TCONS_00004658 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004658
Unique NameTCONS_00004658
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2462

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004658 ID=TCONS_00004658|Name=TCONS_00004658|organism=Clytia hemisphaerica|type=transcript|length=2462bp
cgcttaaatttcctcattcgccgtaccagatataaaaagcttccgtcgtg
cctggagcacgaatccgttagtggatgccagcagcctaggtaagggtccg
agggttgAAAGTtgggcggcaccccccgtcagctcgcaaccctagtataC
GAAAATTTGAACTAAATTGTTAAATTGTAGTTAATTTATGTGTTCCTGTG
TTCTGTCCCCGTTTTGTCGGAGACGTAAAATTAGGCTTTCTTGTCTAGAA
AATCTGAATTAAGCAAAAAATCGGTCATAATTTCAGAATTGGCATCAAAT
AGTAATATTATCGTAGCTTCAATTTGCCAATAGTATGTTAAGGATTCCTA
TCTACTTAGTACCTTAAAACAATAGCCGGGGGtgtagctcagtggtagag
cgctcgctttgcatgcgagaggccCGGGGTTCGATCCCCCGCACCTCCAC
AGTTTTTGTCTACCAATAACTTGTCGAATGAAAGGATATCTACATTATGA
TCCCAGTTCATGCATAAGTGTAAGTAGCTTTATTCTTACCTCAACATTTT
TCATCCATGATTTGGTTGTAAAGCCCTGTGCAAAAAGGGGTTTGCTCTCG
TATGAGCATGCCGTTGAAAGCTGACAAACAGCAGCCATAATTAAAACACT
TTTCTACCTTTACAGGGTCTCCTAGTCTAAAACTGACCCAACAATTTTCC
CAGTCCACCCGGCCACTAAAATTTTCATAAgtgatttgttgttgtttgtt
tcCTTCTTCGTTTTTCTGTTTCTGTAATTTGGGCCTGTTGTTAGTGACAA
CGATGAACCGATGACGTAATTAATGTAAATTAGCTTACGCaagcattttt
ttacttttcgaaGATTCAATATGGCGGCGGCGCTACCTCCAACtttgaaa
caaataaattcTTATCTAAAACTGGCAAAAGAATACGACAAGAGGGACCC
GACAGTGGCTTATTTTTGTCGGATGTATGCAGTCCATAAAGGGATCAAGT
TGGACAGTAAGAGTCCAGAAGCAAAGAAATTTCTCTTTGGCATGATGGAC
AATTTGGAAAATGTCAAGAAAGAGCTGACAGGACAGGGTGATGAGAGTGT
GACCAATGACATCGTTGGACAAGCTCACCTTGAAAACATCACTGTCAATC
TATTCACATGGGCAGATGGTGAGGATAGAAAAGCCAATTTCAACAAGAAT
GTGGTCAAAGCGTTTTATTCGTCAAGCTTGTTATACGATGTCCTGACACA
GTTCAGTGAACTTAGCGAAGAGTGCTCTATGCAGCAGAGATATGCCAAAT
GGAAGGCTACTGAAATTCACAAATGTCTACAAAGAGGAGAGACCCCTGTT
CCTGGACCCGCTGGGTCGGAATTCGAAGGCACTGAATTTGGTGCCACTAC
TTCAGGAATCGGAAGCATGCAATTGAACGATGGCTCCGCAAACACACCTT
ACCCTCCTGCAAATATGGATCAACCTGGACCATCGGGATACACGCCGGAG
CCGGTCCCTGCCCCTCGAAAGccTTCAAACCAAGCACCGCCACCATCATC
AGGATATGTTGCGCCGGCACAGGCTAGTGTAGAGAATTCACATGTAGACT
TTCAAGAATGTTCTAAACTATGTAAATATGCAATGAGTGCTCTTGATTAC
GAAGATGTAGACACAGCTGTTGCCAACCTCACCAAAGCTCTAAACATGTT
ACAAAATAGATGATAATATACTATACTTACTATGAATGATAATAGCAAAA
GTGTAATACCGATGGGCAGAAGAATTTGGAACCGCCATTTTTATTTGACT
CAATTTTGAATTCGGTAACATCTTTTTACGGATAATATTGTTGAATTACT
TCTTCTTTGtttgaatcttttgattttattgTCAAAATTAGAACGCTTCA
TTAAGAAGGGGGTATTATTAGAGAGGTTAATTTTGTTCCAATCATAACAC
AAGCAAAGTCCTCCTTTTAATAAATTACGTTTCGAACATCACTTgcttcg
ttttgaaattattgccatggtgattatctcccagcggattttattaaaac
tactttctatccataaaaaaattatttaatgcctcaagagacataatcac
catggtaattgtttgcatacaaggcaagtgatgttcgtgacgtaatttat
gaaaaggtcaatTCAAAGATTGTTATTTCTTCGAAGATGTAACTGTAATC
GAAAAATGACCCGAGGCTAAATTTTTTTGAGTAAATCGTtgtatttcatt
tcatttcaccAAACTTATTTCAATGTATCTATTTCGGGCAGTTTAACATC
AATAAGAtattattATGGTTCCTACActtcaattttaaaacacaactcTT
CTCGTATTTAAAAGGTTAAGTCCCaaaataaatttgtaaatagtaaTTTT
TGTAATTCATCTTTACTCGAAATAAACCTATACGAAAGAGAAATTTAATC
CGTCAAAGTTCT
Run BLAST on NCBI

transcript from alignment at sc0000047:59580..73549-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004658 ID=TCONS_00004658|Name=TCONS_00004658|organism=Clytia hemisphaerica|type=transcript|length=13970bp|location=Sequence derived from alignment at sc0000047:59580..73549- (Clytia hemisphaerica)
CGCTTAAATTTCCTCATTCGCCGTACCAGATATAAAAAGCTTCCGTCGTG
CCTGGAGCACGAATCCGTTAGTGGATGCCAGCAGCCTAGGTAAGGGTCCG
AGGGTTGAAAGTTGGGCGGCACCCCCCGTCAGCTCGCAACCCTAGTATAC
GAAAATTTGAACTAAATTGTTAAATTGTAGTTAATTTATGTGTTCCTGTG
TTCTGTCCCCGTTTTGTCGGAGACGTAAAATTAGGCTTTCTTGTCTAGAA
AATCTGAATTAAGCAAAAAATCGGTCATAATTTCAGAATTGGCATCAAAT
AGTAATATTATCGTAGCTTCAATTTGCCAATAGTATGTTAAGGATTCCTA
TCTACTTAGTACCTTAAAACAATAGCCGGGGGTGTAGCTCAGTGGTAGAG
CGCTCGCTTTGCATGCGAGAGGCCCGGGGTTCGATCCCCCGCACCTCCAC
AGTTTTTGTCTACCAATAACTTGTCGAATGAAAGGATATCTACATTATGA
TCCCAGTTCATGCATAAGTGTAAGTAGCTTTATTCTTACCTCAACATTTT
TCATCCATGATTTGGTTGTAAAGCCCTGTGCAAAAAGGGGTTTGCTCTCG
TATGAGCATGCCGTTGAAAGCTGACAAACAGCAGCCATAATTAAAACACT
TTTCTACCTTTACAGGGTCTCCTAGTCTAAAACTGACCCAACAATTTTCC
CAGTCCACCCGGCCACTAAAATTTTCATAAGTGATTTGTTGTTGTTTGTT
TCCTTCTTCGTTTTTCTGTTTCTGTAATTTGGGCCTGTTGTTAGTGACAA
CGATGAACCGATGACGTAATTAATGTAAATTAGCTTACGCAAGCATTTTT
TTACTTTTCGAAGATTCAATATGGCGGCGGCGCTACCTCCAACTTTGAAA
CAAATAAATTCTTATCTAAAACTGGCAAAAGAATACGACAAGAGGGACCC
GACAGTGGCTTATTTTTGTAAGTACAAAATCTTGAATTATTTTGCTACTA
AAATCAGTGCTTACAGCTGAGGAAAGAGGGGAATTTACCTGTCATAAAGT
GAAAAACATGCTACCGTGGAGATTGGCTGGGTAACTTGCATCAGTTCAGT
CCAGACCCCCGCGCTCGATAGGATCGATCATCGGAACGGCTCNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTCTATCATCGATCTTTTATCGATCTTATCG
ACCCTATCGACTCTTTCTAAAAATCGAGCTCTAATATTAATCGATCTTTC
TCGCTATCGATTACCTATTGACACCTATCGATTACCTATCGACACCTATC
GATTTAAAATCGATGACGAATCGATTTATAATCGATGACGAATCGATTAA
CGATCGATGACGAATCGAGTAACAATCGATGACGAATCGATTAACAATCG
ATTAACGATCGATGACGAATCGATTAACAATCGATTAACGATCGATTAAC
AATCGATTAACGATCGATGACGAATCGATTAACGATCGATGACGAATCGA
TATACTCGATTGAAATACTAGCTCGATATTGGATCAACGAAGGATCGATA
CTCAAGACTTTTTAATGGCTGAATCTTCCATCGATCTCCTATCCGGATCG
ATAAGTAATCCATCGATCACATATCGATCCGTCATCGAGCCGTTCCGATG
ATCGATCCTATCGAGCGCGGGGGTCTGGTTCAGTGCATAGCCCTCAAATG
AATGACTTGTCTGGTCGTTAAAATACAAAGTTAAATCAAAACAAAAATGG
TAGAGTAGAGCTGCAAGCGGAGCTGCGTAGTTGTATTTTAATGACCAGAA
GACAGGTCATTCATTTGAGGGCTATGCCTATAATGCATGTTGTTAGCCTC
CACTGATGCAAGGGCAACAACACTACACTGTCGTCAGTTAATCAAGGACC
CTCCCAGCGCTCTGTAAACTTCCAGAGTTTTCCGGAGCAGCTAAAAAGAC
ACTATTTTTCTCTCCGGAAAGTTCTGGAGCTCTCCCGGAGCAAGTGATTT
TTATCAGTTTCTAAAAAACCGTTTAAGCATCATGGTTACAATAAAAATAT
TTCTCCCCAGGTAGAGAGGTCAGTCAAAATTTCAAACTCATTTTCAAAAT
GCCAAACCAAGTTTAATGAAGGGTCACTCATCTTTTAGCCTTTAGTAGTT
TTTCAGATATTCCATTTTGAAGTTCTATTTTTTTGAAGAATTATGTTCAA
AAACCTCCTGCCATCTTCTTGTAACATTTCCACAGCACTGAAATCGAAAG
TGTTTTACAAAAAAAGTTTGCACAGGAAGTTTGGGGCGAGAGTGTTTTTC
CGTAGGGCGAGCCATAGAGCACAAGTGTTACGCGTAAGCCAAATCGCGTA
TTACGAACAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCAATAAATCAATGAAAT
AATTTGAAATAAAAAGTAAACAAACCTTGAACCTTTCATGAATCCAAATA
AATAAAAGTATTCATCTAAAGTGAAGATTACATTTCATTTTCAAAATAAA
ATGATTTCCAAACCAACCTAAAGTCAGTGTCTGCCAACTAAAAATTTCTC
TGCGGGGTCACTGGCAAGGAGTTACGACTTCAGACTTTAGATTCCAATTC
TTGTATAGGCTGCAACTACACTTCCAAATGATCTGTATTACAAAGACTTG
CAAATGGGTGCATAAGTTAAGAAAATGAGATTATCATGTAGCAAGGGGGT
TTTGTTTTTAAAAACAAACTTCAAAATAAAATTGTTAATGAACTTCTTAC
TTAAAATATCACTTACTTACATAATTCATTTATGATATAACACCCCTTTC
TTAGATAAATGGCCTCTTAAAGTCTTTTATGTTTGCCGCAAGAAGGGAGA
AACATTTAATTTGACCCCCGGTTTTTTCTCTCTTTTTCTAGCTAATTCCC
GCGTGTTAGTGTAGACACAACTTTAATCCGGGGAAATGAAGCGTTTTCAT
TGGTCTAAAATCATGGATGGTCATGTGACCAGAATTTTTATCTAGGGAAA
TGCTGTTGCCGCAATGTTTTGCTTTAGTGAGATTGACCATTTTGTTGTTT
AGATTTGAGCGGGCAAAATTTCTGTACAAACCAAAATATGGCTTCGTTGG
AATACCGGTTGAAACACTTGTGAGAGACGGGGGTCACTATACCATTAACT
TTCCCTTACAATGGAGCAGATATAGATACAATAAGAATAATTGCACAGTA
TGAAAGAGGAAGTTCTAAGCTCTTTGCTGTTACCTTAGACCACATAAGAA
TTCAACGGAGTACTTGAAAATTTTTGGATTTACTTCTTTGATTCAAATTT
GCTCAAAGACAATGCAGGAACCCAATGATCGCAAGGTTTCATAAGAAAGC
TTGATCTAGCATCTTTCAAGCTCAAAAACCGTTTGTTACGAGACCGATTT
GCTCCATTGTAATCTTAACAAAAGTAACCATGGTTTTTCAAAATTTGAGT
GCCGTGATCTTGTTCACAACAATCAGGGCTACCCTAGCTCTGAAAATCGA
AGATTTCGAATGAACAAAGATCGTTAAAGACTTTTGGTTTTTTGAAATGC
AAAGATGAATAAATTCTTTTCTACTAAGAAGAAAAAAACATGTAGATATA
TATGTAACTTTATCATTTAGATATTAAATTCTGAATTTCATTTTCATACA
TTTTTCCTTGCCGTGTCTTTTGTACCACGGGACAGTAAGCGGGAGTGGGA
GTGGAACTCCGGAGCGTTCCGGAGTTCCAGTGCAGACCGCCAATCACCGA
AAATTGTGGTCCAGGATACTGGAAGTACTCCGGAATCTTCCGGTGCTGGG
GAGCACGAAAAAACATTACTTTTTGCTCCGGGTTTTGGTCCTGGTAAGTG
TTAAGTCACACTAGGAAATCAAGCTTTCAGAAAAACAACAAGGATGAGAG
CTACCTGAATAAAGTTCAAGCTCCCAAGACAATTAATTAAAACTGGAAAT
CTTAAAATGAGACAATGACCGATTGCGAACGTGCAGAGCCAGAAATATCA
ACCAACCAATTATTATTATATTTCCATTCATTTGACTGAAGCAAAATCTG
TTTCTACAACTCTTGATAGAGTATATTGCTATTGGTATCTTAAATACCGT
CAACTGCTCTAACTTGGGACTGTCTGACAAAACATGGGACGGCAATTCGG
CCAACATTTCACCAAACCTCCAAAGTCATTTGATTTGAGTTAATGAACGG
CGTATTAAAAAATACACAATTTCTCTTTCGCACCAAGTAGGCTTTTAAAT
CTTTTAATGTGAAAAATCCGTAGTGGAACACACGCGAGTGTCTGGAACGA
AGAAGAACAAGTTAGTGGCAAAACGATGGAGCCTTTGACGTCACTCGCGT
GGCAAATTACACACTCGTTATTTGTTATTCCCATCAGGTGATAGGCGGTT
AGACGGCAGGCGTTCTCTAATTCTCCAATCAGCGTCCGGTCATTTTGAAT
GAAAACAAAAAAGTTAAAAAGGGTGCGCTATCAGTGAAAGTTATTGTGAC
ATGTTATGACAAAAAGTATGATTGATAAACTTGTGGAGTTATCAAAACAA
ATTTGTTGTCAAAAGAGATTTAACAGTAAGTGAAAATACAGGCCAGATAT
CAACAGTCCCATGTTTCGACCAATTGTCCTAAGTTAGAGCAGTTGATGGT
TGAATGTTCTAAAAGTATAGAGCTTGATCTCCCTAGCAGTGCAGTTGGAA
CTTCGATTTTTGAGGATTCGGTTCGTTGAAATGGTGGCTGAATTTCCGTC
CCATGTTTTGTCACATAGTCCCAAGTTAGAGCAGTTGGATTTTGAGCTTG
GATATCCAGGCTACCATGCCTATTGCTATTTTCAGTCAGGACTTCCTTGG
TCTTTCAGGGTCTTTTTGAATATCAGTTCAGATAGAATAAAAACATACCT
GATCAACACAAAAAAACCTTCTGTTTTGCGTTTACTCTTTCCTACACAAC
AACTTTTGCTTTTGCTTATGTAGGTTTTGAAATTCACAAGTAATGAACCT
CTTGTCGTTTTATCTAAATAAATCTTGTTGAAAACCTTCTGTCAAGTTTC
ATTCCGTACATTTTTTATCTACATGGTGAACTGGTGTCCCTGAGTTCCCG
ATAATTAAAAATTTGGCACTTTTCTGTGGACACGATTGGGGGTACCGCCA
TCGGGAAATATTTTTCATGAAAATTTACCATATTTTAACTGTAATATAAT
CTTCATAGGAAACAAATATCAAATTTGATTCTCTTTTGCTCGTATTTCAA
AATTTCAAGATTAAAAGAACTATTTACAAAAATCATATTCTTTAACAGGC
ATCCAATTGCTATTGACATATTTGTGAATCTCCAAGCGATTTTAAGTACA
TAAAAATCTCCTGGCTTGATACCGCAAAACTATTGGCATCTTACCGGTAA
CACTCTTGTTGAGTCCAGCAATCCATCAATTACAACCGGCAATAAGCCGG
CAGCCAGTTTGCTGGCAGCATTTGTGTAAATTCTATTTTTAGAAAAGGAT
TTGGTTTAAGGAGAGACTTGCTGGCAATCTACCGGCAATGAAGAAAAGTA
TACAGTAATATGAGGACAACAAAGAAAAAGAGCCAGCAATTTGCTGACAA
CAAAGAAAAAGAGTAATTTGCCGGCAACAAAGAAAATTTATTTACAGCTT
TTGCAGGCACTTTTCCCCCTATGTCATCCGGCAATTTGCAGGCTACTGTT
ATAACATTGCCGGCTATACCAAACAGATAACTGGCAATTCGCCGGCAAAA
ACAAAGCTGGCTAGTTGCCGGCAAGAAGTTCATGTCCTTTGAATTGCTTG
TATGGTCACATTTAATGATGTCATAATCAATGTCAGCGTCGTTTGACATC
TTTGGTGAAAATGTCAACTCCATTGATGACATCATCGCCACCTGATGACA
TCATCATTCTTTGAAAATATCAAAATTAGGACCCCCCTCTAACTTTTTTT
CACTCTAATGTTCATTGCTCAAATTTTGTGAGGCAGCTCCACGTGACATG
CATTTTTGGGGCAGAGGGTCAATCTTTTGCCACTTGTTGCTATCGTGTAC
TTTACAGCCAGCCCTTTTTGCCTAAACAGTCCTAGGCTACTGTATCTAGT
GATTGGCAAATGCTAGGTGTTGATAACACAAGTTTACAGCCAAAACTTCA
GCGAAATCAGACAAGTGGTTATGCTGAAAGTGAGCAATTTAGGTAAAAAA
TGGACCGGTCTGTAAAATACCAACTGCTCACTTGACTAAATTGAAATTTT
GCACACTGTCTTAGATGGTCAATATTTATTACTGGTGAAAAGCTCCATTC
GTTCCTGAGTTCTGGCAGGTGGTCAATGTTTATTTTACAGACCGGTCTGC
AAAGTACCAAATATATTCTGGTAGGAAAAAATTTTTTTAGTTGAAAAATT
AGCCTTCAGAAACAATTATTTCAGTCAAATTGAACAAGTCAAAAAGTCAA
TACATGATTTTGGTCAAGTTTACATTCTGCACGGTTAAATACCAACCAGA
CAGGTGGCCGAACCGAGATGCTTCCCCTAGTAAAAAAAGAGAAGGTGCTT
GGGATACAGGAATTGCTATCTATCCATGAAAATTGGACATTGCTGTTTTG
TTATCTCAAAGTGCAGGCTTAAGAAGTAGCAACGTGCATTTTAACTTTCT
TCTCCTTATTGGATTCAAGATAGCATACTAGCATACAATACCAGCATGCA
AATCTAGAGTTGTCTGTCAATCGACTGATGAAAGAGTTTCCTCTACAGGT
CAGCAGTTCGTTGATTGAGGGAGGCTTTCTAAAAATTTACATTTTTTTGA
AAAGTGTGTTGTATTTTATAGATAATTAAAGAAATTTAAAAAATTTTAAC
ACAATTTAGAAACTAGTTATAAATCTGTTTTTCAGTGGTATGAAAGTTAA
TGGCTAGTGTAAAAGATATTTTAAGTTATCCCTGACAGTTGTGAACAAGA
GTTTAGATATAAGGGAATAAGAACTGTAGGTAAACATTAAAAATGATTCT
TTCTTGTAGGTCGGATGTATGCAGTCCATAAAGGGATCAAGTTGGACAGT
AAGAGTCCAGAAGCAAAGAAATTTCTCTTTGGCATGATGGACAATTTGGA
AAATGTAAGTATTTACAACCGATTCTCTGATAAAAGTTATTTTAAAAGTA
TTCAACATTTGCTTTTTTTCTTTAACCTCAATATAAATCCTACGCAATTT
TCTTTCAAATGTAAAGCTGGATATCCACTGGAAAAATAAGTTCGTCGCGA
ATTTGTTTGTCGTACAAAATAAATCCAGGCTTGCAATAGATTTAAAATTC
CAGACATATATCTGTATGATTTATTTTTTGTTTTAAACAGATATTTGCGA
CGAACTTATTTTTTTCAGTGGACACCCAGATTAAAAAATGATAAAAAATA
ATTTCATAAAATGGCTCAAATCTTAAACTGTAACTGTAAGGTTAAAGCAA
AACTTCACAAATCAAATCTCGCAAAAAATCTTATATGTTTGTTTTGTTTC
CCGTTGAAAAATTAACGTANCATGCAATAGATTTAAAATTCCAGACATAT
GTCTGTATGATTTATTTTTTGTTAACAGGTATTTGCAACGAACTTATTTT
TTTCAGTGGACACCCAGATTAAAAAATGATAAAAAATAATTTTATAAAAT
GGCTCAAATCTTAAACTGTACTCAGGTTAAAGCAAAACTTCACAAATCAA
ATCTCGCAAAAAATCTTGTATGTTTGTTTTGTTTCCCGTTGAAAAATCGA
CGTTAATTTATTTTTTCTCAAGGTCAAGAAAGAGCTGACAGGACAGGGTG
ATGAGAGTGTGACCAATGACATCGTTGGACAAGCTCACCTTGAAAACATC
ACTGTCAATCTATTCACATGGGCAGATGGTGAGGATAGAAAAGCCAATTT
CAACAAGTGAGTTTCCTTTCAAAGCGAAACTAGTGGATGGTGAGAGTATC
ACTTTTTTTTCTTTTTTTTTAATGCATCCTGGACTTAAAAGATTTATTTT
ACAATCTTTGGCTAATTTTTGGACCTACCACGGAGGTCCTTTAAATTAAC
CCATGTCTTTTCGTTGTTTCGTTCGTCTGTTACCAGCTTTTCTCGAGATT
GGCTCATTAGTTTTTTCTGATTTTTGGCACAACGGTGCAAACGACCCAAA
TTGTGACGGAGCCCGATTTTTTTGGACGCAAAATTGCTTCATTAGTTTTT
TCTGATTTTTGGCAAAAAGATTGAGGGCAAGGTTCTCTAAAAAATAGCTG
AAGTCGTTTTTTCTGAAAAGTTGCTTTTCGCCGTAAAAATCTGTTTTTCT
TATTTGGGGAAATTCCCTTCTGTCTCTTTTTGGGGAAAAAAATTCAGGGC
AAATTTGGGTCAAAAAGTGCCCAAAGATCTTGTGAAATAGGCTTCATAAG
TTTGTTTTCGATTTTTTGTATAAAGACAGAGAGCAAGGCTTTCTAAGTCT
GAAGCCGATTTCTCTGGAAAATTTATTTTGACGGTAAAAATCGGATTTTC
TTGTTGGTAAATCCTGTTTTTTGCGATTAGCTTGTTGTTTTTTCTGATTT
TTCGGTTTGCCATTTTTTCTATAAATTATAATGCTCATCTCAAAATGTTA
GTTTTTGACGGCGTAGATTTGAGTAAATCACCATAATGTCTTGGGAAAGT
AGTTTAAAGTATATTATTTTCATTTGTTTTCTAGGAATGTGGTCAAAGCG
TTTTATTCGTCAAGCTTGTTATACGATGTCCTGACACAGTTCAGTGAACT
TAGCGAAGAGGTACGGTGTATACTCCAGTATAAATATCAAGTCTTGTGTG
CGTTTAGCCTGTACCAAACTCTTTTTTGCTGACTGAAAAGATACACGGCA
AGCTTTTTCAAAATATAAAAAACGCCCGTTACGGGCGGAGTGGTACAGGC
TATTGTGCGTTATATTGCAGTGAAAACTTTCTGAATTTTCAACCGTGTAT
TTTTTTGTTACGGCCACCACGTTCTTAAAACCTGTCTACGTCCAATGGTT
AAGGGAAATCATTTACTGTATCTCCTAACATTTGCTTACATAGTATTTTC
AATCAACAAAAGAAAACATAAACATTTTTCTCTCTTTCGTGCCAAGCGTA
TTACCGAGATTATGTATGCGTTATTTTCTGCGACGGAGACGGTAAGGTTT
CAATTTATCTATATCCTGACTGACTGAGGACGACGGTAAATCAGCACTTT
TACCGTCCTCGATTTCGCGGCTCAGAAATGCGGTTTATTCCGAATCGCTT
CAGTCACTCTACCATCCTCAAAAGAGCAAATACATAAACTCGCTATTGTT
TATTCCTAGAGGGGCGTCTCATTTTCTATCATAATAAGGAATATCTTTAA
TGGCTTTTGAATTATTTAAAAATCAAATTTTAAAAGTTCTTACATAAAAA
GGAACAAAGAAAAAAGTTTTTGACCCTTCAAACTATTTTTGTTTAGTGCT
CTATGCAGCAGAGATATGCCAAATGGAAGGCTACTGAAATTCACAAATGT
CTACAAAGAGGAGAGACCCCTGTTCCTGGACCCGCTGGGTCGGAATTCGA
AGGCACTGAATTTGGTGCCACTACTTCAGGAATCGGAAGCATGCAATTGA
ACGATGGCTCCGCAAACACACCTTACCCTCCTGCAAATATGGATCAACCT
GGACCATCGGGATACACGCCGGAGCCGGTCCCTGCCCCTCGAAAGGTACA
CGTCATTGACTTCCAAGCCCGAAGAGCTAGAATTGAGACTCCTCCAGGAC
GCCTGCGCGTTGTTTTTATAAAAACGCCGGCTTGAAAGTAAAATCCATCG
CTAGATTTAAAAAATGCAGTCCTCAAAAACAAAGGAACCACTAGATACAA
TCCGTCGTCATGATTGCGGCGCGTTCTAGACGCGTTCTTCGATTAGTCTT
TTCATGCCTTGGCTAACAGTTATATTTTGATGTGAAATGAATAGCATGGT
TTGGGCTATGAGTTTGAATAGACCTTATCGGAGTTTTTTATTTTTCTAAA
AAAGCGATGCATTGTGGGATTGTTCCGAGTGTATTACAATAGAAACCTCT
TAGGGGAATTCTATTGTAATACACTCGAAACAATCTCACAATGCATCGCT
TTTTTAGAAAAATCAAAAACTCCGATAAGGTCTATTTCCTAGCTTTTAAA
TGACAGTTGAAAGAATAGCAAATCATATTTTGTTATCCTCCCACTGGTCA
CACTTTCTTAGAAAAAAATGCAAGTTTCCAAACTTGTTTTAATTTTAGTA
AGTGAGGACAGCGTTAAATTTGAATTTCTTACTGTAATTTTTATGCCAAA
ATTTGCTTCCCAGGTCGATCCCGTCCTATAAATCAGGTTATAAAAATAAG
GGATGTGTCTCCTGTCTATGGCCGATTTCTTTTTGGACTTACCCCGGTGG
AGGTCCTATAAATTAACCGTTGGATGTTCGTCCGTTCGTTCGTTCGTTCG
TTCGTTCGTTCGTTCGTTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGGCTCATTAGTTTTTTCT
GATTTTTTGCACAAAGATGCATAACTATAAACCCTCGAATGTGACGGAGC
CCGATTTTCGAAAAAAAAAAATTTTCGGGCAAATTTGGGCCAAAAACCGG
CTAAAAAACAGGTTTTTTGGACTTGGCGAAATATTGGATCATTAATTTTT
TCTGATTTTTTGTATGAAAGTAGGGTACCATCATAGGTGAAAAATGGCTC
AAGCAGATTTTTGTAAAAAATGAATTTTTCAGCTCAAAAAACGCATCTTT
ATCTATAAGAATCACTATTAATAAGCATACATCAATGTTCTTAGCCAAAT
TACTCAATATTTTGATGAGATCGATGTTTTTTTTGCTCACGAAGTCTTGA
ATATAAAAGAATATTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNTTGATCATTTTCATCATTATTCA
TGATGTTTTGGACATGATTTATGAGAAGTTTGATGCATACTGGCTCTCTA
ACAATGTGGAAAGACTTTGGAGAAATTTTGGCCGTGAATCGTCAGCTGAT
CGAATCGAGTGCTTAAATCTTGCATATGGCTATGGNGAATGATTGTTTAA
TGGTCACGCTCACGTAGATATCAATTATATATGTGTTAAATGCATAACCA
GGTAGGTCCATAAAAGTATCACTTGTAAAAACTTGACACTCTTTGGAATG
AAAAAAGGAAATTAACTAATTTTTAAGCTAGACTGTATTTAAATTGATTA
ATCTTTTGTAATTTTTGTTTTCTTTTTAGCCTTCAAACCAAGCACCGCCA
CCATCATCAGGATATGTTGCGCCGGCACAGGCTAGTGTAGAGAATTCACA
TGTAGACTTTCAAGAATGTTCTAAACTATGTAAATATGCAATGAGTGCTC
TTGATTACGAAGATGTAGACACAGCTGTTGCCAACCTCACCAAAGCTCTA
AACATGTTACAAAATAGATGATAATATACTATACTTACTATGAATGATAA
TAGCAAAAGTGTAATACCGATGGGCAGAAGAATTTGGAACCGCCATTTTT
ATTTGACTCAATTTTGAATTCGGTAACATCTTTTTACGGATAATATTGTT
GAATTACTTCTTCTTTGTTTGAATCTTTTGATTTTATTGTCAAAATTAGA
ACGCTTCATTAAGAAGGGGGTATTATTAGAGAGGTTAATTTTGTTCCAAT
CATAACACAAGCAAAGTCCTCCTTTTAATAAATTACGTTTCGAACATCAC
TTGCTTCGTTTTGAAATTATTGCCATGGTGATTATCTCCCAGCGGATTTT
ATTAAAACTACTTTCTATCCATAAAAAAATTATTTAATGCCTCAAGAGAC
ATAATCACCATGGTAATTGTTTGCATACAAGGCAAGTGATGTTCGTGACG
TAATTTATGAAAAGGTCAATTCAAAGATTGTTATTTCTTCGAAGATGTAA
CTGTAATCGAAAAATGACCCGAGGCTAAATTTTTTTGAGTAAATCGTTGT
ATTTCATTTCATTTCACCAAACTTATTTCAATGTATCTATTTCGGGCAGT
TTAACATCAATAAGATATTATTATGGTTCCTACACTTCAATTTTAAAACA
CAACTCTTCTCGTATTTAAAAGGTTAAGTCCCAAAATAAATTTGTAAATA
GTAATTTTTGTAATTCATCTTTACTCGAAATAAACCTATACGAAAGAGAA
ATTTAATCCGTCAAAGTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002627XLOC_002627Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004658-exon-sc0000047-1575043694:72583..73549TCONS_00004658-exon-sc0000047-1575043694:72583..73549Clytia hemisphaericaexon
TCONS_00004658-exon-sc0000047-1575043694:66046..66140TCONS_00004658-exon-sc0000047-1575043694:66046..66140Clytia hemisphaericaexon
TCONS_00004658-exon-sc0000047-1575043694:65244..65377TCONS_00004658-exon-sc0000047-1575043694:65244..65377Clytia hemisphaericaexon
TCONS_00004658-exon-sc0000047-1575043694:64390..64465TCONS_00004658-exon-sc0000047-1575043694:64390..64465Clytia hemisphaericaexon
TCONS_00004658-exon-sc0000047-1575043694:63455..63703TCONS_00004658-exon-sc0000047-1575043694:63455..63703Clytia hemisphaericaexon
TCONS_00004658-exon-sc0000047-1575043694:59580..60520TCONS_00004658-exon-sc0000047-1575043694:59580..60520Clytia hemisphaericaexon
TCONS_00004658-exon-sc0000047-1510915933:72583..73549TCONS_00004658-exon-sc0000047-1510915933:72583..73549Clytia hemisphaericaexon
TCONS_00004658-exon-sc0000047-1510915933:66046..66140TCONS_00004658-exon-sc0000047-1510915933:66046..66140Clytia hemisphaericaexon
TCONS_00004658-exon-sc0000047-1510915933:65244..65377TCONS_00004658-exon-sc0000047-1510915933:65244..65377Clytia hemisphaericaexon
TCONS_00004658-exon-sc0000047-1510915933:64390..64465TCONS_00004658-exon-sc0000047-1510915933:64390..64465Clytia hemisphaericaexon
TCONS_00004658-exon-sc0000047-1510915933:63455..63703TCONS_00004658-exon-sc0000047-1510915933:63455..63703Clytia hemisphaericaexon
TCONS_00004658-exon-sc0000047-1510915933:59580..60520TCONS_00004658-exon-sc0000047-1510915933:59580..60520Clytia hemisphaericaexon
TCONS_00004658-exon-sc0000047-1491911889:72583..73549TCONS_00004658-exon-sc0000047-1491911889:72583..73549Clytia hemisphaericaexon
TCONS_00004658-exon-sc0000047-1491911889:66046..66140TCONS_00004658-exon-sc0000047-1491911889:66046..66140Clytia hemisphaericaexon
TCONS_00004658-exon-sc0000047-1491911889:65244..65377TCONS_00004658-exon-sc0000047-1491911889:65244..65377Clytia hemisphaericaexon
TCONS_00004658-exon-sc0000047-1491911889:64390..64465TCONS_00004658-exon-sc0000047-1491911889:64390..64465Clytia hemisphaericaexon
TCONS_00004658-exon-sc0000047-1491911889:63455..63703TCONS_00004658-exon-sc0000047-1491911889:63455..63703Clytia hemisphaericaexon
TCONS_00004658-exon-sc0000047-1491911889:59580..60520TCONS_00004658-exon-sc0000047-1491911889:59580..60520Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000047supercontigsc0000047:59580..73549 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.423948	0.420261	0.368997	0.78381	0.140665	0.185184	0	0.057662	0.053996	0.185022	0.455056	0.0963361	0.208218	0	0.0833384	0.0955079	0	0.043701	0	0.0577512	0.0481869	0.0796346	0.27819	0.61956	0.116861	0.206382	0.529939	0.371163	0.22416	0.0564419
Blast
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BLAST of TCONS_00004658 vs. Swiss-Prot (Human)
Match: VTA1 (Vacuolar protein sorting-associated protein VTA1 homolog OS=Homo sapiens GN=VTA1 PE=1 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.210e-67
Identity = 129/292 (44.18%), Postives = 174/292 (59.59%), Query Frame = 1 
Query:  895 LKQINSYLKLAKEYDKRDPTVAYFCRMYAVHKGIKLDSKSPEAKKFLFGMMDNLENVKKELTGQGD-ESVTNDIVGQAHLENITVNLFTWADGEDRKANFNKNVVKAFYSSSLLYDVLTQFSELSEECSMQQRYAKWKATEIHKCLQRGETPVPGPAGSEFEGTEFGATTSGIGSM--QLNDGSANTPYPPANMD-------QPGPSGYTPEPVPAPRKPSN-------QAPPPSSGYVAPA------QASVENSHVDFQECSKLCKYAMSALDYEDVDTAVANLTKALNML 1701
             K I  +L+ A+E+DKRDP VAY+CR+YA+  G+K+DSK+PE +KFL  +MD LE +KK+L   GD E++T +IVG AHLEN  + +F +AD EDR   F+KN++K+FY++SLL DV+T F EL++E    ++YA+WKAT IH CL+ GETP  GP G E +        +G  S+  Q    S+++ Y P+NM        Q  P  + P   PA    S        Q  P +   + PA      Q  V  +  DF    K CKYA SAL YEDV TAV NL KAL +L
Sbjct:   14 FKSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDSKTPECRKFLSKLMDQLEALKKQL---GDNEAITQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVITVFGELTDENVKHRKYARWKATYIHNCLKNGETPQAGPVGIEEDNDIEENEDAGAASLPTQPTQPSSSSTYDPSNMPSGNYTGIQIPPGAHAPANTPAEVPHSTGVASNTIQPTPQTIPAIDPALFNTISQGDVRLTPEDFARAQKYCKYAGSALQYEDVSTAVQNLQKALKLL 302
The following BLAST results are available for this feature:
BLAST of TCONS_00004658 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VTA11.210e-6744.18Vacuolar protein sorting-associated protein VTA1 h... [more]
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