATTCACTTGGCTTT
GTTTTGTTTCCTGAGATCGAGTCTTGTGCGATAACTCAAGTATTTTTAAT
ATATTTTTGGTATTACTTTTTGCTTTTATGAAACCTGATTTTTATTTAAA
TAAAGCTATTAACTGAGTAGTAAGCTTATTCTGAACTGGTTCTATCAATT
AATTAGAGTACATAATTCTAAGTCAGATCATACCTAAAGTTGCAAATTGA
TTTCCTTTAATGCTATAATTTTCAAGAATTTTATCCTTTCTACCTGTTTC
ATCTTTTTCGCTGGTCCTTTTAGAAAAGGTTCTTTATTGATCTTGTTGGC
TTAACCTGATTTATTCACTTATTTCTTTCGACAAAATAGATACCAATGCG
AAGCTTAACAGATTTGAACACACCAATTAACTTGGACACATGTGAGATTT
AGGTTGAAAATATTATATGGTGACTTTTGTTTTTTGTTTTTCCCATTCGA
TGGGATTGGCCCCTTTTGAGATTTATGGCTTCACATGGGGAATCGTAATA
ATAGTTTATCACAGTTTGTACCATGAACAACAGTTGCCATTCCAGCATAC
TTTATTGCTCAGTTATTGCTGAAGAGTGAATATCTACAGTTATTGTAAAT
TTCTAAACGGAGTGTCTTTTAAAGGTGTTTTCTTTTCAATTTTGCTATTA
CAATTTTCTTGGTTGCACCCCTTATATTTAAGTTTTGAAAAAAGTTGTAT
GGTGGTTGTAAGTATCAAAATTGGATTTTGGTGCACCCCTTATATTTAAG
TTTTGAAAAAAGTTGTATGGTGGAAAAAGTATGGCAGCAGTCTACAATAA
GGCAGCAGTCTACAATAAGGCCAAGTATTTTTTTGTTTTTTTTTTNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCATGTCGTATATATA
CGACATCGGCAAATCAGGTTACTAAAAAAAATTACCCCTCGGCAAATGGA
TTGGGGTACAAAAACAAGGTACCGGCACGCAAAGGGTTGAGGAAATTCCT
TAGGGTGGATTTAAAAAAAGGGGGTTTTGAGATGAGGAGAACGATAGAAA
GTTTAGTATTAACATTCCTTATGTGAGAATAAGTGTCGAACATTTTTTAT
CTCATTGGTCAAAATAGGAACACACATTGGGTCACTTTACTTGAAGGCCC
GGTTATGCAAAAATGATATTAGTATGAATCATGTACTTGTAAGTAAAAGT
TTAAAGATCAGTATACTCACTCGAGTTGAAACTTGTAATAAATTCCAAGC
CCATTATGAAGAAACAAACAAACATTGTTAAAGGTAAGAAAGTTTTGTAT
TGTTCAAGGGGGTGGTCACTCGCTCAATTTTAAGGTAGAATCACAGTCAA
GTATCACTTTCAAAGTCTGATTCAAAATGATGCAATGATTTTAAGTACCT
TTAAAGTCCGATAGAATTAGCATAAAAAGGCGGCTGAAATGTGTTTGAAA
ATCACTTATATATTTACTGACCCAGCATATTTCAATATTTTAGCTGAGTC
AGTAAAACATTGAANTTTTTTATTGTCTAAACTTGAATATGGTACTCATC
TAATCATCTTTTAGCGTCCTCCTTTTGGAGGCCCTCCTCCGAGACACATG
GGTCCACGCGGTGGTGATATGCAACACAGACCTCGTCGTTAAACACAAAT
AAATTTCAAAAATCTCTTTGAAATTTTATTCGATAATCTAATCTACTGAA
GTGAACTGACAAGCAAAGATGACTTCTTAGCTTTTTTAAAGAACTTGCTT
TTAAATGGTTTTATGAACAAGGATGAACTGTACATATTGTGAGGTGTAGA
TTCAGAACCCTGAATACGTTGACAGACAACAAACGAACTTAAAACAAAAA
TCTGTCTTTCAAAAGGATATCATTCCTACAGATTCACTTGGCTTTGTTTT
GTTTCCTGAGATCGAGTCTTGTGCGATAACTCAAGTATTTTTAATATATT
TTTGGTATTACTTTTTGCTTTTATGAAACCTGATTTTTATTTAAATAAAG
CTATTAACTGAGTAGTAAGCTTATTCTGAACTGGTTCCATCAATTACTTT
AAAGTACAAAATGCTTGATCAGTCATTTAGGTTATGCCTAAAGTTGCAAA
TGGATTTCTTTAATGCTATAATTTTCAAGAATTTTATTCTTTCTATGCCT
GTTTCATCTTTTTCGCTGGTCCTTTTAGAAAAGGTTCTTTATTGATCTTG
TTGGCTTAACCTGATTTATTCACTTATTTCTTTCGACAAAATAGATACCA
ATGCGAAGCTTAACAGATTTGAACACACCAATTAACTTGGACACATGTGA
GATTTAGGTTGAAAATATTATATGGTGACTTTTGTTTTTTGTTTTTCCCA
TTCGATGGGATTGGCCCCTTTTGAGATTTATGGCTTCACATGGGGAATCG
TAATAATAGTTTATCACAGTTTGTACCATGAACAACAGTTGCCATTCCAG
CATACTTTATTGCTCAGTTATTGCTGAAGAGTGAATATCTACAGTTATTG
TAAATTTCTAAACGGAGTGTCTTTTAAAGGTGTTTTCTTTTCAATTTTGC
TATTACAATTTTCTTGGTTGCACCCCTTATATTTAAGTTTTGAAAAAAGT
TGTATGGTGGTTGTAAGTATCAAAATTGGATTTTGGTGCACCCCTTATAT
TTAAGTTTTGAAAAAAGTTGTATGGTGGAAAAAGTATGGCAGCAGTCTAC
AATAAGGCAGCAGTCTACAATAAGGCCAAGTATTTTTTTGTTTTTTTTTT
GTTTTTTTTTGGACCTACCTAGAGATCCTTTAAATTAACCCTCGTTCGTC
CGTTCGTTTGTTACCAGCTTTTCTCAGGTTTGGATCATAGGAACTTTACG
AATTTTGACACATAGATGCAAAATGGTATTCCCGGTGCCCGATTATCATA
TATACATTTTTAAGGGGATCAATTTCAGCCACAAAATGGCCAAAAATGGA
TTTTTGTCCTTTGTGAAAAATTGCATCGTAAATTTTATTTGATTTTTCCA
TAAAAGCAGGTTGCTTGCTATCATATCATAGGTTAAAAATGGCTGAAGCA
GATTTTTGCTGAAAAAATTTCAGCTTAAAAATCTTTAGCTTATGAGTCAT
TATTTATAAGCATTTTCTTAATCCAAATTACCCAATTATTGTTAATCAAT
ATATAGTATATTATAAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002630	XLOC_002630	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00004664-exon-sc0000047-1575043694:124305..124659	TCONS_00004664-exon-sc0000047-1575043694:124305..124659	Clytia hemisphaerica	exon
TCONS_00004664-exon-sc0000047-1575043694:123513..123602	TCONS_00004664-exon-sc0000047-1575043694:123513..123602	Clytia hemisphaerica	exon
TCONS_00004664-exon-sc0000047-1575043694:115243..116845	TCONS_00004664-exon-sc0000047-1575043694:115243..116845	Clytia hemisphaerica	exon
TCONS_00004664-exon-sc0000047-1510915933:124305..124659	TCONS_00004664-exon-sc0000047-1510915933:124305..124659	Clytia hemisphaerica	exon
TCONS_00004664-exon-sc0000047-1510915933:123513..123602	TCONS_00004664-exon-sc0000047-1510915933:123513..123602	Clytia hemisphaerica	exon
TCONS_00004664-exon-sc0000047-1510915933:115243..116845	TCONS_00004664-exon-sc0000047-1510915933:115243..116845	Clytia hemisphaerica	exon
TCONS_00004664-exon-sc0000047-1491911889:124305..124659	TCONS_00004664-exon-sc0000047-1491911889:124305..124659	Clytia hemisphaerica	exon
TCONS_00004664-exon-sc0000047-1491911889:123513..123602	TCONS_00004664-exon-sc0000047-1491911889:123513..123602	Clytia hemisphaerica	exon
TCONS_00004664-exon-sc0000047-1491911889:115243..116845	TCONS_00004664-exon-sc0000047-1491911889:115243..116845	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000047	supercontig	sc0000047:115243..124659 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.05889	8.03435	25.5994	30.9786	37.592	18.6774	8.48036	10.2161	3.63143	3.61962	3.72419	4.92433	5.24987	5.4585	5.49141	5.4539	5.74901	6.81571	3.44326	3.23393	11.0204	11.9586	10.5534	10.1693	2.84832	6.57584	11.1553	10.974	8.86853	9.00498

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00004664 vs. Swiss-Prot (Human)

BLAST of TCONS_00004664 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00004664 (transcript) - C. hemisphaerica