TCONS_00004657 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004657
Unique NameTCONS_00004657
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1719

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004657 ID=TCONS_00004657|Name=TCONS_00004657|organism=Clytia hemisphaerica|type=transcript|length=1719bp
gcgctcgctttgcatgcgagaggccCGGGGTTCGATCCCCCGCACCTCCA
CAGTTTTTGTCTACCAATAACTTGTCGAATGAAAGGATATCTACATTATG
ATCCCAGTTCATGCATAAGTATTCAATATGGCGGCGGCGCTACCTCCAAC
tttgaaacaaataaattcTTATCTAAAACTGGCAAAAGAATACGACAAGA
GGGACCCGACAGTGGCTTATTTTTGTCGGATGTATGCAGTCCATAAAGGG
ATCAAGTTGGACAGTAAGAGTCCAGAAGCAAAGAAATTTCTCTTTGGCAT
GATGGACAATTTGGAAAATGTCAAGAAAGAGCTGACAGGACAGGGTGATG
AGAGTGTGACCAATGACATCGTTGGACAAGCTCACCTTGAAAACATCACT
GTCAATCTATTCACATGGGCAGATGGTGAGGATAGAAAAGCCAATTTCAA
CAAGAATGTGGTCAAAGCGTTTTATTCGTCAAGCTTGTTATACGATGTCC
TGACACAGTTCAGTGAACTTAGCGAAGAGTGCTCTATGCAGCAGAGATAT
GCCAAATGGAAGGCTACTGAAATTCACAAATGTCTACAAAGAGGAGAGAC
CCCTGTTCCTGGACCCGCTGGGTCGGAATTCGAAGGCACTGAATTTGGTG
CCACTACTTCAGGAATCGGAAGCATGCAATTGAACGATGGCTCCGCAAAC
ACACCTTACCCTCCTGCAAATATGGATCAACCTGGACCATCGGGATACAC
GCCGGAGCCGGTCCCTGCCCCTCGAAAGccTTCAAACCAAGCACCGCCAC
CATCATCAGGATATGTTGCGCCGGCACAGGCTAGTGTAGAGAATTCACAT
GTAGACTTTCAAGAATGTTCTAAACTATGTAAATATGCAATGAGTGCTCT
TGATTACGAAGATGTAGACACAGCTGTTGCCAACCTCACCAAAGCTCTAA
ACATGTTACAAAATAGATGATAATATACTATACTTACTATGAATGATAAT
AGCAAAAGTGTAATACCGATGGGCAGAAGAATTTGGAACCGCCATTTTTA
TTTGACTCAATTTTGAATTCGGTAACATCTTTTTACGGATAATATTGTTG
AATTACTTCTTCTTTGtttgaatcttttgattttattgTCAAAATTAGAA
CGCTTCATTAAGAAGGGGGTATTATTAGAGAGGTTAATTTTGTTCCAATC
ATAACACAAGCAAAGTCCTCCTTTTAATAAATTACGTTTCGAACATCACT
Tgcttcgttttgaaattattgccatggtgattatctcccagcggatttta
ttaaaactactttctatccataaaaaaattatttaatgcctcaagagaca
taatcaccatggtaattgtttgcatacaaggcaagtgatgttcgtgacgt
aatttatgaaaaggtcaatTCAAAGATTGTTATTTCTTCGAAGATGTAAC
TGTAATCGAAAAATGACCCGAGGCTAAATTTTTTTGAGTAAATCGTtgta
tttcatttcatttcaccAAACTTATTTCAATGTATCTATTTCGGGCAGTT
TAACATCAATAAGAtattattATGGTTCCTACActtcaattttaaaacac
aactcTTCTCGTATTTAAAAGGTTAAGTCCCaaaataaatttgtaaatag
taaTTTTTGTAATTCATCTTTACTCGAAATAAACCTATACGAAAGAGAAA
TTTAATCCGTCAAAGTTCT
Run BLAST on NCBI

protein sequence of TCONS_00004657-protein

>TCONS_00004657-protein ID=TCONS_00004657-protein|Name=TCONS_00004657-protein|organism=Clytia hemisphaerica|type=polypeptide|length=280bp
MAAALPPTLKQINSYLKLAKEYDKRDPTVAYFCRMYAVHKGIKLDSKSPE
AKKFLFGMMDNLENVKKELTGQGDESVTNDIVGQAHLENITVNLFTWADG
EDRKANFNKNVVKAFYSSSLLYDVLTQFSELSEECSMQQRYAKWKATEIH
KCLQRGETPVPGPAGSEFEGTEFGATTSGIGSMQLNDGSANTPYPPANMD
QPGPSGYTPEPVPAPRKPSNQAPPPSSGYVAPAQASVENSHVDFQECSKL
CKYAMSALDYEDVDTAVANLTKALNMLQNR
Run BLAST on NCBI

transcript from alignment at sc0000047:59580..73150-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004657 ID=TCONS_00004657|Name=TCONS_00004657|organism=Clytia hemisphaerica|type=transcript|length=13571bp|location=Sequence derived from alignment at sc0000047:59580..73150- (Clytia hemisphaerica)
GCGCTCGCTTTGCATGCGAGAGGCCCGGGGTTCGATCCCCCGCACCTCCA
CAGTTTTTGTCTACCAATAACTTGTCGAATGAAAGGATATCTACATTATG
ATCCCAGTTCATGCATAAGTGTAAGTAGCTTTATTCTTACCTCAACATTT
TTCATCCATGATTTGGTTGTAAAGCCCTGTGCAAAAAGGGGTTTGCTCTC
GTATGAGCATGCCGTTGAAAGCTGACAAACAGCAGCCATAATTAAAACAC
TTTTCTACCTTTACAGGGTCTCCTAGTCTAAAACTGACCCAACAATTTTC
CCAGTCCACCCGGCCACTAAAATTTTCATAAGTGATTTGTTGTTGTTTGT
TTCCTTCTTCGTTTTTCTGTTTCTGTAATTTGGGCCTGTTGTTAGTGACA
ACGATGAACCGATGACGTAATTAATGTAAATTAGCTTACGCAAGCATTTT
TTTACTTTTCGAAGATTCAATATGGCGGCGGCGCTACCTCCAACTTTGAA
ACAAATAAATTCTTATCTAAAACTGGCAAAAGAATACGACAAGAGGGACC
CGACAGTGGCTTATTTTTGTAAGTACAAAATCTTGAATTATTTTGCTACT
AAAATCAGTGCTTACAGCTGAGGAAAGAGGGGAATTTACCTGTCATAAAG
TGAAAAACATGCTACCGTGGAGATTGGCTGGGTAACTTGCATCAGTTCAG
TCCAGACCCCCGCGCTCGATAGGATCGATCATCGGAACGGCTCNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTCTATCATCGATCTTTTATCGATCTTATC
GACCCTATCGACTCTTTCTAAAAATCGAGCTCTAATATTAATCGATCTTT
CTCGCTATCGATTACCTATTGACACCTATCGATTACCTATCGACACCTAT
CGATTTAAAATCGATGACGAATCGATTTATAATCGATGACGAATCGATTA
ACGATCGATGACGAATCGAGTAACAATCGATGACGAATCGATTAACAATC
GATTAACGATCGATGACGAATCGATTAACAATCGATTAACGATCGATTAA
CAATCGATTAACGATCGATGACGAATCGATTAACGATCGATGACGAATCG
ATATACTCGATTGAAATACTAGCTCGATATTGGATCAACGAAGGATCGAT
ACTCAAGACTTTTTAATGGCTGAATCTTCCATCGATCTCCTATCCGGATC
GATAAGTAATCCATCGATCACATATCGATCCGTCATCGAGCCGTTCCGAT
GATCGATCCTATCGAGCGCGGGGGTCTGGTTCAGTGCATAGCCCTCAAAT
GAATGACTTGTCTGGTCGTTAAAATACAAAGTTAAATCAAAACAAAAATG
GTAGAGTAGAGCTGCAAGCGGAGCTGCGTAGTTGTATTTTAATGACCAGA
AGACAGGTCATTCATTTGAGGGCTATGCCTATAATGCATGTTGTTAGCCT
CCACTGATGCAAGGGCAACAACACTACACTGTCGTCAGTTAATCAAGGAC
CCTCCCAGCGCTCTGTAAACTTCCAGAGTTTTCCGGAGCAGCTAAAAAGA
CACTATTTTTCTCTCCGGAAAGTTCTGGAGCTCTCCCGGAGCAAGTGATT
TTTATCAGTTTCTAAAAAACCGTTTAAGCATCATGGTTACAATAAAAATA
TTTCTCCCCAGGTAGAGAGGTCAGTCAAAATTTCAAACTCATTTTCAAAA
TGCCAAACCAAGTTTAATGAAGGGTCACTCATCTTTTAGCCTTTAGTAGT
TTTTCAGATATTCCATTTTGAAGTTCTATTTTTTTGAAGAATTATGTTCA
AAAACCTCCTGCCATCTTCTTGTAACATTTCCACAGCACTGAAATCGAAA
GTGTTTTACAAAAAAAGTTTGCACAGGAAGTTTGGGGCGAGAGTGTTTTT
CCGTAGGGCGAGCCATAGAGCACAAGTGTTACGCGTAAGCCAAATCGCGT
ATTACGAACAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCAATAAATCAATGAAA
TAATTTGAAATAAAAAGTAAACAAACCTTGAACCTTTCATGAATCCAAAT
AAATAAAAGTATTCATCTAAAGTGAAGATTACATTTCATTTTCAAAATAA
AATGATTTCCAAACCAACCTAAAGTCAGTGTCTGCCAACTAAAAATTTCT
CTGCGGGGTCACTGGCAAGGAGTTACGACTTCAGACTTTAGATTCCAATT
CTTGTATAGGCTGCAACTACACTTCCAAATGATCTGTATTACAAAGACTT
GCAAATGGGTGCATAAGTTAAGAAAATGAGATTATCATGTAGCAAGGGGG
TTTTGTTTTTAAAAACAAACTTCAAAATAAAATTGTTAATGAACTTCTTA
CTTAAAATATCACTTACTTACATAATTCATTTATGATATAACACCCCTTT
CTTAGATAAATGGCCTCTTAAAGTCTTTTATGTTTGCCGCAAGAAGGGAG
AAACATTTAATTTGACCCCCGGTTTTTTCTCTCTTTTTCTAGCTAATTCC
CGCGTGTTAGTGTAGACACAACTTTAATCCGGGGAAATGAAGCGTTTTCA
TTGGTCTAAAATCATGGATGGTCATGTGACCAGAATTTTTATCTAGGGAA
ATGCTGTTGCCGCAATGTTTTGCTTTAGTGAGATTGACCATTTTGTTGTT
TAGATTTGAGCGGGCAAAATTTCTGTACAAACCAAAATATGGCTTCGTTG
GAATACCGGTTGAAACACTTGTGAGAGACGGGGGTCACTATACCATTAAC
TTTCCCTTACAATGGAGCAGATATAGATACAATAAGAATAATTGCACAGT
ATGAAAGAGGAAGTTCTAAGCTCTTTGCTGTTACCTTAGACCACATAAGA
ATTCAACGGAGTACTTGAAAATTTTTGGATTTACTTCTTTGATTCAAATT
TGCTCAAAGACAATGCAGGAACCCAATGATCGCAAGGTTTCATAAGAAAG
CTTGATCTAGCATCTTTCAAGCTCAAAAACCGTTTGTTACGAGACCGATT
TGCTCCATTGTAATCTTAACAAAAGTAACCATGGTTTTTCAAAATTTGAG
TGCCGTGATCTTGTTCACAACAATCAGGGCTACCCTAGCTCTGAAAATCG
AAGATTTCGAATGAACAAAGATCGTTAAAGACTTTTGGTTTTTTGAAATG
CAAAGATGAATAAATTCTTTTCTACTAAGAAGAAAAAAACATGTAGATAT
ATATGTAACTTTATCATTTAGATATTAAATTCTGAATTTCATTTTCATAC
ATTTTTCCTTGCCGTGTCTTTTGTACCACGGGACAGTAAGCGGGAGTGGG
AGTGGAACTCCGGAGCGTTCCGGAGTTCCAGTGCAGACCGCCAATCACCG
AAAATTGTGGTCCAGGATACTGGAAGTACTCCGGAATCTTCCGGTGCTGG
GGAGCACGAAAAAACATTACTTTTTGCTCCGGGTTTTGGTCCTGGTAAGT
GTTAAGTCACACTAGGAAATCAAGCTTTCAGAAAAACAACAAGGATGAGA
GCTACCTGAATAAAGTTCAAGCTCCCAAGACAATTAATTAAAACTGGAAA
TCTTAAAATGAGACAATGACCGATTGCGAACGTGCAGAGCCAGAAATATC
AACCAACCAATTATTATTATATTTCCATTCATTTGACTGAAGCAAAATCT
GTTTCTACAACTCTTGATAGAGTATATTGCTATTGGTATCTTAAATACCG
TCAACTGCTCTAACTTGGGACTGTCTGACAAAACATGGGACGGCAATTCG
GCCAACATTTCACCAAACCTCCAAAGTCATTTGATTTGAGTTAATGAACG
GCGTATTAAAAAATACACAATTTCTCTTTCGCACCAAGTAGGCTTTTAAA
TCTTTTAATGTGAAAAATCCGTAGTGGAACACACGCGAGTGTCTGGAACG
AAGAAGAACAAGTTAGTGGCAAAACGATGGAGCCTTTGACGTCACTCGCG
TGGCAAATTACACACTCGTTATTTGTTATTCCCATCAGGTGATAGGCGGT
TAGACGGCAGGCGTTCTCTAATTCTCCAATCAGCGTCCGGTCATTTTGAA
TGAAAACAAAAAAGTTAAAAAGGGTGCGCTATCAGTGAAAGTTATTGTGA
CATGTTATGACAAAAAGTATGATTGATAAACTTGTGGAGTTATCAAAACA
AATTTGTTGTCAAAAGAGATTTAACAGTAAGTGAAAATACAGGCCAGATA
TCAACAGTCCCATGTTTCGACCAATTGTCCTAAGTTAGAGCAGTTGATGG
TTGAATGTTCTAAAAGTATAGAGCTTGATCTCCCTAGCAGTGCAGTTGGA
ACTTCGATTTTTGAGGATTCGGTTCGTTGAAATGGTGGCTGAATTTCCGT
CCCATGTTTTGTCACATAGTCCCAAGTTAGAGCAGTTGGATTTTGAGCTT
GGATATCCAGGCTACCATGCCTATTGCTATTTTCAGTCAGGACTTCCTTG
GTCTTTCAGGGTCTTTTTGAATATCAGTTCAGATAGAATAAAAACATACC
TGATCAACACAAAAAAACCTTCTGTTTTGCGTTTACTCTTTCCTACACAA
CAACTTTTGCTTTTGCTTATGTAGGTTTTGAAATTCACAAGTAATGAACC
TCTTGTCGTTTTATCTAAATAAATCTTGTTGAAAACCTTCTGTCAAGTTT
CATTCCGTACATTTTTTATCTACATGGTGAACTGGTGTCCCTGAGTTCCC
GATAATTAAAAATTTGGCACTTTTCTGTGGACACGATTGGGGGTACCGCC
ATCGGGAAATATTTTTCATGAAAATTTACCATATTTTAACTGTAATATAA
TCTTCATAGGAAACAAATATCAAATTTGATTCTCTTTTGCTCGTATTTCA
AAATTTCAAGATTAAAAGAACTATTTACAAAAATCATATTCTTTAACAGG
CATCCAATTGCTATTGACATATTTGTGAATCTCCAAGCGATTTTAAGTAC
ATAAAAATCTCCTGGCTTGATACCGCAAAACTATTGGCATCTTACCGGTA
ACACTCTTGTTGAGTCCAGCAATCCATCAATTACAACCGGCAATAAGCCG
GCAGCCAGTTTGCTGGCAGCATTTGTGTAAATTCTATTTTTAGAAAAGGA
TTTGGTTTAAGGAGAGACTTGCTGGCAATCTACCGGCAATGAAGAAAAGT
ATACAGTAATATGAGGACAACAAAGAAAAAGAGCCAGCAATTTGCTGACA
ACAAAGAAAAAGAGTAATTTGCCGGCAACAAAGAAAATTTATTTACAGCT
TTTGCAGGCACTTTTCCCCCTATGTCATCCGGCAATTTGCAGGCTACTGT
TATAACATTGCCGGCTATACCAAACAGATAACTGGCAATTCGCCGGCAAA
AACAAAGCTGGCTAGTTGCCGGCAAGAAGTTCATGTCCTTTGAATTGCTT
GTATGGTCACATTTAATGATGTCATAATCAATGTCAGCGTCGTTTGACAT
CTTTGGTGAAAATGTCAACTCCATTGATGACATCATCGCCACCTGATGAC
ATCATCATTCTTTGAAAATATCAAAATTAGGACCCCCCTCTAACTTTTTT
TCACTCTAATGTTCATTGCTCAAATTTTGTGAGGCAGCTCCACGTGACAT
GCATTTTTGGGGCAGAGGGTCAATCTTTTGCCACTTGTTGCTATCGTGTA
CTTTACAGCCAGCCCTTTTTGCCTAAACAGTCCTAGGCTACTGTATCTAG
TGATTGGCAAATGCTAGGTGTTGATAACACAAGTTTACAGCCAAAACTTC
AGCGAAATCAGACAAGTGGTTATGCTGAAAGTGAGCAATTTAGGTAAAAA
ATGGACCGGTCTGTAAAATACCAACTGCTCACTTGACTAAATTGAAATTT
TGCACACTGTCTTAGATGGTCAATATTTATTACTGGTGAAAAGCTCCATT
CGTTCCTGAGTTCTGGCAGGTGGTCAATGTTTATTTTACAGACCGGTCTG
CAAAGTACCAAATATATTCTGGTAGGAAAAAATTTTTTTAGTTGAAAAAT
TAGCCTTCAGAAACAATTATTTCAGTCAAATTGAACAAGTCAAAAAGTCA
ATACATGATTTTGGTCAAGTTTACATTCTGCACGGTTAAATACCAACCAG
ACAGGTGGCCGAACCGAGATGCTTCCCCTAGTAAAAAAAGAGAAGGTGCT
TGGGATACAGGAATTGCTATCTATCCATGAAAATTGGACATTGCTGTTTT
GTTATCTCAAAGTGCAGGCTTAAGAAGTAGCAACGTGCATTTTAACTTTC
TTCTCCTTATTGGATTCAAGATAGCATACTAGCATACAATACCAGCATGC
AAATCTAGAGTTGTCTGTCAATCGACTGATGAAAGAGTTTCCTCTACAGG
TCAGCAGTTCGTTGATTGAGGGAGGCTTTCTAAAAATTTACATTTTTTTG
AAAAGTGTGTTGTATTTTATAGATAATTAAAGAAATTTAAAAAATTTTAA
CACAATTTAGAAACTAGTTATAAATCTGTTTTTCAGTGGTATGAAAGTTA
ATGGCTAGTGTAAAAGATATTTTAAGTTATCCCTGACAGTTGTGAACAAG
AGTTTAGATATAAGGGAATAAGAACTGTAGGTAAACATTAAAAATGATTC
TTTCTTGTAGGTCGGATGTATGCAGTCCATAAAGGGATCAAGTTGGACAG
TAAGAGTCCAGAAGCAAAGAAATTTCTCTTTGGCATGATGGACAATTTGG
AAAATGTAAGTATTTACAACCGATTCTCTGATAAAAGTTATTTTAAAAGT
ATTCAACATTTGCTTTTTTTCTTTAACCTCAATATAAATCCTACGCAATT
TTCTTTCAAATGTAAAGCTGGATATCCACTGGAAAAATAAGTTCGTCGCG
AATTTGTTTGTCGTACAAAATAAATCCAGGCTTGCAATAGATTTAAAATT
CCAGACATATATCTGTATGATTTATTTTTTGTTTTAAACAGATATTTGCG
ACGAACTTATTTTTTTCAGTGGACACCCAGATTAAAAAATGATAAAAAAT
AATTTCATAAAATGGCTCAAATCTTAAACTGTAACTGTAAGGTTAAAGCA
AAACTTCACAAATCAAATCTCGCAAAAAATCTTATATGTTTGTTTTGTTT
CCCGTTGAAAAATTAACGTANCATGCAATAGATTTAAAATTCCAGACATA
TGTCTGTATGATTTATTTTTTGTTAACAGGTATTTGCAACGAACTTATTT
TTTTCAGTGGACACCCAGATTAAAAAATGATAAAAAATAATTTTATAAAA
TGGCTCAAATCTTAAACTGTACTCAGGTTAAAGCAAAACTTCACAAATCA
AATCTCGCAAAAAATCTTGTATGTTTGTTTTGTTTCCCGTTGAAAAATCG
ACGTTAATTTATTTTTTCTCAAGGTCAAGAAAGAGCTGACAGGACAGGGT
GATGAGAGTGTGACCAATGACATCGTTGGACAAGCTCACCTTGAAAACAT
CACTGTCAATCTATTCACATGGGCAGATGGTGAGGATAGAAAAGCCAATT
TCAACAAGTGAGTTTCCTTTCAAAGCGAAACTAGTGGATGGTGAGAGTAT
CACTTTTTTTTCTTTTTTTTTAATGCATCCTGGACTTAAAAGATTTATTT
TACAATCTTTGGCTAATTTTTGGACCTACCACGGAGGTCCTTTAAATTAA
CCCATGTCTTTTCGTTGTTTCGTTCGTCTGTTACCAGCTTTTCTCGAGAT
TGGCTCATTAGTTTTTTCTGATTTTTGGCACAACGGTGCAAACGACCCAA
ATTGTGACGGAGCCCGATTTTTTTGGACGCAAAATTGCTTCATTAGTTTT
TTCTGATTTTTGGCAAAAAGATTGAGGGCAAGGTTCTCTAAAAAATAGCT
GAAGTCGTTTTTTCTGAAAAGTTGCTTTTCGCCGTAAAAATCTGTTTTTC
TTATTTGGGGAAATTCCCTTCTGTCTCTTTTTGGGGAAAAAAATTCAGGG
CAAATTTGGGTCAAAAAGTGCCCAAAGATCTTGTGAAATAGGCTTCATAA
GTTTGTTTTCGATTTTTTGTATAAAGACAGAGAGCAAGGCTTTCTAAGTC
TGAAGCCGATTTCTCTGGAAAATTTATTTTGACGGTAAAAATCGGATTTT
CTTGTTGGTAAATCCTGTTTTTTGCGATTAGCTTGTTGTTTTTTCTGATT
TTTCGGTTTGCCATTTTTTCTATAAATTATAATGCTCATCTCAAAATGTT
AGTTTTTGACGGCGTAGATTTGAGTAAATCACCATAATGTCTTGGGAAAG
TAGTTTAAAGTATATTATTTTCATTTGTTTTCTAGGAATGTGGTCAAAGC
GTTTTATTCGTCAAGCTTGTTATACGATGTCCTGACACAGTTCAGTGAAC
TTAGCGAAGAGGTACGGTGTATACTCCAGTATAAATATCAAGTCTTGTGT
GCGTTTAGCCTGTACCAAACTCTTTTTTGCTGACTGAAAAGATACACGGC
AAGCTTTTTCAAAATATAAAAAACGCCCGTTACGGGCGGAGTGGTACAGG
CTATTGTGCGTTATATTGCAGTGAAAACTTTCTGAATTTTCAACCGTGTA
TTTTTTTGTTACGGCCACCACGTTCTTAAAACCTGTCTACGTCCAATGGT
TAAGGGAAATCATTTACTGTATCTCCTAACATTTGCTTACATAGTATTTT
CAATCAACAAAAGAAAACATAAACATTTTTCTCTCTTTCGTGCCAAGCGT
ATTACCGAGATTATGTATGCGTTATTTTCTGCGACGGAGACGGTAAGGTT
TCAATTTATCTATATCCTGACTGACTGAGGACGACGGTAAATCAGCACTT
TTACCGTCCTCGATTTCGCGGCTCAGAAATGCGGTTTATTCCGAATCGCT
TCAGTCACTCTACCATCCTCAAAAGAGCAAATACATAAACTCGCTATTGT
TTATTCCTAGAGGGGCGTCTCATTTTCTATCATAATAAGGAATATCTTTA
ATGGCTTTTGAATTATTTAAAAATCAAATTTTAAAAGTTCTTACATAAAA
AGGAACAAAGAAAAAAGTTTTTGACCCTTCAAACTATTTTTGTTTAGTGC
TCTATGCAGCAGAGATATGCCAAATGGAAGGCTACTGAAATTCACAAATG
TCTACAAAGAGGAGAGACCCCTGTTCCTGGACCCGCTGGGTCGGAATTCG
AAGGCACTGAATTTGGTGCCACTACTTCAGGAATCGGAAGCATGCAATTG
AACGATGGCTCCGCAAACACACCTTACCCTCCTGCAAATATGGATCAACC
TGGACCATCGGGATACACGCCGGAGCCGGTCCCTGCCCCTCGAAAGGTAC
ACGTCATTGACTTCCAAGCCCGAAGAGCTAGAATTGAGACTCCTCCAGGA
CGCCTGCGCGTTGTTTTTATAAAAACGCCGGCTTGAAAGTAAAATCCATC
GCTAGATTTAAAAAATGCAGTCCTCAAAAACAAAGGAACCACTAGATACA
ATCCGTCGTCATGATTGCGGCGCGTTCTAGACGCGTTCTTCGATTAGTCT
TTTCATGCCTTGGCTAACAGTTATATTTTGATGTGAAATGAATAGCATGG
TTTGGGCTATGAGTTTGAATAGACCTTATCGGAGTTTTTTATTTTTCTAA
AAAAGCGATGCATTGTGGGATTGTTCCGAGTGTATTACAATAGAAACCTC
TTAGGGGAATTCTATTGTAATACACTCGAAACAATCTCACAATGCATCGC
TTTTTTAGAAAAATCAAAAACTCCGATAAGGTCTATTTCCTAGCTTTTAA
ATGACAGTTGAAAGAATAGCAAATCATATTTTGTTATCCTCCCACTGGTC
ACACTTTCTTAGAAAAAAATGCAAGTTTCCAAACTTGTTTTAATTTTAGT
AAGTGAGGACAGCGTTAAATTTGAATTTCTTACTGTAATTTTTATGCCAA
AATTTGCTTCCCAGGTCGATCCCGTCCTATAAATCAGGTTATAAAAATAA
GGGATGTGTCTCCTGTCTATGGCCGATTTCTTTTTGGACTTACCCCGGTG
GAGGTCCTATAAATTAACCGTTGGATGTTCGTCCGTTCGTTCGTTCGTTC
GTTCGTTCGTTCGTTCGTTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGGCTCATTAGTTTTTTC
TGATTTTTTGCACAAAGATGCATAACTATAAACCCTCGAATGTGACGGAG
CCCGATTTTCGAAAAAAAAAAATTTTCGGGCAAATTTGGGCCAAAAACCG
GCTAAAAAACAGGTTTTTTGGACTTGGCGAAATATTGGATCATTAATTTT
TTCTGATTTTTTGTATGAAAGTAGGGTACCATCATAGGTGAAAAATGGCT
CAAGCAGATTTTTGTAAAAAATGAATTTTTCAGCTCAAAAAACGCATCTT
TATCTATAAGAATCACTATTAATAAGCATACATCAATGTTCTTAGCCAAA
TTACTCAATATTTTGATGAGATCGATGTTTTTTTTGCTCACGAAGTCTTG
AATATAAAAGAATATTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGATCATTTTCATCATTATTC
ATGATGTTTTGGACATGATTTATGAGAAGTTTGATGCATACTGGCTCTCT
AACAATGTGGAAAGACTTTGGAGAAATTTTGGCCGTGAATCGTCAGCTGA
TCGAATCGAGTGCTTAAATCTTGCATATGGCTATGGNGAATGATTGTTTA
ATGGTCACGCTCACGTAGATATCAATTATATATGTGTTAAATGCATAACC
AGGTAGGTCCATAAAAGTATCACTTGTAAAAACTTGACACTCTTTGGAAT
GAAAAAAGGAAATTAACTAATTTTTAAGCTAGACTGTATTTAAATTGATT
AATCTTTTGTAATTTTTGTTTTCTTTTTAGCCTTCAAACCAAGCACCGCC
ACCATCATCAGGATATGTTGCGCCGGCACAGGCTAGTGTAGAGAATTCAC
ATGTAGACTTTCAAGAATGTTCTAAACTATGTAAATATGCAATGAGTGCT
CTTGATTACGAAGATGTAGACACAGCTGTTGCCAACCTCACCAAAGCTCT
AAACATGTTACAAAATAGATGATAATATACTATACTTACTATGAATGATA
ATAGCAAAAGTGTAATACCGATGGGCAGAAGAATTTGGAACCGCCATTTT
TATTTGACTCAATTTTGAATTCGGTAACATCTTTTTACGGATAATATTGT
TGAATTACTTCTTCTTTGTTTGAATCTTTTGATTTTATTGTCAAAATTAG
AACGCTTCATTAAGAAGGGGGTATTATTAGAGAGGTTAATTTTGTTCCAA
TCATAACACAAGCAAAGTCCTCCTTTTAATAAATTACGTTTCGAACATCA
CTTGCTTCGTTTTGAAATTATTGCCATGGTGATTATCTCCCAGCGGATTT
TATTAAAACTACTTTCTATCCATAAAAAAATTATTTAATGCCTCAAGAGA
CATAATCACCATGGTAATTGTTTGCATACAAGGCAAGTGATGTTCGTGAC
GTAATTTATGAAAAGGTCAATTCAAAGATTGTTATTTCTTCGAAGATGTA
ACTGTAATCGAAAAATGACCCGAGGCTAAATTTTTTTGAGTAAATCGTTG
TATTTCATTTCATTTCACCAAACTTATTTCAATGTATCTATTTCGGGCAG
TTTAACATCAATAAGATATTATTATGGTTCCTACACTTCAATTTTAAAAC
ACAACTCTTCTCGTATTTAAAAGGTTAAGTCCCAAAATAAATTTGTAAAT
AGTAATTTTTGTAATTCATCTTTACTCGAAATAAACCTATACGAAAGAGA
AATTTAATCCGTCAAAGTTCT

Coding sequence (CDS) from alignment at sc0000047:59580..73150-

>TCONS_00004657 ID=TCONS_00004657|Name=TCONS_00004657|organism=Clytia hemisphaerica|type=CDS|length=5058bp|location=Sequence derived from alignment at sc0000047:59580..73150- (Clytia hemisphaerica)
CCTTCAAACCAAGCACCGCCACCATCATCAGGATATGTTGCGCCGGCACA
GGCTAGTGTAGAGAATTCACATGTAGACTTTCAAGAATGTTCTAAACTAT
GTAAATATGCAATGAGTGCTCTTGATTACGAAGATGTAGACACAGCTGTT
GCCAACCTCACCAAAGCTCTAAACATGTTACAAAATAGATGATGCTCTAT
GCAGCAGAGATATGCCAAATGGAAGGCTACTGAAATTCACAAATGTCTAC
AAAGAGGAGAGACCCCTGTTCCTGGACCCGCTGGGTCGGAATTCGAAGGC
ACTGAATTTGGTGCCACTACTTCAGGAATCGGAAGCATGCAATTGAACGA
TGGCTCCGCAAACACACCTTACCCTCCTGCAAATATGGATCAACCTGGAC
CATCGGGATACACGCCGGAGCCGGTCCCTGCCCCTCGAAAGGAATGTGGT
CAAAGCGTTTTATTCGTCAAGCTTGTTATACGATGTCCTGACACAGTTCA
GTGAACTTAGCGAAGAGGTCAAGAAAGAGCTGACAGGACAGGGTGATGAG
AGTGTGACCAATGACATCGTTGGACAAGCTCACCTTGAAAACATCACTGT
CAATCTATTCACATGGGCAGATGGTGAGGATAGAAAAGCCAATTTCAACA
AGTCGGATGTATGCAGTCCATAAAGGGATCAAGTTGGACAGTAAGAGTCC
AGAAGCAAAGAAATTTCTCTTTGGCATGATGGACAATTTGGAAAATATGG
CGGCGGCGCTACCTCCAACTTTGAAACAAATAAATTCTTATCTAAAACTG
GCAAAAGAATACGACAAGAGGGACCCGACAGTGGCTTATTTTTCCTTCAA
ACCAAGCACCGCCACCATCATCAGGATATGTTGCGCCGGCACAGGCTAGT
GTAGAGAATTCACATGTAGACTTTCAAGAATGTTCTAAACTATGTAAATA
TGCAATGAGTGCTCTTGATTACGAAGATGTAGACACAGCTGTTGCCAACC
TCACCAAAGCTCTAAACATGTTACAAAATAGATGATGCTCTATGCAGCAG
AGATATGCCAAATGGAAGGCTACTGAAATTCACAAATGTCTACAAAGAGG
AGAGACCCCTGTTCCTGGACCCGCTGGGTCGGAATTCGAAGGCACTGAAT
TTGGTGCCACTACTTCAGGAATCGGAAGCATGCAATTGAACGATGGCTCC
GCAAACACACCTTACCCTCCTGCAAATATGGATCAACCTGGACCATCGGG
ATACACGCCGGAGCCGGTCCCTGCCCCTCGAAAGGAATGTGGTCAAAGCG
TTTTATTCGTCAAGCTTGTTATACGATGTCCTGACACAGTTCAGTGAACT
TAGCGAAGAGGTCAAGAAAGAGCTGACAGGACAGGGTGATGAGAGTGTGA
CCAATGACATCGTTGGACAAGCTCACCTTGAAAACATCACTGTCAATCTA
TTCACATGGGCAGATGGTGAGGATAGAAAAGCCAATTTCAACAAGTCGGA
TGTATGCAGTCCATAAAGGGATCAAGTTGGACAGTAAGAGTCCAGAAGCA
AAGAAATTTCTCTTTGGCATGATGGACAATTTGGAAAATATGGCGGCGGC
GCTACCTCCAACTTTGAAACAAATAAATTCTTATCTAAAACTGGCAAAAG
AATACGACAAGAGGGACCCGACAGTGGCTTATTTTTCCTTCAAACCAAGC
ACCGCCACCATCATCAGGATATGTTGCGCCGGCACAGGCTAGTGTAGAGA
ATTCACATGTAGACTTTCAAGAATGTTCTAAACTATGTAAATATGCAATG
AGTGCTCTTGATTACGAAGATGTAGACACAGCTGTTGCCAACCTCACCAA
AGCTCTAAACATGTTACAAAATAGATGATGCTCTATGCAGCAGAGATATG
CCAAATGGAAGGCTACTGAAATTCACAAATGTCTACAAAGAGGAGAGACC
CCTGTTCCTGGACCCGCTGGGTCGGAATTCGAAGGCACTGAATTTGGTGC
CACTACTTCAGGAATCGGAAGCATGCAATTGAACGATGGCTCCGCAAACA
CACCTTACCCTCCTGCAAATATGGATCAACCTGGACCATCGGGATACACG
CCGGAGCCGGTCCCTGCCCCTCGAAAGGAATGTGGTCAAAGCGTTTTATT
CGTCAAGCTTGTTATACGATGTCCTGACACAGTTCAGTGAACTTAGCGAA
GAGGTCAAGAAAGAGCTGACAGGACAGGGTGATGAGAGTGTGACCAATGA
CATCGTTGGACAAGCTCACCTTGAAAACATCACTGTCAATCTATTCACAT
GGGCAGATGGTGAGGATAGAAAAGCCAATTTCAACAAGTCGGATGTATGC
AGTCCATAAAGGGATCAAGTTGGACAGTAAGAGTCCAGAAGCAAAGAAAT
TTCTCTTTGGCATGATGGACAATTTGGAAAATATGGCGGCGGCGCTACCT
CCAACTTTGAAACAAATAAATTCTTATCTAAAACTGGCAAAAGAATACGA
CAAGAGGGACCCGACAGTGGCTTATTTTTCCTTCAAACCAAGCACCGCCA
CCATCATCAGGATATGTTGCGCCGGCACAGGCTAGTGTAGAGAATTCACA
TGTAGACTTTCAAGAATGTTCTAAACTATGTAAATATGCAATGAGTGCTC
TTGATTACGAAGATGTAGACACAGCTGTTGCCAACCTCACCAAAGCTCTA
AACATGTTACAAAATAGATGATGCTCTATGCAGCAGAGATATGCCAAATG
GAAGGCTACTGAAATTCACAAATGTCTACAAAGAGGAGAGACCCCTGTTC
CTGGACCCGCTGGGTCGGAATTCGAAGGCACTGAATTTGGTGCCACTACT
TCAGGAATCGGAAGCATGCAATTGAACGATGGCTCCGCAAACACACCTTA
CCCTCCTGCAAATATGGATCAACCTGGACCATCGGGATACACGCCGGAGC
CGGTCCCTGCCCCTCGAAAGGAATGTGGTCAAAGCGTTTTATTCGTCAAG
CTTGTTATACGATGTCCTGACACAGTTCAGTGAACTTAGCGAAGAGGTCA
AGAAAGAGCTGACAGGACAGGGTGATGAGAGTGTGACCAATGACATCGTT
GGACAAGCTCACCTTGAAAACATCACTGTCAATCTATTCACATGGGCAGA
TGGTGAGGATAGAAAAGCCAATTTCAACAAGTCGGATGTATGCAGTCCAT
AAAGGGATCAAGTTGGACAGTAAGAGTCCAGAAGCAAAGAAATTTCTCTT
TGGCATGATGGACAATTTGGAAAATATGGCGGCGGCGCTACCTCCAACTT
TGAAACAAATAAATTCTTATCTAAAACTGGCAAAAGAATACGACAAGAGG
GACCCGACAGTGGCTTATTTTTCCTTCAAACCAAGCACCGCCACCATCAT
CAGGATATGTTGCGCCGGCACAGGCTAGTGTAGAGAATTCACATGTAGAC
TTTCAAGAATGTTCTAAACTATGTAAATATGCAATGAGTGCTCTTGATTA
CGAAGATGTAGACACAGCTGTTGCCAACCTCACCAAAGCTCTAAACATGT
TACAAAATAGATGATGCTCTATGCAGCAGAGATATGCCAAATGGAAGGCT
ACTGAAATTCACAAATGTCTACAAAGAGGAGAGACCCCTGTTCCTGGACC
CGCTGGGTCGGAATTCGAAGGCACTGAATTTGGTGCCACTACTTCAGGAA
TCGGAAGCATGCAATTGAACGATGGCTCCGCAAACACACCTTACCCTCCT
GCAAATATGGATCAACCTGGACCATCGGGATACACGCCGGAGCCGGTCCC
TGCCCCTCGAAAGGAATGTGGTCAAAGCGTTTTATTCGTCAAGCTTGTTA
TACGATGTCCTGACACAGTTCAGTGAACTTAGCGAAGAGGTCAAGAAAGA
GCTGACAGGACAGGGTGATGAGAGTGTGACCAATGACATCGTTGGACAAG
CTCACCTTGAAAACATCACTGTCAATCTATTCACATGGGCAGATGGTGAG
GATAGAAAAGCCAATTTCAACAAGTCGGATGTATGCAGTCCATAAAGGGA
TCAAGTTGGACAGTAAGAGTCCAGAAGCAAAGAAATTTCTCTTTGGCATG
ATGGACAATTTGGAAAATATGGCGGCGGCGCTACCTCCAACTTTGAAACA
AATAAATTCTTATCTAAAACTGGCAAAAGAATACGACAAGAGGGACCCGA
CAGTGGCTTATTTTTCCTTCAAACCAAGCACCGCCACCATCATCAGGATA
TGTTGCGCCGGCACAGGCTAGTGTAGAGAATTCACATGTAGACTTTCAAG
AATGTTCTAAACTATGTAAATATGCAATGAGTGCTCTTGATTACGAAGAT
GTAGACACAGCTGTTGCCAACCTCACCAAAGCTCTAAACATGTTACAAAA
TAGATGATGCTCTATGCAGCAGAGATATGCCAAATGGAAGGCTACTGAAA
TTCACAAATGTCTACAAAGAGGAGAGACCCCTGTTCCTGGACCCGCTGGG
TCGGAATTCGAAGGCACTGAATTTGGTGCCACTACTTCAGGAATCGGAAG
CATGCAATTGAACGATGGCTCCGCAAACACACCTTACCCTCCTGCAAATA
TGGATCAACCTGGACCATCGGGATACACGCCGGAGCCGGTCCCTGCCCCT
CGAAAGGAATGTGGTCAAAGCGTTTTATTCGTCAAGCTTGTTATACGATG
TCCTGACACAGTTCAGTGAACTTAGCGAAGAGGTCAAGAAAGAGCTGACA
GGACAGGGTGATGAGAGTGTGACCAATGACATCGTTGGACAAGCTCACCT
TGAAAACATCACTGTCAATCTATTCACATGGGCAGATGGTGAGGATAGAA
AAGCCAATTTCAACAAGTCGGATGTATGCAGTCCATAAAGGGATCAAGTT
GGACAGTAAGAGTCCAGAAGCAAAGAAATTTCTCTTTGGCATGATGGACA
ATTTGGAAAATATGGCGGCGGCGCTACCTCCAACTTTGAAACAAATAAAT
TCTTATCTAAAACTGGCAAAAGAATACGACAAGAGGGACCCGACAGTGGC
TTATTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002627XLOC_002627Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004657-proteinTCONS_00004657-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004657-exon-sc0000047-1575043694:73031..73150TCONS_00004657-exon-sc0000047-1575043694:73031..73150Clytia hemisphaericaexon
TCONS_00004657-exon-sc0000047-1575043694:72583..72686TCONS_00004657-exon-sc0000047-1575043694:72583..72686Clytia hemisphaericaexon
TCONS_00004657-exon-sc0000047-1575043694:66046..66140TCONS_00004657-exon-sc0000047-1575043694:66046..66140Clytia hemisphaericaexon
TCONS_00004657-exon-sc0000047-1575043694:65244..65377TCONS_00004657-exon-sc0000047-1575043694:65244..65377Clytia hemisphaericaexon
TCONS_00004657-exon-sc0000047-1575043694:64390..64465TCONS_00004657-exon-sc0000047-1575043694:64390..64465Clytia hemisphaericaexon
TCONS_00004657-exon-sc0000047-1575043694:63455..63703TCONS_00004657-exon-sc0000047-1575043694:63455..63703Clytia hemisphaericaexon
TCONS_00004657-exon-sc0000047-1575043694:59580..60520TCONS_00004657-exon-sc0000047-1575043694:59580..60520Clytia hemisphaericaexon
TCONS_00004657-exon-sc0000047-1510915933:73031..73150TCONS_00004657-exon-sc0000047-1510915933:73031..73150Clytia hemisphaericaexon
TCONS_00004657-exon-sc0000047-1510915933:72583..72686TCONS_00004657-exon-sc0000047-1510915933:72583..72686Clytia hemisphaericaexon
TCONS_00004657-exon-sc0000047-1510915933:66046..66140TCONS_00004657-exon-sc0000047-1510915933:66046..66140Clytia hemisphaericaexon
TCONS_00004657-exon-sc0000047-1510915933:65244..65377TCONS_00004657-exon-sc0000047-1510915933:65244..65377Clytia hemisphaericaexon
TCONS_00004657-exon-sc0000047-1510915933:64390..64465TCONS_00004657-exon-sc0000047-1510915933:64390..64465Clytia hemisphaericaexon
TCONS_00004657-exon-sc0000047-1510915933:63455..63703TCONS_00004657-exon-sc0000047-1510915933:63455..63703Clytia hemisphaericaexon
TCONS_00004657-exon-sc0000047-1510915933:59580..60520TCONS_00004657-exon-sc0000047-1510915933:59580..60520Clytia hemisphaericaexon
TCONS_00004657-exon-sc0000047-1491911889:73031..73150TCONS_00004657-exon-sc0000047-1491911889:73031..73150Clytia hemisphaericaexon
TCONS_00004657-exon-sc0000047-1491911889:72583..72686TCONS_00004657-exon-sc0000047-1491911889:72583..72686Clytia hemisphaericaexon
TCONS_00004657-exon-sc0000047-1491911889:66046..66140TCONS_00004657-exon-sc0000047-1491911889:66046..66140Clytia hemisphaericaexon
TCONS_00004657-exon-sc0000047-1491911889:65244..65377TCONS_00004657-exon-sc0000047-1491911889:65244..65377Clytia hemisphaericaexon
TCONS_00004657-exon-sc0000047-1491911889:64390..64465TCONS_00004657-exon-sc0000047-1491911889:64390..64465Clytia hemisphaericaexon
TCONS_00004657-exon-sc0000047-1491911889:63455..63703TCONS_00004657-exon-sc0000047-1491911889:63455..63703Clytia hemisphaericaexon
TCONS_00004657-exon-sc0000047-1491911889:59580..60520TCONS_00004657-exon-sc0000047-1491911889:59580..60520Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000047supercontigsc0000047:59580..73150 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
31.8617	31.7292	40.0933	42.3166	42.7641	33.1212	42.9711	40.3358	38.0392	48.2528	40.9953	29.9639	29.8412	35.3295	12.8514	15.7255	19.0472	17.7636	12.3387	15.0073	13.162	14.6694	20.6582	18.834	54.7399	58.0319	22.7035	20.6656	17.4093	18.8638
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023175VPS_Vta1/CALS_N-dom
Blast
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BLAST of TCONS_00004657 vs. Swiss-Prot (Human)
Match: VTA1 (Vacuolar protein sorting-associated protein VTA1 homolog OS=Homo sapiens GN=VTA1 PE=1 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.625e-69
Identity = 129/292 (44.18%), Postives = 174/292 (59.59%), Query Frame = 2 
Query:  152 LKQINSYLKLAKEYDKRDPTVAYFCRMYAVHKGIKLDSKSPEAKKFLFGMMDNLENVKKELTGQGD-ESVTNDIVGQAHLENITVNLFTWADGEDRKANFNKNVVKAFYSSSLLYDVLTQFSELSEECSMQQRYAKWKATEIHKCLQRGETPVPGPAGSEFEGTEFGATTSGIGSM--QLNDGSANTPYPPANMD-------QPGPSGYTPEPVPAPRKPSN-------QAPPPSSGYVAPA------QASVENSHVDFQECSKLCKYAMSALDYEDVDTAVANLTKALNML 958
             K I  +L+ A+E+DKRDP VAY+CR+YA+  G+K+DSK+PE +KFL  +MD LE +KK+L   GD E++T +IVG AHLEN  + +F +AD EDR   F+KN++K+FY++SLL DV+T F EL++E    ++YA+WKAT IH CL+ GETP  GP G E +        +G  S+  Q    S+++ Y P+NM        Q  P  + P   PA    S        Q  P +   + PA      Q  V  +  DF    K CKYA SAL YEDV TAV NL KAL +L
Sbjct:   14 FKSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDSKTPECRKFLSKLMDQLEALKKQL---GDNEAITQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVITVFGELTDENVKHRKYARWKATYIHNCLKNGETPQAGPVGIEEDNDIEENEDAGAASLPTQPTQPSSSSTYDPSNMPSGNYTGIQIPPGAHAPANTPAEVPHSTGVASNTIQPTPQTIPAIDPALFNTISQGDVRLTPEDFARAQKYCKYAGSALQYEDVSTAVQNLQKALKLL 302
The following BLAST results are available for this feature:
BLAST of TCONS_00004657 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VTA12.625e-6944.18Vacuolar protein sorting-associated protein VTA1 h... [more]
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