TCONS_00004640 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004640
Unique NameTCONS_00004640
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2480

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004640 ID=TCONS_00004640|Name=TCONS_00004640|organism=Clytia hemisphaerica|type=transcript|length=2480bp
ATTTAATCGAGCGCCCCGTTATGACGACGGCGTTATGCTCATTGTAAAAA
CATGTATGGGGTTATTTCTAGCTTTCCCCCACATGCCGAAGGCTCTTCCC
CTAAAAAAGcggttaaaaattcaaattttttgactcAATGGTGGAATTTC
GAAATATGCAGTAAACTTAGCACTCCACGATTTTACTATATTGACTTTCC
AATTGTGAAAAGGCTCTTGATGATAAATATGAACTTAATGAAACTTACAC
GTCTAATAATTTAAGACAAACatgataaatttttgaaaatgagataTAGA
AACAGATAGAACTAATTACATAACTTCTACACATTACAACAATTGAAATA
ATTGTTCATTGAATAATTTTAGTTGTCTTAATTGGCATAAGTTTTTCTAA
TGTTTCTAAGTTTCTCAATAGACTCAATCAacacatcaaaaaattcagtg
gtcGATGTTTCCCCACCAATGTCCTGTGTTCTTGCTTTTCCAGAAGTTAC
AATTTTCTGGATGCACATATCTATCAAATGTGCATGTCTGGTAAGTCCTA
AATGCCGTAACATAGCAGTCGATGCAAAAAGGACACTCATTGGGTTTGCA
ATATTAAGCTCAGCAATTCCTTTACCACTATTCCTTGTACCAGActcaaa
aacatttattttttcatttgaattttgGCCTGATGGGATTCCTGGACCAC
CTACTAAGGCTGCAGCAATACTGGTAACAACATTTCCATAAAGATTTGGC
ATAACCATGACATCAAATTGCTCAGGTCGTGAAACCATTTGCATAGCACA
ATTATCAATGATCATATCTTGAAACTCGATTTCAGGGTACTCTTTGGAGA
CTTCTTTGCAACAGCTTAAGAATAGACCATCACTCATTTTCATGATATTT
GCTTTATGTACTGCAGTAACTTTGCTTCGTTCATTTTGTCTGGCAAATTC
AAAGGCATGTTTGGCAATTCTGGTAGAATGTTTCTCAGTTATAATTTTCA
TCATCTCAACAACACCAGAAATGTTTTCATGCTCAAGGTTACTATATTCA
CCTTCAGTATTTTCTCTAACAATCACCAAATCTACGTCACTGTGACGTGT
TTTGACAGTTGGAAAAGATCGACAACGCACAATGTTAGCGTACAAATCCA
AATCATGTCGAAGTGCAACATTAAAAGATTTTCCAGTGATTCTTCCAATG
TCAGTGATCCAGTTACCTTTCAAGGCAACACCGTTACGTTGAATCGCCAT
CTTGACATCCTCAAAAGATGAGAGTATTTCTTCTGGTGTATCTCCAACCA
AATCTACTTGTTCAAAGTCAACAGGTACACCTGCACTTTTGAAAACATCT
TCAACTCCTGCAATCAGTCCTGGGTTAATGCCATGAGATGGAATGAGCGT
AACAGTGTGCCTTCCACCATATGTAGCCGCAGGTAGATCACTGTGGTAAC
CAGAATGCTGAGGAACACTAGATGATAGAAGCGGTTGAAGGATCGGTCTc
gcaaaatttttgctgaaatttcttACTGCGGAggccgccatcttgaaaat
taAGATTAATGTTTTGAGAAGACACACCGTTCTGCAAAATAAACTAACTT
CTTTTTAGTTGAAAAAGCATACTTCAAAGGTACTTTTCAAGCTTTTTGTA
CTTTGAATCGTTTGGCAAACTCAGAAGTTCATTGTTGGTCCACCGTTCAT
TGTGTGTTCACCGTTCATGTACGTTTGGAAGGTGCTcaataatttttgta
aacatcATGGCCGATTTCGAAAATCAACTGCAAGGtttgGGTTCTGCTGG
TGCACTGCAAGTAGGAGCTGCCCTTCAAGAAGATGCATCAAATTATACCA
ATACGTCGCAAGTAGAGCAATTTTGGGCCCTGAAAACACACAAATATGCA
GAAGTTTATATGAAGCTAATTGAGACGGTGGATCCAAAGCTGATAAAACT
GACCAAGTTCGATGACATAATCTATCGACaattcaaaagatattttaaaa
gtttaaagATTGATGTTCTCAATGTTGATGACTTTAAGAGTGACGAATCC
AAAAAGATTTGGAGAAAGTTTTGTGAATCATTCAAAGGAAAAGTCGAGAA
TTACAACTTTGGATCACTGTTGAGAATCGACTGTAATAAAGATTTTTCAG
AAGATAATACGTTATTAGTGACACGTATTCAATTTTACGCCATCGAACTT
GCACGAAATAAACGAGGCTTGAATAAATTCTTCACAAGAAATGCAAATAA
AAACCAAGaggaaaaactgctgactcagcaaatgAACGAGCtgaaaactg
aagaagaaagtTGCAGGTAGCAAAGACTGGGACtagtctttttgaaattt
tgtttttacttcAGTATAAGTCgcttttgtatatttttgtatCACTTTGT
TTTGATAAAGGGAAAAGATTTGGTTGTTCTAAAATGAATTTATGAAAGCA
AATAAATCTCCTTTCCAATAAGCAATATAG
Run BLAST on NCBI

transcript from alignment at sc0000047:542397..555382+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004640 ID=TCONS_00004640|Name=TCONS_00004640|organism=Clytia hemisphaerica|type=transcript|length=12986bp|location=Sequence derived from alignment at sc0000047:542397..555382+ (Clytia hemisphaerica)
ATTTAATCGAGCGCCCCGTTATGACGACGGCGTTATGCTCATTGTAAAAA
CATGTATGGGGTTATTTCTAGCTTTCCCCCACATGCCGAAGGCTCTTCCC
CTAAAAAAGcggttaaaaattcaaattttttgactcAATGGTGGAATTTC
GAAATATGCAGTAAACTTAGCACTCCACGATTTTACTATATTGACTTTCC
AATTGTGAAAAGGCTCTTGATGATAAATATGAACTTAATGAAACTTACAC
GTCTAATAATTTAAGACAAACatgataaatttttgaaaatgagataTAGA
AACAGATAGAACTAATTACATAACTTCTACACATTACAACAATTGAAATA
ATTGTTCATTGAATAATTTTAGTTGTCTTAATTGGCATAAGTTTTTCTAA
TGTTTCTAAGTTTCTCAATAGACTCAATCAacacatcaaaaaattcagtg
gtcGATGTTTCCCCACCAATGTCCTGTGTTCTTGCTTTTCCAGAAGTTAC
AATTTTCTGGATGCACATATCTATCAAATGTGCATGTCTGGTAAGTCCTA
AATGCCGTAACATAGCAGTCGATGCAAAAAGGACACTCATTGGGTTTGCA
ATATTAAGCTCAGCAATTCCTTTACCACTATTCCTTGTACCAGActcaaa
aacatttattttttcatttgaattttgGCCTGATGGGATTCCTGGACCAC
CTACTAAGGCTGCAGCAATACTGGTAACAACATTTCCATAAAGATTTGGC
ATAACCATGACATCAAATTGCTCAGGTCGTGAAACCATTTGCATAGCACA
ATTATCAATGATCATATCTTGAAACTCGATTTCAGGGTACTCTTTGGAGA
CTTCTTTGCAACAGCTTAAGAATAGACCATCACTCATTTTCATGATATTT
GCTTTATGTACTGCAGTAACTTTGCTTCGTTCATTTTGTCTGGCAAATTC
AAAGGCATGTTTGGCAATTCTGGTAGAATGTTTCTCAGTTATAATTTTCA
TCATCTCAACAACACCAGAAATGTTTTCATGCTCAAGGTTACTATATTCA
CCTTCAGTATTTTCTCTAACAATCACCAAATCTACGTCACTGTGACGTGT
TTTGACAGTTGGAAAAGATCGACAACGCACAATGTTAGCGTACAAATCCA
AATCATGTCGAAGTGCAACATTAAAAGATTTTCCAGTGATTCTTCCAATG
TCAGTGATCCAGTTACCTTTCAAGGCAACACCGTTACGTTGAATCGCCAT
CTTGACATCCTCAAAAGATGAGAGTATTTCTTCTGGTGTATCTCCAACCA
AATCTACTTGTTCAAAGTCAACAGGTACACCTGCACTTTTGAAAACATCT
TCAACTCCTGCAATCAGTCCTGGGTTAATGCCATGAGATGGAATGAGCGT
AACAGTGTGCCTTCCACCATATGTAGCCGCAGGTAGATCACTGTGGTAAC
CAGAATGCTGAGGAACACTAGATGATAGAAGCGGTTGAAGGATCGGTCTc
gcaaaatttttgctgaaatttcttACTGCGGAggccgccatcttgaaaat
taAGATTAATGTTTTGAGAAGACACACCGTTCTGCAAAATAAACTAACTT
CTTTTTAGTTGAAAAAGCATACTTCAAAGGTACTTTTCAAGCTTTTTGTA
CTTTGAATCGTTTGGCAAACTCAGAAGTTCATTGTTGGTCCACCGTTCAT
TGTGTGTTCACCGTTCATGTACGTTTGGAAGGTGCTcaataatttttgta
aacatcATGGCCGATTTCGAAAATCAACTGCAAGGtttggtaagtttttt
tttccgaATTATTGTCCTATTTTGAAGTCCTCAATAACTCGCTCAGCTTG
TTGAATGTAGCATGTAGTAGTGAATCTGCTAGATTGTATGAATTGAGTTG
AGGTGTACAAAGGCATCAAATTTTGAGCTTGCATTATTTTGAAGATCTCC
ACCGTTTTTGGGCTGTGgagaggtaaacaaacccgtttttgcctgcgtct
CCTTAGGggacccgtccatattcatttgacaacgcataacgtcaatttga
cgttatcctctgaaCCCCCACCCCCCACAGATAACGTCAAGCCATGTATG
CCAAAAGTTGTCACCATTTTTAATCAAAGTTTTCCCGTTGTTGTAAAGTC
CGTCCGTACACGTACGGAACATACAGGGGGGTCTATGTACAAAAAAGCGG
CATATATCagtcaagaacaagtgcaaattaggataccttcggcaatctct
cctacttaggagagtatcttaaattggatacaaaaaagtatccaaaatag
caatcaacatcctaattaggatatactaaaaaccaaaaaacctgTATTTT
TCACCAACCAGAGACATCCGCGTCATCTTacccaggggatgtcaatcgaa
aaattcgatTGTCTAAtcgatcgaagtcaatcgaagtcgatcgaagtcaa
tccagtcagggcctcctttcattttttttatattacgcaaacggcagtgt
tgCTTGAATCCctcagatccttggttagaaaaagctatacctgtttactt
ttttcttgccagattcaacaagccatcaaccaacaaaattaatactgaca
tcaaaaaattcacacgacctttccactagacacttctaaattatctgcca
ttatgaagatgttcGGTAATTAACCAATTGGGTTTACAAACGGAACTCCT
CTGGGAGTTGGCGAGtcgggaaatgtaaagttacgtaataggtaatacat
aatttttccgggggttaaacgtataaataaaattgaaatggtttgttttt
ttcttcattatatatttaagtttccattatcaaaattctagaaatgctag
tttgtagaccatattagaaaatAGTTATTTATttcgcaaaataaacactt
acaaaaactattacttactatttttacccCTGCTTTTTAAACTGCGTCTT
CTGTGGGCGTGATATCAGGCAGAGACAAAACGCCCTCATCGTAAGATTCT
TGGGTCgtcttattgtttgttccttttgtcgAGTCTGTCGGTCTTATTGT
TCATGCTAAATCTATACACAATGACGTCAATGTTTGGCGGCataactgaa
aataaaaacaaaaaggttatcatattatttttgcataaattacgctacct
tatacgtcattataaaattatacaaaacgaaaGCGAGTCTAGGCCGCCCG
CCTAGAGCGCGggccctaatattttttctcttgcggtcttcaggggaaaa
cgaaagtgatcgatattcttcgaaGGAAGAATTTGCCTTTGCCAAACAAA
Cccctagacaaaaagatgtattttgaggttgggaatggatcctgcgaaga
tgaacaaattttgactaggcgtttttttgtctaatttttttcttcccaca
agctaaaaaggttacaggttttgggcaatcgaggcaaaaatcagaaaaaa
gctGCTGTTCACTGAACGGCAGTGTGTGCTAAATTgtttggtttcgcttt
cgatttcaaacaaATGTcgtagcaacagggcgcgcgtacatagcaacagg
gctgggtagaaaaatctaaacatagaattcaaaaaaaatactgatcatcg
tatagagcactaaaaaataccccctttctatgtttagtttgttctacctt
ggattataactgaaaatatcttcaaaaaacctttgtccgctatcagcccg
ctcggtaatctttgcccgcttcaattcttagatagtAAATAAGAGAgatg
cgcttagctaagccgtgctcgcgggcgataaatttatgtttacttatctt
gtatattatagtggtatttatccaatgaaaaggttgttgacaaaatatgc
acagcACTGATAAAATATGCAcagcattgattatgacatcattaaatatg
tcaatgtcgattcaaggcccgttaaagaaaataattcgtagatagttctt
tttatcttgaaatttagaaatacgaacaaaaaaagaatcaaatttaatat
ttgtttcctatgtaattatattagcgttagaatacggtaaattttcacga
aaaatatttcgcgatggcggtacgcccaattgcacccacgggaaagttcc
aatatTTAATTAtcaggaaatcggggaaaccggttcaccacgtggataaa
atacgtacagaaggttttcaatcagatttattcagataaagctataagag
gttcattactaggattttaaaacctacataaccaaaaacaaaagttgttg
ggaaggaaagagtagacgcaagacagaaggtttggttgtgttgatcaggt
atgtttttattctatccgaactaatgttaaaaaaggcCAAAGAGGCCCTG
ACTGCAATCGAAGTCGATCAAAGTGATcggtcgaatcaatcgaattcgAT
CGAAGTgattgtcgaaccaatcgaagtCGATTgaagatttacattttttt
cctctttatgatcgacttcgattgacttcaatcAACTTCGATTGACTCCA
ATCGACTTCAATcgacttcgattgacttcaatcgacttcgatcgacttgc
ttcacgtgcgtttggtttggggacgcgaaacacgaacgcgaaCTACCCAT
GTAGGGACTTTTAAAATTGCATAACTTATCAAATTGTAGTCTAAAGTGAT
GATGGGGAAGAGATTACAAATAGTATAATCCACATGCCAGTTGTACAAGA
TCCATCAATTGGATCGGTATATCTtatgcatattttgtcaacatcatttt
cattggataaataccactaaaatatacaagataagtaaacataaattcaT
CGCCTGCTAGCGcagcttagctaagcgcacctctcttattcattatctaa
gaattgaagcagGCAAAGATTATCGCTCGAGCTGATAACGGACTaaggtt
atttgaagatattttcagttataatccaaggtaggaCAAATTATACATAG
TTACctgtattttttagtgctctatacgatgatcagtattttttttaaat
tcaatgtttagatttttctacccagtccGGTTGCTACCGTGAGttgtcct
aaatctgacagccctgcctaaatccgactccccaaataactgttatgaaa
ataaattctatgtttacaaacattccctctccaagctgaacaataaacta
ttgcaagaactcttgaaacaaaaGGTCTAACAATATGAcaataatgtcaa
gatgtcaattagataaaaaatgtgtgagtgttgtaaaaataattacctct
attctgtattctgaatccgttgcttGTGTTTAACGCTAAACAATTCagac
aattttgtaataaaaaattatgttttgtataaaagCAATATtcttattgt
tatttggttcaattggttcagtgtatcaaatctctcagtttagttgacac
tttggtatcatTGTTGGGTCACAGCGAAAGggttgttggacctaccccgg
tggaggtcctataaattaacctttgttccgtttgttcgttcgtctgttcg
ttcgttcgttcgttattagctttcctcatgattggctcgttagttttttc
tgattttttgcacaaagatgcataaatataaaccctcgaatgtgacggag
ctcgatttaaaaaaaaaattattttgggcaaatttgggccaaaaaacggc
taaaaaacaggttttttagactttgtgaaaaattaggtcgttaatttttt
ctgattttttgcatgaaagtagggtaccatcgtaggtaaaagatggctta
agcaaatttttgcaaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNgagggcttacttttaaagaatatgtg
tgtttcgacatgaaattttggttgcttggcctgtttttatagaaaaactg
gtcaaattcgatatttttttataagcactttatCGATTatttaggtatta
gcttttcgcgagattggctctttcattctttacgattttttgaacaaaga
tgcataaatataaaccctcgaatgtgacggagctcgattttcaaaaaaaa
attattttgggcaaattagagccaaaaaacggctaaaaaacgggtttttt
ggactttgtgaaaaattaggtcgttaattttttctgattttttgcatgaa
agtaccatcgtaggtaaaagatggcttaagcgaatttttgcaaaaaaatt
ttgttggctcaaaaaacgcatgtttatctataagaatcactattaataag
catacatcaatgttcttagtcaaattactcaattttttttatgagatata
tgtcttttttgctcatgagggcttacttttaaagaatatatgtgtttaga
catgaaatttcggttgtttggcttgtttttatagaaaaactggccaaatt
cgatatttttttataaccacactatcaattacttaggtattagcttttct
cgagattggctcttttattctttatgatcttttgcacaaagatgcttAAC
AATAAACCCTCAAATTTGACTGAgcttgatttttggaaaaaaaattttgg
gataAATTTCACctaaaaaacagctaaaaaaaagggttttttggacttgt
tattttctgactttttgcatgaaattaggtaaaagatggctcaagcagat
ttttgtataaaaagaatttttcagttcaaaaaacgcatatttatctataa
gaatcactattaataagcatacatcaatgttcttaaaattactgaatttt
ttgatgagatatttttttgctctcgaagtcttNatgctgaaattgtttcg
gtatctgaaatccatgaatttttgcttccgaatttcggtattataaagtt
ttcatccccctttttcggaactcatacatgaaaaatcaaatttgatgaca
aattagtcaaaacgaggaaaaataccccaaaaaattgcaagtatcttttt
acggaatttcggaaattttagcaaaattattcggtatttcggaaatcgca
aaccccgtacgcccctcttatgtagatatcaattatatatgtgttaaatg
cataaccaggtaggtccataaaagtatcacttgttttattttatttttta
tctttgaaagaccgcatcagatttaggcagggctgtcggatttaggacca
ctcacagtaTGTACGCGTGCCCTATTGCTAAGACGAttgcttgaaatcaa
aagtgaaaccaaaataatttagcgcacACAGTTCACGTAATATCGACAAA
GTAAAAGGAAGCCCTGACTGATATTATTGTAGATTCATCTAACCTCGACA
TGCGTCTTGTTATCTCAACATGGCTGTACGCTGGTCTTTTAAGCAAAAAG
TCAAACATTAATAAATACACACTAAAGTTACCAATCAATCAGTAAATTGT
ACTatccctatcacgtcacagatcaTTGATATGAAAAATGTGACTGTTTG
AAAACTTTAGCAATGTAGTTAttatcactaaaaaactaattagtatgctt
tcaacgaagatatccaaatcaaaacaacatttttcatGCGAGGaattttt
agtagacctttttactgcaaatcaaaaacaataaaaagaactcggtttcc
ttttgaatttaatgacCGCCTTACTGCCAACCCAACTCTGCCCTGCCATC
ACGgcaattgaaatgaaaaacagGGAGTCGTATGTGCGTGCagcctagag
cgtgtgtttgTGATGAATAAGGACAAGGAAACCAGGCTGCCTTAGCGCGC
AAGTTATTTTTATCATGTGACTTGAAGCGTattaaagttgtaaaatttta
atgatggacacaagACTGCACAAGAACATTTGCATTCGTTTCATGGGTTG
TGTAAAATTGCTTCTCTCatttggctgcttttttaattgaaagaattgca
atGTTAACTGAACTTCTTGTTTGATAGATGAACTTGTTCAATGAGAATAA
TACTAAGATTATTCattaaaggtttgttttaacTATTTTGCAGATCTGGT
GTTGAGGTTAGAAGAATCTGACAGCTGATCTGCAAAATAGTCAAAACATA
CCTTTAATGAAATTCTTAGTATTATTCTTATGATACATCCAtcaaactac
aatcatggtcgtaatatttgagaaaaagggaaatccaccggaaagttttg
aaaccacaatcgatttgtaagtgctctaaagtaggctGGAAGGGTAAGTT
TTAACTGAGTTTTAACATACGAAACTTAGGactttaggatctgaggatcc
aaaagttcaaaaaatggtccaataaggctcataatatagcaTAGAGGTCT
ATAAccccgagccaaattgaaatatccgattaaatatgagagatggccca
aaatcgactttctcatccgaactccaaatttcgaaaaacaaggaaataag
cttaattctcaatagatttcgaccatgattatagaagttcagtaaacatt
gcaaaattctttcaataaaaaaactagcctggatatccaagctgtaaact
attttaccgtctagttttttatattttatgttctggtttacggCCTGGTC
TTCCAACAACAAAGGGCATATAATCGAAAATATGTTTTGTCCTTGGTCTC
TTTTGGTTGATTACCAcatggccccccccccccaNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTTTACCATGTAAACCAGTTATTAAAGCAAAGACAGAAATCTATCT
ATTTCCACATATTTTCCTGGTTTAGGGTTCTGCTGGTGCACTGCAAGTAG
GAGCTGCCCTTCAAGAAGATGCATCAAATTATACCAATACGGTAAGGCTA
GCAATACTAAAAATTTTTGTAACCTTCTGTTCAGCTAAAATCTCTATTCT
CTATCTCTATTCTCTCCAAAAATAATACTGTAGATTTTATTGTCATTTGT
TATTGGCATGATGACAACTTTCTCATCATTCACAACAATGAGTTAAAAAG
AAGAACttttccatcatttttattgATTACGCTTTCACATTTTAGTCGCA
AGTAGAGCAATTTTGGGCCCTGAAAACACACAAATATGCAGAAGTTTATA
TGAAGGTATGAAAAAACAACCTGTAATCAGCATCTTTTACTGTCAAGTCA
CTTTGACAAACTAAATCACAAAGCTGCCTGTAGCATTGTTTTCTAACCGT
TTTCAATATAAGTTTTAATGAATTTTACTATGATATTTGTACTGTTGGCA
TGAATAGTGTTTAAAGATGTTTCTAGCCAAAAGAGCAATAGTCGATTAAC
AATTTTTTGTAAGATTCTCTAAGAATAGTCAATttagacctcttttttta
tcacCTTTAGCTAATTGAGACGGTGGATCCAAAGCTGATAAAACTGACCA
AGTAAGCTTAAGTATCTATAAAGCACTTGACCCTCTCCTATTCGATATTC
AAGTGGCCAAgcgtttttttgaatttaaaagtaGAGTTTAAAAACAACAT
GCATGATATGGAATATTGAAttgtatattacattatataaCATGTAATGA
CGTTGTCTTTTTCGTTTAAACTTTCTCACTCTCGTTCTCATCTTTTTTTC
CTAGGTTCGATGACATAATCTATCGACaattcaaaagatattttaaaagt
ttaaaggTGAAGTTGAGGATGAATTTTCTTCTCTGAAAAAAGCCTTATTT
TATTGATTGTGTTTTCTTGCCTAGTACAAATACCGGGTTACTCAAAGTTA
CTTTTCCAAATAGGTTTCTTTGACAAGAAACCTGGAGATATGAAAAGCAT
TTCGCTAAATCATGTTGtttgtaaattgtaaattttgttGACAATGGATT
CAGCAAGAGTGTCACCAGGGCGAATGTAATTGTATCGCATATTTCTGTTC
TCATATTTTTATTTGTCTGTAGGCAGCGACTATTTTATGAGTAATGACTA
CTTCTCGACATCTAAAGATAGTAAAAATATCGAGGAACTGTAGGAATTTC
GTTCTTTTTATGGTGCACGATGAAACTTTTAAAGTatgattataaaaata
attatatctTGTATCCACTAGATTGATGTTCTCAATGTTGATGACTTTAA
GAGTGACGAATCCAAAAAGGTACATGACTTGCTTTTGAATTAAATAATTC
TCTGAAGAAGAAGAGACTCGTTGAAGAAACAATTATTTTAGAAACTAAAG
AAACATTAATCAAATTTATGGCATCCTTCTTTCCTAGTACTCGTTTGTGT
TAAAAATTATGCGTAAGTGCGTTAAGTGTACCTAAGTGCGTTTATCAGGT
AGGCTCACTTAATATAAACTCCATTTTAAGTACCCACTCTACAAGgtaaa
ataagagaaaaaagttCGGCGTAGTTAAACACGATAGAAAAATTCCCctg
ttttaaaattcaataaTAATTGAATAGTGTTTACACCCATAGTCTTTGAT
GATCGTGTCGAATTGTCAAAATTTATGATACATGCATTTAAGTGGAAGGC
ACCTACCGTTTAAATAAAGGTAATTGGTTGATTTTGTAAGGTCTTATCTG
ATATATTCCCTTACTCTCTTAATCGAGTAATTATGTAATTTTACGCGTGT
CTTTTCAGATTTGGAGAAAGTTTTGTGAATCATTCAAAGGAAAAGTCGAG
AATTACAACTTTGGATCACTGTTGAGGTATTATTTCATAATGGTTTTACA
TTTCAATATTAGTTGGAGATTGGAAATGATTTAGGACTCAAGCTAACCGT
AGATTTCCATAAAAATCTAATCATTTTTTAGGCTGATAGAATTAgctcaa
aaatatcttcaaaataataataatatacggttgaaatttggcaaaagCTT
TTGTTTGGGTCCTAGAACCGCCGGACGAAATTTGCAGccaatttgaaaaa
ttctttttttcgaattcACCCTTCTAAAAATTCGGTTCGCCGACTCATTT
ACCAATTAATACATTTGCTTGTCTATACATCTATAATTTCCTCtagattt
aaattttcattcgCCAGCCTAGCAAAATTATAGCAAAACCCTTGTGTAGA
TAACGAAATTGGGGATCTATGTAAATTGTTGTGAAATGACCATGAATTCG
CTATTTTCCTTGTGACGTCACCAGCTGCCCAGTGAGGGGTTTGTACCGGG
GTTTGTACTGGAAATTGACATCAATGTCTCAAAAAAGGgtccaaattttt
caaatgagCTGTGGCTTTTAGTCCTAAAAAAGGTACCTATGTGCAAAGTT
TCAGccagatatttttatttttaggtaaaaaaaaacatttgcgGCAGATA
AGGCCATGATTCCGAGCccatttttgtgtgatttttatGTCAAGAAGTGA
AATAAATTAATGCAAGGGTAAAAGAGTTTATTTGTTGTGGAGGTCTCTGC
AAATCTTTTTCGTGAAAATTCGGTTCATTTCTTCCTGTGATTAGCTTAAC
AAAATTACTAAATGATACTGGATTAATTGAGATCCGCAGCTCTGTAAATG
ATGAATTTATAGCagcatagcgtcagccccccctgctgatttgggggggg
gggttacaccctaaaAAGGAGGGGACTGGAAGTTcaccacttttttgggg
ggacctatgtacttgGGGGGGGGGACTAAAATCTTATCACTTAACTTGGG
AGCTAAAATAATTCACCTTAATaggttggcttcaattactcaaattgaag
ctcacgaaaaattttctcaactgaacgcaatttacattggaaaaatcttt
tttactggatcaattttttgaagtttctagggtcaaaagtcctgggggct
aacaaaaaattcataaatctttgagggaacttaaaactcaggggggacct
aatttttgcctgggacctaaaacCATGCTGATGCTATGTTTGTAAATGCA
CTGATGATTGTAATTGGACTTTCACACTATTTCGTTATAGAATCGACTGT
AATAAAGATTTTTCAGAAGATAATACGTTATTAGGTAAGCAGGTTTCATT
TCAGCGGTTCATTTTAAGTTCTACCCCGGAGAAAAATATACACAAATTGT
TCAATTTGAAgctgatttttttaattatttacatattcataaaaaaagtt
gatcaaattgatGGATATAGATGGTTTGatttttaagttgttttttacat
aattttccttttttatattACCAGTGACACGTATTCAATTTTACGCCATC
GAACTTGCACGAAATAAACGAGGCTTGAATAAATTCTTCACAAGAAATGC
AAATAAAAACCAAGaggaaaaactgctgactcagcaaatgAACGAGCtga
aaactgaagaagaaagtTGCAGGTAGCAAAGACTGGGACtagtctttttg
aaattttgtttttacttcAGTATAAGTCgcttttgtatatttttgtatCA
CTTTGTTTTGATAAAGGGAAAAGATTTGGTTGTTCTAAAATGAATTTATG
AAAGCAAATAAATCTCCTTTCCAATAAGCAATATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002613XLOC_002613Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004640-exon-sc0000047-1491911889:542397..544185TCONS_00004640-exon-sc0000047-1491911889:542397..544185Clytia hemisphaericaexon
TCONS_00004640-exon-sc0000047-1510915933:542397..544185TCONS_00004640-exon-sc0000047-1510915933:542397..544185Clytia hemisphaericaexon
TCONS_00004640-exon-sc0000047-1575043694:542397..544185TCONS_00004640-exon-sc0000047-1575043694:542397..544185Clytia hemisphaericaexon
TCONS_00004640-exon-sc0000047-1491911889:551672..551737TCONS_00004640-exon-sc0000047-1491911889:551672..551737Clytia hemisphaericaexon
TCONS_00004640-exon-sc0000047-1510915933:551672..551737TCONS_00004640-exon-sc0000047-1510915933:551672..551737Clytia hemisphaericaexon
TCONS_00004640-exon-sc0000047-1575043694:551672..551737TCONS_00004640-exon-sc0000047-1575043694:551672..551737Clytia hemisphaericaexon
TCONS_00004640-exon-sc0000047-1491911889:551942..552001TCONS_00004640-exon-sc0000047-1491911889:551942..552001Clytia hemisphaericaexon
TCONS_00004640-exon-sc0000047-1510915933:551942..552001TCONS_00004640-exon-sc0000047-1510915933:551942..552001Clytia hemisphaericaexon
TCONS_00004640-exon-sc0000047-1575043694:551942..552001TCONS_00004640-exon-sc0000047-1575043694:551942..552001Clytia hemisphaericaexon
TCONS_00004640-exon-sc0000047-1491911889:552257..552297TCONS_00004640-exon-sc0000047-1491911889:552257..552297Clytia hemisphaericaexon
TCONS_00004640-exon-sc0000047-1510915933:552257..552297TCONS_00004640-exon-sc0000047-1510915933:552257..552297Clytia hemisphaericaexon
TCONS_00004640-exon-sc0000047-1575043694:552257..552297TCONS_00004640-exon-sc0000047-1575043694:552257..552297Clytia hemisphaericaexon
TCONS_00004640-exon-sc0000047-1491911889:552501..552552TCONS_00004640-exon-sc0000047-1491911889:552501..552552Clytia hemisphaericaexon
TCONS_00004640-exon-sc0000047-1510915933:552501..552552TCONS_00004640-exon-sc0000047-1510915933:552501..552552Clytia hemisphaericaexon
TCONS_00004640-exon-sc0000047-1575043694:552501..552552TCONS_00004640-exon-sc0000047-1575043694:552501..552552Clytia hemisphaericaexon
TCONS_00004640-exon-sc0000047-1491911889:552968..553015TCONS_00004640-exon-sc0000047-1491911889:552968..553015Clytia hemisphaericaexon
TCONS_00004640-exon-sc0000047-1510915933:552968..553015TCONS_00004640-exon-sc0000047-1510915933:552968..553015Clytia hemisphaericaexon
TCONS_00004640-exon-sc0000047-1575043694:552968..553015TCONS_00004640-exon-sc0000047-1575043694:552968..553015Clytia hemisphaericaexon
TCONS_00004640-exon-sc0000047-1491911889:553505..553572TCONS_00004640-exon-sc0000047-1491911889:553505..553572Clytia hemisphaericaexon
TCONS_00004640-exon-sc0000047-1510915933:553505..553572TCONS_00004640-exon-sc0000047-1510915933:553505..553572Clytia hemisphaericaexon
TCONS_00004640-exon-sc0000047-1575043694:553505..553572TCONS_00004640-exon-sc0000047-1575043694:553505..553572Clytia hemisphaericaexon
TCONS_00004640-exon-sc0000047-1491911889:554837..554880TCONS_00004640-exon-sc0000047-1491911889:554837..554880Clytia hemisphaericaexon
TCONS_00004640-exon-sc0000047-1510915933:554837..554880TCONS_00004640-exon-sc0000047-1510915933:554837..554880Clytia hemisphaericaexon
TCONS_00004640-exon-sc0000047-1575043694:554837..554880TCONS_00004640-exon-sc0000047-1575043694:554837..554880Clytia hemisphaericaexon
TCONS_00004640-exon-sc0000047-1491911889:555071..555382TCONS_00004640-exon-sc0000047-1491911889:555071..555382Clytia hemisphaericaexon
TCONS_00004640-exon-sc0000047-1510915933:555071..555382TCONS_00004640-exon-sc0000047-1510915933:555071..555382Clytia hemisphaericaexon
TCONS_00004640-exon-sc0000047-1575043694:555071..555382TCONS_00004640-exon-sc0000047-1575043694:555071..555382Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000047supercontigsc0000047:542397..555382 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
127.187	128.13	85.4529	77.9432	30.0422	23.4553	38.2809	38.8336	44.1558	36.4294	32.4893	36.67	39.4087	36.5353	43.3937	44.422	93.9774	104.549	25.3058	25.8751	89.6948	86.2602	84.7217	79.7677	67.1909	56.5941	49.8549	44.4689	41.0928	44.5616
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR024084IsoPropMal-DH-like_dom
IPR004434Isocitrate_DH_NAD
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0006099tricarboxylic acid cycle
Vocabulary: Molecular Function
TermDefinition
GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0004449isocitrate dehydrogenase (NAD+) activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006099 tricarboxylic acid cycle
molecular_function GO:0004449 isocitrate dehydrogenase (NAD+) activity
molecular_function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
Blast
[Close]
BLAST of TCONS_00004640 vs. Swiss-Prot (Human)
Match: IDH3G (Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial OS=Homo sapiens GN=IDH3G PE=1 SV=1)

HSP 1 Score: 366.311 bits (939), Expect = 7.747e-118
Identity = 184/340 (54.12%), Postives = 239/340 (70.29%), Query Frame = -1 
Query:  417 PAATYGGRHTVTLIPSHGINPGLIAGVEDVFKSAGVPVDFEQVDLVGDTPEEILSSFEDVKMAIQRNGVALKGNWITDIGRI-TGKSFNVALRHDLDLYANIVRCRSFPTVKTRHSDVDLVIVRENTEGEYSNLEHENISGVVEMMKIITEKHSTRIAKHAFEFARQNERSKVTAVHKANIMKMSDGLFLSCCKEVSKEYPEIEFQDMIIDNCAMQMVSRPEQFDVMVMPNLYGNVVTSIAAALVGGPGIPSGQNSNEKINVFESGTRNSGKGIAELNIANPMSVLFASTAMLRHLGLTRHAHLIDMCIQKIVTSGKARTQDIGGETSTTEFFDVLIESI 1433
            P+A YGGRHTVT+IP  GI P L+  V+ VF+ A VPVDFE+V +  +  EE      +  MAI+RN VALKGN  T+     + KS N  LR  LDLYAN++ C+S P V TRH D+D++IVRENTEGEYS+LEHE+++GVVE +KIIT+  S RIA++AF+ A+++ R KVTAVHKANIMK+ DGLFL CC+EV+  YP+I F++MI+DN  MQ+VSRP+QFDVMVMPNLYGN+V ++ A LVGGPG+ +G N      VFE+ TRN+GK IA  NIANP + L AS  ML HL L  +A  I   +   + +    T DIGG+ +T+E    +I  I
Sbjct:   47 PSAKYGGRHTVTMIPGDGIGPELMLHVKSVFRHACVPVDFEEVHVSSNADEE---DIRNAIMAIRRNRVALKGNIETNHNLPPSHKSRNNILRTSLDLYANVIHCKSLPGVVTRHKDIDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSLRIAEYAFKLAQESGRKKVTAVHKANIMKLGDGLFLQCCREVAARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYGHVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNENMHTPDIGGQGTTSEAIQDVIRHI 383
The following BLAST results are available for this feature:
BLAST of TCONS_00004640 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IDH3G7.747e-11854.12Isocitrate dehydrogenase [NAD] subunit gamma, mito... [more]
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