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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004618 ID=TCONS_00004618|Name=TCONS_00004618|organism=Clytia hemisphaerica|type=transcript|length=1238bp
ATCGACTAACTTTTTTCCATCCAAACATCGCATCAATACAATGTCTCGAT
TTAAAAATTGTAAGGAATTTAATCTGAGCCGGTGTGTATCATTATTTTCA
ACAGGAAATGCAAACAGGAACTGCAGGAAATGGCGTGCATTGGTGTGACA
TGCGCAGTAAATGCGACTTGTTATCCTACAGGAGCATTCACATCAGAATG
TCAATGTGATGATGGATTTGAAGGTGACGGTGTCAACTTCTGTAAAGAAC
CCTCATTTAAGCATTTGATGTTGATGTTCATCATATTGGCAGCTGGTCTT
ATATTCCTGATTTCTATACTCAGTATAATTGTCAACTTACAAAGAAGTGT
CATGAATGATAAAAAGGTGACCAAAGTGCAGAACAAGAAGAAAGACCCTT
TCAATATCAATTGGCATGCGTATTTTATTGAATGGCGTAATACAACTATA
AGTGGGCGTAAACCTAAAGCAAGATCACCATTGAATTTGAATCCGGAGAA
TGAAGAGGGCGCGCTGGGCGTAATACCCACTACAAGTTTTGAGTATGGAC
ACGAAGAAAGGGCGGTTGATGTTCCAGAAGCAAGACCAGATTCATGCATC
GACATTACAGAGTCAGAGGACGGGCTAACACCCGAAAGGAAATTTGGTCT
TGATAACCCAGGTTTTGATGAAGTTGATGTCAAGGCTAAAACTGATATAA
GCGAACCCAAAATTGACCTCAATAGCCCAAGTTCTGATGAACAATTGGTG
GTTCGGGAACCGTATACATCAAAAGATTCGTTTAAAGAGAATCGATCAAG
CCCGAGGGTAATCAAATCGACGGGTGGCAAAAGTGATCAGAGCATAGTTC
TAACCGGacataagaaaattgaaaaatattaagcaaaaataaaaacctCG
CTCGAAGTGGTCGAAGTACTCTTTTGTTTACATtcactaaatgaaaaaaa
atggttGGTAATAAAAGCCATAGGACACTGGTAAATTTCACATCGCTCTT
TTTAACAGAAGACAATTTAGGTATTCATGTGATTGGAAAAGTTGCTATGT
TAGCAACAATCAAAGTTCTGCAAGAAGATCTATAAAATCACATACAGGTT
ATTGTAAATTAATTGACCATTTAGATTTATTAGATGATTGTAAGAGTTGA
TTCTTTTTTAGAACTCTTCAGTATCTTATAGGATTTTAGTaatttctaac
ttttattaGCTAACAACAAGaataaattttaacaaaac Run BLAST on NCBI protein sequence of TCONS_00004618-protein >TCONS_00004618-protein ID=TCONS_00004618-protein|Name=TCONS_00004618-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
MACIGVTCAVNATCYPTGAFTSECQCDDGFEGDGVNFCKEPSFKHLMLMF
IILAAGLIFLISILSIIVNLQRSVMNDKKVTKVQNKKKDPFNINWHAYFI
EWRNTTISGRKPKARSPLNLNPENEEGALGVIPTTSFEYGHEERAVDVPE
ARPDSCIDITESEDGLTPERKFGLDNPGFDEVDVKAKTDISEPKIDLNSP
SSDEQLVVREPYTSKDSFKENRSSPRVIKSTGGKSDQSIVLTGHKKIEKY Run BLAST on NCBI transcript from alignment at sc0000047:288424..291532+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004618 ID=TCONS_00004618|Name=TCONS_00004618|organism=Clytia hemisphaerica|type=transcript|length=3109bp|location=Sequence derived from alignment at sc0000047:288424..291532+ (Clytia hemisphaerica)
ATCGACTAACTTTTTTCCATCCAAACATCGCATCAATACAATGTCTCGAT
TTAAAAATTGTAAGGAATTTAATCTGAGCCGGTGTGTATCATTATTTTCA
ACAGGAAATGCAAACAGGAACTGCAGGAAATGGCGTGCATTGGTGTGACA
TGCGCAGTAAATGCGACTTGTTATCCTACAGGAGCATTCACATCAGAATG
TCAATGTGATGATGGATTTGAAGGTGACGGTGTCAACTTCTGTAAAGAAC
CCTCATTTAGTAAGTACCTTAAGATCCCACCTcgctcccactggaaaaat
attAGTCNTTAGTAAGTACCTTAAGACCCCACCTcgctcccactggaaaa
atattagtcaaaatatcgtccccagtggaaaattatactggGATTTTTAT
cctctgtaaaataatcaaataaacaaatcctctcTACTGGTCTGCTAGAA
GGGATTGATTGGCTTTAAATCTGTTTCAGCGTTATTAGGGCTTTTGGATA
GGCTTTCGTATATTGATCTATATCACTTCTTAGAGCAAAAATAAATGTTT
CAAATACACTTCTATTATATGAAAAGccatttttccatccccatGGGTTA
TTTCGCTCGTTAATTTGATCTCATTCGCTGGATCATTGAAACAGAAATGG
AGCATCTCCATGAATGCTTTTGTgtaataacacccctgtgtcacagaccc
actgggacccccggtgggaaaataccctacaatttcagtcCTGCTgggaa
attcaatttcatttcatccccattcattAGAAATTAAATGTataaaattg
tactccaaaaccaccccactgaatttttcaaccttgaaacaatagaaatt
tctgTCCCCATCGAGATTTCCATAGTAATTCCTATCCCAATGTGGACATT
TCCattggggctgtgagacagggattcATATTTAAGAGGGATCTTCGTAA
AACTTAATATAATACATAAATTTGGCCTAAAATAAGAGCAAGAACAATAT
CCATGCctcaaatttcagaaatattGAATATCAGGCAATAAGTGAACAAA
GTGAACATatcaagaacaatttaagatCAATTAAGCtggaaaaatcatga
aaagaaaagaaatcccAATCTCAACTAAAACTCACTACCGGagactggtt
cttataaaaagcgtgaaatttatcatttttcttcgtAGAGCATTTGATGT
TGATGTTCATCATATTGGCAGCTGGTCTTATATTCCTGATTTCTATACTC
AGTATAATTGTCAACTTACAAAGAAGTGTCATGAATGATAAAAAGTAAGT
AAATCCTGAAAACCtgaaaacaaagtcaatctAAATCCATTATAACTAAC
TTTacagggggggtactagggttggagGATGTCGGGTATTTACGGTCCGG
AACTCTGAAAACCGAGATAATGAGacttaatttttgtgaaaaatttacgA
CTTAGAGAGAGAAAAACGGCCAAAAAGTTACTGTTAGAGATTNCGAAAAA
TTTACGACATAGATAGAGAAAAACGGCGAAAAAGTTACTCTTAGAGAGAG
AAAATCTcctggattttttataagaataagttaagaacatttttaggctt
aaaacccaaaaagttaagaacatccaaaggcttcaaaaatcttggatgct
cttataaaaaaacaaaaacgtgtatttggCGTGGATAAACTCAATAATCT
AGGGTTCCACGGCAGTTTATGAGCTGATGAACTGAGCATGGGAAAAGCGT
GGATGCCAAAACCAGGAACCTCTGGTTCGTGGCACTGACACCTTTGAACG
CACAGCTAGCGCATTAACTGtgcttttattttcaataatgtTTTAAACCT
TGTTATCAATAAATTGTTAGGGTGACCAAAGTGCAGAACAAGAAGAAAGA
CCCTTTCAATATCAATTGGCATGCGTATTTTATTGAATGGCGTAATACAA
CTATAAGTGGGCGTAAACCTAAAGCAAGGTCAGTGAGTTCATGGTTTTTA
CCAAAGTTTATATCTAACCATTAGTCGGGATCAGTAAATAAGATATATAA
GTGTTCCGGATTTTTTCCGCATAAAAATATAGCAAAGTTTAGAACTACTT
GAGTCTTAGCTTCGCTGGCTCGCGAGGGCTGAGGGTTTCCTGGTTACTTG
AGTCTTTACCCCTTTAACTTTAAACCCAAGTGTATAGACGTTCAAAATTG
AAAGGCTATAACTTCCggccacttgatttaaaagggcatgaaaaagcTAA
GAAACAGGGTCTTGATTTTTCAGAATATCACCAGAACTATACGAACAATT
TCTAATAGACTGATATTCTCCTTTATTCTATAATGTTGTTTTAGATCACC
ATTGAATTTGAATCCGGAGAATGAAGAGGGCGCGCTGGGCGTAATACCCA
CTACAAGTTTTGAGTATGGACACGAAGAAAGGGCGGTTGATGTTCCAGAA
GCAAGACCAGATTCATGCATCGACATTACAGAGTCAGAGGACGGGCTAAC
ACCCGAAAGGAAATTTGGTCTTGATAACCCAGGTTTTGATGAAGTTGATG
TCAAGGCTAAAACTGATATAAGCGAACCCAAAATTGACCTCAATAGCCCA
AGTTCTGATGAACAATTGGTGGTTCGGGAACCGTATACATCAAAAGATTC
GTTTAAAGAGAATCGATCAAGCCCGAGGGTAATCAAATCGACGGGTGGCA
AAAGTGATCAGAGCATAGTTCTAACCGGacataagaaaattgaaaaatat
taagcaaaaataaaaacctCGCTCGAAGTGGTCGAAGTACTCTTTTGTTT
ACATtcactaaatgaaaaaaaatggttGGTAATAAAAGCCATAGGACACT
GGTAAATTTCACATCGCTCTTTTTAACAGAAGACAATTTAGGTATTCATG
TGATTGGAAAAGTTGCTATGTTAGCAACAATCAAAGTTCTGCAAGAAGAT
CTATAAAATCACATACAGGTTATTGTAAATTAATTGACCATTTAGATTTA
TTAGATGATTGTAAGAGTTGATTCTTTTTTAGAACTCTTCAGTATCTTAT
AGGATTTTAGTaatttctaacttttattaGCTAACAACAAGaataaattt
taacaaaac Coding sequence (CDS) from alignment at sc0000047:288424..291532+ >TCONS_00004618 ID=TCONS_00004618|Name=TCONS_00004618|organism=Clytia hemisphaerica|type=CDS|length=3012bp|location=Sequence derived from alignment at sc0000047:288424..291532+ (Clytia hemisphaerica)
ATGGCGTGCATTGGTGTGACATGCGCAGTAAATGCGACTTGTTATCCTAC
AGGAGCATTCACATCAGAATGTCAATGTGATGATGGATTTGAAGGTGACG
GTGTCAACTTCTGTAAAGAACCCTCATTTAAGCATTTGATGTTGATGTTC
ATCATATTGGCAGCTGGTCTTATATTCCTGATTTCTATACTCAGTATAAT
TGTCAACTTACAAAGAAGTGTCATGAATGATAAAAAGGTGACCAAAGTGC
AGAACAAGAAGAAAGACCCTTTCAATATCAATTGGCATGCGTATTTTATT
GAATGGCGTAATACAACTATAAGTGGGCGTAAACCTAAAGCAAGATCACC
ATTGAATTTGAATCCGGAGAATGAAGAGGGCGCGCTGGGCGTAATACCCA
CTACAAGTTTTGAGTATGGACACGAAGAAAGGGCGGTTGATGTTCCAGAA
GCAAGACCAGATTCATGCATCGACATTACAGAGTCAGAGGACGGGCTAAC
ACCCGAAAGGAAATTTGGTCTTGATAACCCAGGTTTTGATGAAGTTGATG
TCAAGGCTAAAACTGATATAAGCGAACCCAAAATTGACCTCAATAGCCCA
AGTTCTGATGAACAATTGGTGGTTCGGGAACCGTATACATCAAAAGATTC
GTTTAAAGAGAATCGATCAAGCCCGAGGGTAATCAAATCGACGGGTGGCA
AAAGTGATCAGAGCATAGTTCTAACCGGacataagaaaattgaaaaatat
taaATGGCGTGCATTGGTGTGACATGCGCAGTAAATGCGACTTGTTATCC
TACAGGAGCATTCACATCAGAATGTCAATGTGATGATGGATTTGAAGGTG
ACGGTGTCAACTTCTGTAAAGAACCCTCATTTAAGCATTTGATGTTGATG
TTCATCATATTGGCAGCTGGTCTTATATTCCTGATTTCTATACTCAGTAT
AATTGTCAACTTACAAAGAAGTGTCATGAATGATAAAAAGGTGACCAAAG
TGCAGAACAAGAAGAAAGACCCTTTCAATATCAATTGGCATGCGTATTTT
ATTGAATGGCGTAATACAACTATAAGTGGGCGTAAACCTAAAGCAAGATC
ACCATTGAATTTGAATCCGGAGAATGAAGAGGGCGCGCTGGGCGTAATAC
CCACTACAAGTTTTGAGTATGGACACGAAGAAAGGGCGGTTGATGTTCCA
GAAGCAAGACCAGATTCATGCATCGACATTACAGAGTCAGAGGACGGGCT
AACACCCGAAAGGAAATTTGGTCTTGATAACCCAGGTTTTGATGAAGTTG
ATGTCAAGGCTAAAACTGATATAAGCGAACCCAAAATTGACCTCAATAGC
CCAAGTTCTGATGAACAATTGGTGGTTCGGGAACCGTATACATCAAAAGA
TTCGTTTAAAGAGAATCGATCAAGCCCGAGGGTAATCAAATCGACGGGTG
GCAAAAGTGATCAGAGCATAGTTCTAACCGGacataagaaaattgaaaaa
tattaaATGGCGTGCATTGGTGTGACATGCGCAGTAAATGCGACTTGTTA
TCCTACAGGAGCATTCACATCAGAATGTCAATGTGATGATGGATTTGAAG
GTGACGGTGTCAACTTCTGTAAAGAACCCTCATTTAAGCATTTGATGTTG
ATGTTCATCATATTGGCAGCTGGTCTTATATTCCTGATTTCTATACTCAG
TATAATTGTCAACTTACAAAGAAGTGTCATGAATGATAAAAAGGTGACCA
AAGTGCAGAACAAGAAGAAAGACCCTTTCAATATCAATTGGCATGCGTAT
TTTATTGAATGGCGTAATACAACTATAAGTGGGCGTAAACCTAAAGCAAG
ATCACCATTGAATTTGAATCCGGAGAATGAAGAGGGCGCGCTGGGCGTAA
TACCCACTACAAGTTTTGAGTATGGACACGAAGAAAGGGCGGTTGATGTT
CCAGAAGCAAGACCAGATTCATGCATCGACATTACAGAGTCAGAGGACGG
GCTAACACCCGAAAGGAAATTTGGTCTTGATAACCCAGGTTTTGATGAAG
TTGATGTCAAGGCTAAAACTGATATAAGCGAACCCAAAATTGACCTCAAT
AGCCCAAGTTCTGATGAACAATTGGTGGTTCGGGAACCGTATACATCAAA
AGATTCGTTTAAAGAGAATCGATCAAGCCCGAGGGTAATCAAATCGACGG
GTGGCAAAAGTGATCAGAGCATAGTTCTAACCGGacataagaaaattgaa
aaatattaaATGGCGTGCATTGGTGTGACATGCGCAGTAAATGCGACTTG
TTATCCTACAGGAGCATTCACATCAGAATGTCAATGTGATGATGGATTTG
AAGGTGACGGTGTCAACTTCTGTAAAGAACCCTCATTTAAGCATTTGATG
TTGATGTTCATCATATTGGCAGCTGGTCTTATATTCCTGATTTCTATACT
CAGTATAATTGTCAACTTACAAAGAAGTGTCATGAATGATAAAAAGGTGA
CCAAAGTGCAGAACAAGAAGAAAGACCCTTTCAATATCAATTGGCATGCG
TATTTTATTGAATGGCGTAATACAACTATAAGTGGGCGTAAACCTAAAGC
AAGATCACCATTGAATTTGAATCCGGAGAATGAAGAGGGCGCGCTGGGCG
TAATACCCACTACAAGTTTTGAGTATGGACACGAAGAAAGGGCGGTTGAT
GTTCCAGAAGCAAGACCAGATTCATGCATCGACATTACAGAGTCAGAGGA
CGGGCTAACACCCGAAAGGAAATTTGGTCTTGATAACCCAGGTTTTGATG
AAGTTGATGTCAAGGCTAAAACTGATATAAGCGAACCCAAAATTGACCTC
AATAGCCCAAGTTCTGATGAACAATTGGTGGTTCGGGAACCGTATACATC
AAAAGATTCGTTTAAAGAGAATCGATCAAGCCCGAGGGTAATCAAATCGA
CGGGTGGCAAAAGTGATCAGAGCATAGTTCTAACCGGacataagaaaatt
gaaaaatattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004618-exon-sc0000047-1491911889:288424..288682 | TCONS_00004618-exon-sc0000047-1491911889:288424..288682 | Clytia hemisphaerica | exon |
| TCONS_00004618-exon-sc0000047-1510915933:288424..288682 | TCONS_00004618-exon-sc0000047-1510915933:288424..288682 | Clytia hemisphaerica | exon |
| TCONS_00004618-exon-sc0000047-1575043694:288424..288682 | TCONS_00004618-exon-sc0000047-1575043694:288424..288682 | Clytia hemisphaerica | exon |
| TCONS_00004618-exon-sc0000047-1491911889:289612..289717 | TCONS_00004618-exon-sc0000047-1491911889:289612..289717 | Clytia hemisphaerica | exon |
| TCONS_00004618-exon-sc0000047-1510915933:289612..289717 | TCONS_00004618-exon-sc0000047-1510915933:289612..289717 | Clytia hemisphaerica | exon |
| TCONS_00004618-exon-sc0000047-1575043694:289612..289717 | TCONS_00004618-exon-sc0000047-1575043694:289612..289717 | Clytia hemisphaerica | exon |
| TCONS_00004618-exon-sc0000047-1491911889:290294..290401 | TCONS_00004618-exon-sc0000047-1491911889:290294..290401 | Clytia hemisphaerica | exon |
| TCONS_00004618-exon-sc0000047-1510915933:290294..290401 | TCONS_00004618-exon-sc0000047-1510915933:290294..290401 | Clytia hemisphaerica | exon |
| TCONS_00004618-exon-sc0000047-1575043694:290294..290401 | TCONS_00004618-exon-sc0000047-1575043694:290294..290401 | Clytia hemisphaerica | exon |
| TCONS_00004618-exon-sc0000047-1491911889:290768..291532 | TCONS_00004618-exon-sc0000047-1491911889:290768..291532 | Clytia hemisphaerica | exon |
| TCONS_00004618-exon-sc0000047-1510915933:290768..291532 | TCONS_00004618-exon-sc0000047-1510915933:290768..291532 | Clytia hemisphaerica | exon |
| TCONS_00004618-exon-sc0000047-1575043694:290768..291532 | TCONS_00004618-exon-sc0000047-1575043694:290768..291532 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000047 | supercontig | sc0000047:288424..291532 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013032 | EGF-like_CS |
Blast
The following BLAST results are available for this feature:
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