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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004653 ID=TCONS_00004653|Name=TCONS_00004653|organism=Clytia hemisphaerica|type=transcript|length=690bp
ATCATTACAGTGAATCAATCCAAAATCCATGGGAATATCCAAACGACAAT
GACTGTGATGAAATTCCCAATTCCGCATTCAAACTTTTCTCAAAAGCTGG
TTATTCAACAATGTTTAACGAAGATTCTGCTACGGGTGGTTTATTCCAAT
TTCGAATGAACGGTTTCAAAAAGGCACCCACCGATTGGTATCCCCGCCCT
TATTGGATAGCCGCCCATGAGCGTAATGATGGGTGTGGTCGGCAACCATG
TGTTTGCGAAACGCAACAAATGATACGAATGATTTTGCATTATACTGAGA
CGTGTGAGGACTCGTTGAAATTCTCAGTGAACTTGTTGTCACAAGCTCAT
GACGAAATGAATAATCTACACATGGTGGAGAACGAGATTATTGATTTGGT
CAAATTCTTTACTGAAAACGAAAGACGTTGCCAAAACACAATACTCTTCC
TGTTTTCCGACCACGGACCACGCGCCGGGGCCAAATACGAATTTCGAAAC
ACACAACAAGGGCGAATCGAAGAGTTCATGCCTTTTTATTCCATCTTATT
ACCTCCtgaattcaaaacaaaacacaagGAATTGTACCTAAACATGAAGT
CAAACACGGGGGTACTAACATCCCATTTCGATGTATATTCAACATTAAAG
CATATAATAAGTTACCCGAAGTTACCAGAGAAGCATAAAT Run BLAST on NCBI protein sequence of TCONS_00004653-protein >TCONS_00004653-protein ID=TCONS_00004653-protein|Name=TCONS_00004653-protein|organism=Clytia hemisphaerica|type=polypeptide|length=229bp
HYSESIQNPWEYPNDNDCDEIPNSAFKLFSKAGYSTMFNEDSATGGLFQF
RMNGFKKAPTDWYPRPYWIAAHERNDGCGRQPCVCETQQMIRMILHYTET
CEDSLKFSVNLLSQAHDEMNNLHMVENEIIDLVKFFTENERRCQNTILFL
FSDHGPRAGAKYEFRNTQQGRIEEFMPFYSILLPPEFKTKHKELYLNMKS
NTGVLTSHFDVYSTLKHIISYPKLPEKHK Run BLAST on NCBI transcript from alignment at sc0000047:770385..771543+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004653 ID=TCONS_00004653|Name=TCONS_00004653|organism=Clytia hemisphaerica|type=transcript|length=1159bp|location=Sequence derived from alignment at sc0000047:770385..771543+ (Clytia hemisphaerica)
ATCATTACAGTGAATCAATCCAAAATCCATGGGAATATCCAAACGACAAT
GACTGTGATGAAATTCCCAATTCCGCATTCAAACTTTTCTCAAAAGCTGG
TTATTCAACAATGTTTAACGAAGATTCTGCTACGGGTGGTTTATTCCAAT
TTCGAATGAACGGTTTCAAAAAGGCACCCACCGATTGGTATCCCCGCCCT
TATTGGATAGCCGCCCATGAGCGTAATGATGGGTGTGGTCGGCAACCATG
TGTTTGCGAAACGCAACAAATGATACGAATGATTTTGCATTATACTGAGA
CGTGTGAGGACTCGTTGAAATTCTCAGTGAACTTGTTGTCACAAGCTCAT
GACGAAATGAATAATCTACACATGGTGGAGAACGAGATTATTGGTTAGTA
TTGATTATTGATTAATATTGATTATTCATTGATCCTTGAAACTATGATTA
TATTCATCAGCCttatctccttttctatttaCGCTAGAGCTGGGAGGTCG
AATGCtaaggtggagcgccacacctactctgcTCCAGAGAACTTACCGCC
TAAATCAGATTACCCAGTCTAGGCCGCTTattcgctgagttggcggtgac
cggggatcgagcCCACAATCCTTGGATTATAAGGCGAGTGCTCTACCGAC
TAAGCTACCCGGCCAGTTTGAAACTAGAGTGATTGAATTATGAAATAATA
CTCAATCAGTATAGATCTAGTTGTGTATCCCTGATTTTTATTGGAGATGG
CCAATTTTGATCATCAGTCGTAACTTATGCTCACAATCGCATCGTCATAC
AATAGTGAATCCTTCCAATATCCAATCTGATCCaatagtgaaatcttttt
atttaaccTTAGATTTGGTCAAATTCTTTACTGAAAACGAAAGACGTTGC
CAAAACACAATACTCTTCCTGTTTTCCGACCACGGACCACGCGCCGGGGC
CAAATACGAATTTCGAAACACACAACAAGGGCGAATCGAAGAGTTCATGC
CTTTTTATTCCATCTTATTACCTCCtgaattcaaaacaaaacacaagGAA
TTGTACCTAAACATGAAGTCAAACACGGGGGTACTAACATCCCATTTCGA
TGTATATTCAACATTAAAGCATATAATAAGTTACCCGAAGTTACCAGAGA
AGCATAAAT Coding sequence (CDS) from alignment at sc0000047:770385..771543+ >TCONS_00004653 ID=TCONS_00004653|Name=TCONS_00004653|organism=Clytia hemisphaerica|type=CDS|length=1374bp|location=Sequence derived from alignment at sc0000047:770385..771543+ (Clytia hemisphaerica)
CATTACAGTGAATCAATCCAAAATCCATGGGAATATCCAAACGACAATGA
CTGTGATGAAATTCCCAATTCCGCATTCAAACTTTTCTCAAAAGCTGGTT
ATTCAACAATGTTTAACGAAGATTCTGCTACGGGTGGTTTATTCCAATTT
CGAATGAACGGTTTCAAAAAGGCACCCACCGATTGGTATCCCCGCCCTTA
TTGGATAGCCGCCCATGAGCGTAATGATGGGTGTGGTCGGCAACCATGTG
TTTGCGAAACGCAACAAATGATACGAATGATTTTGCATTATACTGAGACG
TGTGAGGACTCGTTGAAATTCTCAGTGAACTTGTTGTCACAAGCTCATGA
CGAAATGAATAATCTACACATGGTGGAGAACGAGATTATTGATTTGGTCA
AATTCTTTACTGAAAACGAAAGACGTTGCCAAAACACAATACTCTTCCTG
TTTTCCGACCACGGACCACGCGCCGGGGCCAAATACGAATTTCGAAACAC
ACAACAAGGGCGAATCGAAGAGTTCATGCCTTTTTATTCCATCTTATTAC
CTCCtgaattcaaaacaaaacacaagGAATTGTACCTAAACATGAAGTCA
AACACGGGGGTACTAACATCCCATTTCGATGTATATTCAACATTAAAGCA
TATAATAAGTTACCCGAAGTTACCAGAGAAGCATAAACATTACAGTGAAT
CAATCCAAAATCCATGGGAATATCCAAACGACAATGACTGTGATGAAATT
CCCAATTCCGCATTCAAACTTTTCTCAAAAGCTGGTTATTCAACAATGTT
TAACGAAGATTCTGCTACGGGTGGTTTATTCCAATTTCGAATGAACGGTT
TCAAAAAGGCACCCACCGATTGGTATCCCCGCCCTTATTGGATAGCCGCC
CATGAGCGTAATGATGGGTGTGGTCGGCAACCATGTGTTTGCGAAACGCA
ACAAATGATACGAATGATTTTGCATTATACTGAGACGTGTGAGGACTCGT
TGAAATTCTCAGTGAACTTGTTGTCACAAGCTCATGACGAAATGAATAAT
CTACACATGGTGGAGAACGAGATTATTGATTTGGTCAAATTCTTTACTGA
AAACGAAAGACGTTGCCAAAACACAATACTCTTCCTGTTTTCCGACCACG
GACCACGCGCCGGGGCCAAATACGAATTTCGAAACACACAACAAGGGCGA
ATCGAAGAGTTCATGCCTTTTTATTCCATCTTATTACCTCCtgaattcaa
aacaaaacacaagGAATTGTACCTAAACATGAAGTCAAACACGGGGGTAC
TAACATCCCATTTCGATGTATATTCAACATTAAAGCATATAATAAGTTAC
CCGAAGTTACCAGAGAAGCATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004653-exon-sc0000047-1491911889:770385..770777 | TCONS_00004653-exon-sc0000047-1491911889:770385..770777 | Clytia hemisphaerica | exon |
| TCONS_00004653-exon-sc0000047-1510915933:770385..770777 | TCONS_00004653-exon-sc0000047-1510915933:770385..770777 | Clytia hemisphaerica | exon |
| TCONS_00004653-exon-sc0000047-1575043694:770385..770777 | TCONS_00004653-exon-sc0000047-1575043694:770385..770777 | Clytia hemisphaerica | exon |
| TCONS_00004653-exon-sc0000047-1491911889:771247..771543 | TCONS_00004653-exon-sc0000047-1491911889:771247..771543 | Clytia hemisphaerica | exon |
| TCONS_00004653-exon-sc0000047-1510915933:771247..771543 | TCONS_00004653-exon-sc0000047-1510915933:771247..771543 | Clytia hemisphaerica | exon |
| TCONS_00004653-exon-sc0000047-1575043694:771247..771543 | TCONS_00004653-exon-sc0000047-1575043694:771247..771543 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000047 | supercontig | sc0000047:770385..771543 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003824 | catalytic activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0008152 | metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008152 |
metabolic process |
| molecular_function |
GO:0003824 |
catalytic activity |
Blast
The following BLAST results are available for this feature:
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