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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004649 ID=TCONS_00004649|Name=TCONS_00004649|organism=Clytia hemisphaerica|type=transcript|length=458bp
gaaaacttaaGATGGTAGCAAAAGCTATGGTAGTGGGAAGGTaaaatttt
cagtaaaatctGCATCCTCTTTTCTCTTTAAAGATATCTTtagataaaag
aaataaaagaagtttttttgaatttgactgAAGCATCTTAAATATCAAGT
CATGGGATTGTTTGGAAAAACACCGAAAAAGGACCCAAAAGAACAGGTCA
GAGAATGGTCTTCTGGTCTAAGAAAAGAAGGAAGAAAACTTGATAGACAA
ATTAGAACTATCAAAATGGAGGAAGCAAAAGTTCAAAGATCTATCAAGGA
TGCTGCCAAGAAGGGGCAAAAGGATGTGTGTACCATATTAGCCAAGGAAA
TTATCCAGTCCAGGAAAGCTGTCAACAAACTTTACTCAGCCAAAGCTCAA
TTGAATTCTGTTGATATGCAAATGAAAAATCAATTAGaaattaaatattt
atatttat Run BLAST on NCBI protein sequence of TCONS_00004649-protein >TCONS_00004649-protein ID=TCONS_00004649-protein|Name=TCONS_00004649-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
MGLFGKTPKKDPKEQVREWSSGLRKEGRKLDRQIRTIKMEEAKVQRSIKD
AAKKGQKDVCTILAKEIIQSRKAVNKLYSAKAQLNSVDMQMKNQLEIKYL
YL Run BLAST on NCBI transcript from alignment at sc0000047:735422..741998+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004649 ID=TCONS_00004649|Name=TCONS_00004649|organism=Clytia hemisphaerica|type=transcript|length=6577bp|location=Sequence derived from alignment at sc0000047:735422..741998+ (Clytia hemisphaerica)
gaaaacttaaGATGGTAGCAAAAGCTATGGTAGTGGGAAGGTaaaatttt
cagtaaaatctGCATCCTCTTTTCTCTTTAAAGATATCTTtagataaaag
aaataaaagaagtttttttgaatttgactgAAGCATCTTAAATATCAAGT
CATGGGATTGTTTGGAAAAACACCGAAAAAGGACCCAAAAGAACAGGTAT
ATTTATTTAttgtactttttttttattatttattataccTTTATTTAGCT
ATATGTTTAGTTTCAGGCGACCAAGGGAAAGGATCAGCTGACAGGAGGTC
AGTAATTTGAAAAAGGCGAGTCTGTATTGTAGACAACTTTAACCTGAACC
AGACCTGAACCCTGACCCTGAAACCTGTGACCTGGACGACCTGCGTTTCG
TACTAGTCGCTTTTGGTCCAAAATTGTAGCCTTTGCCTTGCTTGTCCGGG
GTGAACAGCTTCGAAAAATCCATGTGTTTCCATTTCAAGAAATCATGCTc
aaatgcattaatttttctcatcattcttttgatagaccttttttcaaaga
ggacgtcctgccATTGGCCAGTCAGGGACAGTCGCCTTAGGCaggcgatg
ggaatttgatgttctgtttaccgtcgaCCGCCCGCATGCTCTTGAACTgc
cgctcaaaaaagttcattatttcttaaaaactcattattttcttcttttc
ctgtgccaagctatccaaaacactcaaagtgaatcaaaaataacatcttc
GCTAACAAAATGTGCGCCTCGAGTAAAAAACATGGTTCCAAACACGTCCG
CGAATGGGGAAGGCATTTTTTTAAGCAGAGGGCGACATCATGGGCGTTTT
CTCGAACGCGTTTGAATTTTTGCGCATGTAATTTTGATTCCGAAAGTGAA
AGCAGCTCGATTTAACGGTGGAATTCAACTTCGTTGGAGATTGTAAGCAC
CAGgtaggaataatgaataatgaataatgaaattttgccgcatcaaatat
tttttgaaacgcgacggtaaacagaacatcaaattcccatcgcctTNNNN
NNNNNNNNNNNNNNNNNNNNNNNttaggagacgcctcctgattaggagac
gcctcctgattaggagacgcctcctgattaggagacgtctcctgattagg
agacatgtaggtcgcttggggtcgcttgattaggagacccgtctcctaat
taggagacataaaattttgatctcaattttaagaactttaggcttttccg
cgcattttgaaactagttttaatggaaagagcagcctcaaatttagcctg
ggaatccaagctcataattttagaaaaaacaaaaaatacctcacctcaca
aagttctaaaattatagagcttggtgcaggtagattagtctgacacagaa
tgttataaacagtctgtgtgtgaacccttgttgacagagtttctgaactt
tggaaacccaggcagacacacataattaacttaccataaaactccTCTAC
AATCTATAAAGACTTTCAAAGCTActaaaaaccaaataaaaacatcagcc
acatgtatttagacttccagccaacagccattttgttttgaaatgaatct
atgtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNccctgcaggcgagttacctgcg
ccaagcgttaaaccagcagcaaaaatatcataaactagactgtgaaaaaa
agtttaacgcttggattcccaggctacctcaaattggtaaagttttaaaa
aaattatcaaaatttctcggtgcaatcgatcacaatcctaatataaaata
aagcactacaaggaagcccctcttgatttttttcatgtccgccatttttc
tttttgagacgcttttgttcagaagacagattcttacttctgattggttc
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNcaggaggcgtctcctaataaggcgactgtcccTGACTGT
TGGCGGCAAGCtaaaatatgttccattcgCGTCATGAAACATCTTCAATT
GGTCGGttggtcggtagtaaattttgtcgggtTTTTAAAATCTAGTAAAT
CCCGAAGAATCAAGTAGTagtcggcaatcaacaaaattttttgccgccat
cttctGCCAAATTAACgggccgtcgacaaacgattttccttttttttaac
ggcttctggccgtaaggggtgggagggggtcactgcaataccgttaaaaa
aaaagtaaaaaaaaagggaaagtctcacttacaaatttcatccgtccaaa
aagtagaaacatgtGAAGAAAGGCTAAGACCAAAGCAACCACACGACATT
CACCTTATTCCCGATCACCAATTAATGCTTCGACGAAAAAAATGACTGGT
CACATGACGAAAGTCGGCAATTTTTCCCTCCGCCTCAGTTGACtccttgc
tccacccatcccgcCCTGACTTGCTGCAGGTCttagagtttcaaaattga
aaggtcacggctcaaaaccacatgtttattccgtgcgaaaagaagaactt
tgaggATTACGAATCGTAAGAACATGTCGGCCATGGCCCAGTGAAagtta
cttttgaagaattttttggccgctaagacgtagggggggagggggtctga
acctTAACAGCCTCaggccgttaaaaaaaaggaaagtcgtttgtcgacgg
cccctaaaTGTGCGCGCGCATGTGTGAACCTTAAAAgcggaccttatttt
cggctctcaagggtattggccctaccgcgTCGCTGGATTTCAAcaagggt
acatgaaaaaactcaaataggactcaatgtgggttaagtaaacaaaaact
cgTAGCGAATGATGATTCAAAGAAGTGCTTAGCTATCAAAATCTTTTTCC
GACATTTTTCCGACTTGTCCGACTCGGGATTAatgttttgaaggtgagtc
agtcggtgaaggcttcttcataaagacgaaagacatgtatctatttttca
gatccggtatgcgggaatagtgtcaggacctgcaggcgacctagTAGGGT
TttgtatgggtgtggtttgggtgtggttacgtatcagattggctagtaAT
TGGGTtattattatcagttagggttagggttggagctcgaaacaagcact
cttttgtgattttctcctAATACAGACTGGTCTggagtttgtacaatata
aatagccgtcagaagcgCTATCCTGGTATGagtccgtggcgcagtggata
aggcaatgggtttcaactttgcatttagtgggttcgaatcccaccgatgg
cgatctgtcggtaagtcattcagttagaaaacatagaaaataactcacaa
agaaccataaagtcagaaaaactacaaacaagagactggaaagtacgaaa
taagtccagatctgtctttcgtctttgtgaagaagcgagtcggtcgggcg
acgcaaacggaacatattttagcTTGccgccataaaaacaatgatagagc
catgcataattactgtatcatgcatattgtaataattatgcatggtttta
tcattgtttttctgttggactacataattattcaacagtgtggcctcttt
gaaaaaacgTTTATTACTGTAGTTTTAAGTTATTAAAAAATGACATCGAC
CAGCAAAGGTCTATGCTAAATGTCTGTTGTCAAATGAGGAAACTTTTTTT
CCAGTGGATAATATATCTGACAGGTTGTAAATGAGTCCAATGCGTTCGGT
GTGTGATAAAATGCTTAAGAAAAAAGTCTGGTGTTTGTCTGATGTTAAGA
ATTTGCATGAGGATGAGATCACAAGTAACTTGTGTTTGCGTCTTCCGACT
GAATTTTTGAGTCAGAAAGTCACAAAATTGTCAGAATATTATCCAATTCC
ATCCATTTCATCCTTTGTTTCACCTGCCCtctttatttcaattttgacag
ttacatcaatatgccaaaaacattttgttcaaccaccttcacttcaagat
aggccaccatagaatgaacttccttttataggatgaactatattcatgtg
gctttcagccttgcactccatcgcagaggctaatcaattttaatgacttt
tttgactaatgaccaagttataattttttaatttttttatatttgagtat
taaaaaggcatgcattcaaataagaAAGCACGACCGTgcatgaaaaaaag
aaatttaatcaaaattttataaattgaaACATTCACTGTGCAAATTACAA
CAAAGGTCTCATTTTATTTTGGTCTCACAGGAAATATTAGAACTGATTCT
TCCACAATTTGTGGTGTAGCTACTTTAAAAACATGACAAGTTGCTATTTG
ACTTATATCTAGCTCGAGTTGGATTACGATTGGTTCACTATTACAATGAC
CAAAAGATGTGGCCTCAatcagtgtagctctaaagccATAAGAAAAAGCA
TAGAGTAATAGTTTTAAATCATTGCTTGAATGATTATTACTTGTTGTTTG
AATGTTTCTTGACACATGACAGAAAGTCTTTTGTGTGATAATTGTCAAAA
TATGACAGTGTGGTAATTAATTTTGTTACATTTGGTAAATTGATGTTTGG
GAGTGCACTTGATAGTTTTTCATCTGTTTAATATTTTGGTTTGGTTTCTG
GATGCTCTTTTAGGGCTTTAGAGATACACTAGCATATGCAAACTTTCATT
TTAAGTTtcaataagaacattttgtaAAGGTGTCTTGATTAGGCACTTGG
TCTTGGATATATTAAGTGCCTGTCTCCATATTCCTCTTACTATAGAAATG
TATATATATTTTCCAGAGTGctgatttacaaaaaaaatcattgattcTGT
AAAATATACACTTTATCTTTTTAGGTCAGAGAATGGTCTTCTGGTCTAAG
AAAAGAAGGAAGAAAACTTGATAGACAAATTAGAAGTAtgtttacttttc
ttttctttttgatgCTACCATATAAATTGGTATCTACACCTTTTAAATAT
GCTGTAGTATTTAACAATTTTCTAGTATCAATTTTTGTCTAAAAAGTTTT
CACTCTCAGTTACGTAATAAACGGGTAGTTGAACAAATCCTCAAATTTTT
ATGGGGGATCTAGTCGCTGTGATTATCTCTCAATAATCTCAATTTTTGCC
ACTTACCTAAAAAAGGTAATAATAGACCAAAGCctggctatttagagcaa
aataaggaaaTCTTCTTTTGAAAgctgaaagaaattttaaagattaATAA
ACAGGAGCCCTAATAAGGTTGTACTTTAGTACTACACCTGGGACATAATA
GTAAATGCATTGATCCTTAGCAAATGTAAATCTCTAGTCTATTTCTCAAT
GTTTTAATTTACCAAAAGTTATATGTGAGCGTTTACCTGATTTACTATTA
AGATTTTGCTATAAATTTGAAATTCTCTATCTTGATTTTATCTTAGCTAT
CAAAATGGAGGAAGCAAAAGTTCAAAGATCTATCAAGGATGCTGCCAAGA
AGGGGCAAAAGGATGTGTGTACCATATTAGCCAAGGAAATTATCCAGTCC
AGGAAAGCTGTCAACAAACTTTACTCAGCCAAAGCTCAATTGAATTCTGT
TGATATGCAAATGAAAAATCAATTAGGTAAATAATGAAGAATGTCTTTGA
CTATAAACTTTGAATCAGAAAGAaaactttatttcatttattttttaata
cagGATGTTTAAAGGAAAAAGTGTACAAGTTTCATCTGAGATTATTAAAA
AACTAATAACAAGAAGCACAACTATGGTTGAATGTTTCATTTAAAGttat
ttaaagaaattaaatatttatatttat Coding sequence (CDS) from alignment at sc0000047:735422..741998+ >TCONS_00004649 ID=TCONS_00004649|Name=TCONS_00004649|organism=Clytia hemisphaerica|type=CDS|length=1224bp|location=Sequence derived from alignment at sc0000047:735422..741998+ (Clytia hemisphaerica)
ATGGGATTGTTTGGAAAAACACCGAAAAAGGACCCAAAAGAACAGGTCAG
AGAATGGTCTTCTGGTCTAAGAAAAGAAGGAAGAAAACTTGATAGACAAA
TTAGAACTATCAAAATGGAGGAAGCAAAAGTTCAAAGATCTATCAAGGAT
GCTGCCAAGAAGGGGCAAAAGGATGTGTGTACCATATTAGCCAAGGAAAT
TATCCAGTCCAGGAAAGCTGTCAACAAACTTTACTCAGCCAAAGCTCAAT
TGAATTCTGTTGATATGCAAATGAAAAATCAATTAGaaattaaatattta
tatttaATGGGATTGTTTGGAAAAACACCGAAAAAGGACCCAAAAGAACA
GGTCAGAGAATGGTCTTCTGGTCTAAGAAAAGAAGGAAGAAAACTTGATA
GACAAATTAGAACTATCAAAATGGAGGAAGCAAAAGTTCAAAGATCTATC
AAGGATGCTGCCAAGAAGGGGCAAAAGGATGTGTGTACCATATTAGCCAA
GGAAATTATCCAGTCCAGGAAAGCTGTCAACAAACTTTACTCAGCCAAAG
CTCAATTGAATTCTGTTGATATGCAAATGAAAAATCAATTAGaaattaaa
tatttatatttaATGGGATTGTTTGGAAAAACACCGAAAAAGGACCCAAA
AGAACAGGTCAGAGAATGGTCTTCTGGTCTAAGAAAAGAAGGAAGAAAAC
TTGATAGACAAATTAGAACTATCAAAATGGAGGAAGCAAAAGTTCAAAGA
TCTATCAAGGATGCTGCCAAGAAGGGGCAAAAGGATGTGTGTACCATATT
AGCCAAGGAAATTATCCAGTCCAGGAAAGCTGTCAACAAACTTTACTCAG
CCAAAGCTCAATTGAATTCTGTTGATATGCAAATGAAAAATCAATTAGaa
attaaatatttatatttaATGGGATTGTTTGGAAAAACACCGAAAAAGGA
CCCAAAAGAACAGGTCAGAGAATGGTCTTCTGGTCTAAGAAAAGAAGGAA
GAAAACTTGATAGACAAATTAGAACTATCAAAATGGAGGAAGCAAAAGTT
CAAAGATCTATCAAGGATGCTGCCAAGAAGGGGCAAAAGGATGTGTGTAC
CATATTAGCCAAGGAAATTATCCAGTCCAGGAAAGCTGTCAACAAACTTT
ACTCAGCCAAAGCTCAATTGAATTCTGTTGATATGCAAATGAAAAATCAA
TTAGaaattaaatatttatattta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004649-exon-sc0000047-1491911889:735422..735617 | TCONS_00004649-exon-sc0000047-1491911889:735422..735617 | Clytia hemisphaerica | exon |
| TCONS_00004649-exon-sc0000047-1510915933:735422..735617 | TCONS_00004649-exon-sc0000047-1510915933:735422..735617 | Clytia hemisphaerica | exon |
| TCONS_00004649-exon-sc0000047-1575043694:735422..735617 | TCONS_00004649-exon-sc0000047-1575043694:735422..735617 | Clytia hemisphaerica | exon |
| TCONS_00004649-exon-sc0000047-1491911889:741046..741106 | TCONS_00004649-exon-sc0000047-1491911889:741046..741106 | Clytia hemisphaerica | exon |
| TCONS_00004649-exon-sc0000047-1510915933:741046..741106 | TCONS_00004649-exon-sc0000047-1510915933:741046..741106 | Clytia hemisphaerica | exon |
| TCONS_00004649-exon-sc0000047-1575043694:741046..741106 | TCONS_00004649-exon-sc0000047-1575043694:741046..741106 | Clytia hemisphaerica | exon |
| TCONS_00004649-exon-sc0000047-1491911889:741618..741797 | TCONS_00004649-exon-sc0000047-1491911889:741618..741797 | Clytia hemisphaerica | exon |
| TCONS_00004649-exon-sc0000047-1510915933:741618..741797 | TCONS_00004649-exon-sc0000047-1510915933:741618..741797 | Clytia hemisphaerica | exon |
| TCONS_00004649-exon-sc0000047-1575043694:741618..741797 | TCONS_00004649-exon-sc0000047-1575043694:741618..741797 | Clytia hemisphaerica | exon |
| TCONS_00004649-exon-sc0000047-1491911889:741978..741998 | TCONS_00004649-exon-sc0000047-1491911889:741978..741998 | Clytia hemisphaerica | exon |
| TCONS_00004649-exon-sc0000047-1510915933:741978..741998 | TCONS_00004649-exon-sc0000047-1510915933:741978..741998 | Clytia hemisphaerica | exon |
| TCONS_00004649-exon-sc0000047-1575043694:741978..741998 | TCONS_00004649-exon-sc0000047-1575043694:741978..741998 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000047 | supercontig | sc0000047:735422..741998 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005024 | Snf7_fam |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007034 | vacuolar transport |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007034 |
vacuolar transport |
Blast
BLAST of TCONS_00004649 vs. Swiss-Prot (Human)
Match: CHMP3 (Charged multivesicular body protein 3 OS=Homo sapiens GN=CHMP3 PE=1 SV=3) HSP 1 Score: 134.42 bits (337), Expect = 5.143e-39 Identity = 67/97 (69.07%), Postives = 81/97 (83.51%), Query Frame = 2
Query: 152 MGLFGKTPKKDPKEQVREWSSGLRKEGRKLDRQIRTIKMEEAKVQRSIKDAAKKGQKDVCTILAKEIIQSRKAVNKLYSAKAQLNSVDMQMKNQLEI 442
MGLFGKT +K PKE V EWS +RKE R +DRQIR I+ EE KV+RS+KDAAKKGQKDVC +LAKE+I+SRKAV+KLY++KA +NSV M MKNQL +
Sbjct: 1 MGLFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAV 97
The following BLAST results are available for this feature:
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