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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004590 ID=TCONS_00004590|Name=TCONS_00004590|organism=Clytia hemisphaerica|type=transcript|length=1040bp
TGATATCAGATAGAATTAGTAACTTATCGTCAAGTGAAGAAATCTTCAAC
CGTGCAGCTCCTACCTACAACGAAGCCCTTCGAAATAGTGGCTACAAAGA
AACAGTAACTTTCAACAATAAAAAAGAACCGAGAAACCACCGCAGCAGAA
AACGAAATATCATATGGTTCAACCCCCCATTTAGTGCAAATGTTAAAACC
AATGTTGCAAAAAGATTTCTTTACTTTGTCgtaaaaaactttccaaaaaa
tcaCAGACTTCACAAACTTTTTAACagaaataatttcaaagttaGTTACA
GCTGTATGCCAAATGTTTCAAACATCATTTCCTCCCATAACAAAAAGATC
CTCAACTCAAACGAACCAGAACCAGAACCACTAAACGACAAACAATGCAA
CTGCAGAAGAAAAACTGACTGTCCATTAAACGGAAAATGTCTCCAAAAAG
AAGTCATTTATCAATGCAAAATCGAAGAGCCCGAAACAAACACAGAAAAG
TTTTATATCGGCTTAACAACAAACGCCTTCAAACAAAGATGGTACGGACA
TAAACACACCTTCAAATATGAAACCAAAAGAGCGTCAACAGAGTTATCCA
ACCACGTTTGGGACCTACAAATTAAAAATATACAGCCGAAATTGTCATGG
AAAATTATCGACCACGCCAAACCGTATGTTAATGGCTCAAAAAAATGCAA
CCTCTGTCTCACAGAAAAATTCCATATAATTACGTCAGAACTCGATCTCG
TTAACCAGAGATCTGAACTTATTTCTAAATGTCGTCATAACAACAAATTT
ATTCTAAAAAACTTCGAATCGGTCCCCCCGGacaaatcataaattttatt
ttcaatacctttttaatgctttcatcattgtttttattaccTAGTTTTAT
TGCACCAATTATCcagttttttaactttttacttcgaatttcagattttt
caatcATTATTGTACATATGATTAGTGTGAAAGCACGAAACTCAGAGTAA
TGTACTTtacttagtttttttaaatggaagataactttta Run BLAST on NCBI protein sequence of TCONS_00004590-protein >TCONS_00004590-protein ID=TCONS_00004590-protein|Name=TCONS_00004590-protein|organism=Clytia hemisphaerica|type=polypeptide|length=279bp
ISDRISNLSSSEEIFNRAAPTYNEALRNSGYKETVTFNNKKEPRNHRSRK
RNIIWFNPPFSANVKTNVAKRFLYFVVKNFPKNHRLHKLFNRNNFKVSYS
CMPNVSNIISSHNKKILNSNEPEPEPLNDKQCNCRRKTDCPLNGKCLQKE
VIYQCKIEEPETNTEKFYIGLTTNAFKQRWYGHKHTFKYETKRASTELSN
HVWDLQIKNIQPKLSWKIIDHAKPYVNGSKKCNLCLTEKFHIITSELDLV
NQRSELISKCRHNNKFILKNFESVPPDKS Run BLAST on NCBI transcript from alignment at sc0000045:452250..453289 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004590 ID=TCONS_00004590|Name=TCONS_00004590|organism=Clytia hemisphaerica|type=transcript|length=1040bp|location=Sequence derived from alignment at sc0000045:452250..453289 (Clytia hemisphaerica)
taaaagttatcttccatttaaaaaaactaagtaAAGTACATTACTCTGAG
TTTCGTGCTTTCACACTAATCATATGTACAATAATgattgaaaaatctga
aattcgaagtaaaaagttaaaaaactgGATAATTGGTGCAATAAAACTAg
gtaataaaaacaatgatgaaagcattaaaaaggtattgaaaataaaattt
atgatttgtCCGGGGGGACCGATTCGAAGTTTTTTAGAATAAATTTGTTG
TTATGACGACATTTAGAAATAAGTTCAGATCTCTGGTTAACGAGATCGAG
TTCTGACGTAATTATATGGAATTTTTCTGTGAGACAGAGGTTGCATTTTT
TTGAGCCATTAACATACGGTTTGGCGTGGTCGATAATTTTCCATGACAAT
TTCGGCTGTATATTTTTAATTTGTAGGTCCCAAACGTGGTTGGATAACTC
TGTTGACGCTCTTTTGGTTTCATATTTGAAGGTGTGTTTATGTCCGTACC
ATCTTTGTTTGAAGGCGTTTGTTGTTAAGCCGATATAAAACTTTTCTGTG
TTTGTTTCGGGCTCTTCGATTTTGCATTGATAAATGACTTCTTTTTGGAG
ACATTTTCCGTTTAATGGACAGTCAGTTTTTCTTCTGCAGTTGCATTGTT
TGTCGTTTAGTGGTTCTGGTTCTGGTTCGTTTGAGTTGAGGATCTTTTTG
TTATGGGAGGAAATGATGTTTGAAACATTTGGCATACAGCTGTAACtaac
tttgaaattatttctGTTAAAAAGTTTGTGAAGTCTGtgattttttggaa
agttttttacGACAAAGTAAAGAAATCTTTTTGCAACATTGGTTTTAACA
TTTGCACTAAATGGGGGGTTGAACCATATGATATTTCGTTTTCTGCTGCG
GTGGTTTCTCGGTTCTTTTTTATTGTTGAAAGTTACTGTTTCTTTGTAGC
CACTATTTCGAAGGGCTTCGTTGTAGGTAGGAGCTGCACGGTTGAAGATT
TCTTCACTTGACGATAAGTTACTAATTCTATCTGATATCA Coding sequence (CDS) from alignment at sc0000045:452250..453289 >TCONS_00004590 ID=TCONS_00004590|Name=TCONS_00004590|organism=Clytia hemisphaerica|type=CDS|length=840bp|location=Sequence derived from alignment at sc0000045:452250..453289 (Clytia hemisphaerica)
ttatgatttgtCCGGGGGGACCGATTCGAAGTTTTTTAGAATAAATTTGT
TGTTATGACGACATTTAGAAATAAGTTCAGATCTCTGGTTAACGAGATCG
AGTTCTGACGTAATTATATGGAATTTTTCTGTGAGACAGAGGTTGCATTT
TTTTGAGCCATTAACATACGGTTTGGCGTGGTCGATAATTTTCCATGACA
ATTTCGGCTGTATATTTTTAATTTGTAGGTCCCAAACGTGGTTGGATAAC
TCTGTTGACGCTCTTTTGGTTTCATATTTGAAGGTGTGTTTATGTCCGTA
CCATCTTTGTTTGAAGGCGTTTGTTGTTAAGCCGATATAAAACTTTTCTG
TGTTTGTTTCGGGCTCTTCGATTTTGCATTGATAAATGACTTCTTTTTGG
AGACATTTTCCGTTTAATGGACAGTCAGTTTTTCTTCTGCAGTTGCATTG
TTTGTCGTTTAGTGGTTCTGGTTCTGGTTCGTTTGAGTTGAGGATCTTTT
TGTTATGGGAGGAAATGATGTTTGAAACATTTGGCATACAGCTGTAACta
actttgaaattatttctGTTAAAAAGTTTGTGAAGTCTGtgattttttgg
aaagttttttacGACAAAGTAAAGAAATCTTTTTGCAACATTGGTTTTAA
CATTTGCACTAAATGGGGGGTTGAACCATATGATATTTCGTTTTCTGCTG
CGGTGGTTTCTCGGTTCTTTTTTATTGTTGAAAGTTACTGTTTCTTTGTA
GCCACTATTTCGAAGGGCTTCGTTGTAGGTAGGAGCTGCACGGTTGAAGA
TTTCTTCACTTGACGATAAGTTACTAATTCTATCTGATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004590-exon-sc0000045-1491911889:452250..453289 | TCONS_00004590-exon-sc0000045-1491911889:452250..453289 | Clytia hemisphaerica | exon |
| TCONS_00004590-exon-sc0000045-1510915933:452250..453289 | TCONS_00004590-exon-sc0000045-1510915933:452250..453289 | Clytia hemisphaerica | exon |
| TCONS_00004590-exon-sc0000045-1575043694:452250..453289 | TCONS_00004590-exon-sc0000045-1575043694:452250..453289 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000045 | supercontig | sc0000045:452250..453289 . |
Blast
The following BLAST results are available for this feature:
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