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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004558 ID=TCONS_00004558|Name=TCONS_00004558|organism=Clytia hemisphaerica|type=transcript|length=1364bp
TTAGGTAACTCAAATCACCTCCATTTGTGGTAAAACCAATCGTTCACAAG
TTAATTACCATCTAAGATTTAATGGGCTAATTATAACGGAAACCCATTTG
GTTGACAACACAATCGAAACCTAAAAAATTGGTCTTCGAAACTCATACGA
TGGAGAGTAGATAGTCTCTTATTTGGACACGCACAAACAACTCTTCACAC
TCCATCGTTCCAAATATCAAACAAGATCTCAAGNCTCTTATTTGGACACG
CACAAATAACTCTTCACACTCCATCGTTCTAAATATCAAACAAGATCTCA
AGATTCCTCATAAATAAACTGGTTACATAAGATGGCAGCCTTCAAAGACA
AACTTTGAAATAATAATGATGTATTGATTCATAATGTGAATTTAATTACA
GGGTTTTATAACTCAACAACTAATAAGCTCGGTATAAAACAACCtgattt
cacatttttcaaatcaTCTCTCACTCTTGATAAAGAAGAACACAGAACAA
CTTCaaacaagaagaaaataatTGTAAACTCAAAATGAAGGCTGCCATCT
TTCTCGCTTTAGTTGCTGCTGCATACTCCCTCGAAGTTGGAACCCAAACT
GGTACCACACCACCTGCTGTCCCATGCCCAGACTCCCTCTGCAAAGGAAA
AGCTGACGGCAACTTTGAATATTACTACTATGGTGCATACAACTCACACT
ACTTCCTCCAATGCTCAAACGGATTAGCTTCATGCCAAGCTTGCTGGCCA
TTGTCTTTGGAATTCAGCGAAGGATGCAACCAATGTTTGTACAACCGAAA
AGACGACTGTGTCACCACACAACCATGGCACCCAGCAACCACCTTCGCTT
GCCCAGACAAATGCCCAGGCCGTGGACCACACTTCAGTGGAAACATCAAA
GACGACCATGAACCACGACAATACGTCGCTTGCTTCCACGGACAAACTGT
CGGATGTATCGCTTGCCCATCAGGACTTTTGTTCAACGAAGAATGGAACG
CCTGCTTGTACCAAGGAAAATACAAGACCGAGCCAGAATCACCACCAAAA
CACTAAGAAGCTCCCATTCGTAaccaacaaaagaaaaaaacgaaaatttt
ccatcATTCTCACAGAAAATTAGTGTGATGATTTTTAACCATAATTTTTT
tgcattcaaaatatttttcagtctCATCATTTCTTCCTGATCGATCTGGA
TCgattttttaaacttatttGTAAACAATGTATTTGTAATATTTGATCAT
AATCTCTCCGAATAAAACTGATAATTTCTCTCTAAATACGCCTTTTTATT
AGTGTAGATATTGTTTCCCTTTAGCATCTTCTTcctggaaaaaattaaat
tgtctAAGAAAAAG Run BLAST on NCBI protein sequence of TCONS_00004558-protein >TCONS_00004558-protein ID=TCONS_00004558-protein|Name=TCONS_00004558-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
MKAAIFLALVAAAYSLEVGTQTGTTPPAVPCPDSLCKGKADGNFEYYYYG
AYNSHYFLQCSNGLASCQACWPLSLEFSEGCNQCLYNRKDDCVTTQPWHP
ATTFACPDKCPGRGPHFSGNIKDDHEPRQYVACFHGQTVGCIACPSGLLF
NEEWNACLYQGKYKTEPESPPKH Run BLAST on NCBI transcript from alignment at sc0000045:466744..468353- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004558 ID=TCONS_00004558|Name=TCONS_00004558|organism=Clytia hemisphaerica|type=transcript|length=1610bp|location=Sequence derived from alignment at sc0000045:466744..468353- (Clytia hemisphaerica)
TTAGGTAACTCAAATCACCTCCATTTGTGGTAAAACCAATCGTTCACAAG
TTAATTACCATCTAAGATTTAATGGGCTAATTATAACGGAAACCCATTTG
GTTGACAACACAATCGAAACCTAAAAAATTGGTCTTCGAAACTCATACGA
TGGAGAGTAGATAGTCTCTTATTTGGACACGCACAAACAACTCTTCACAC
TCCATCGTTCCAAATATCAAACAAGATCTCAAGNCTCTTATTTGGACACG
CACAAATAACTCTTCACACTCCATCGTTCTAAATATCAAACAAGATCTCA
AGATTCCTCATAAATAAACTGGTTACATAAGATGGCAGCCTTCAAAGACA
AACTTTGAAATAATAATGATGTATTGATTCATAATGTGAATTTAATTACA
GGGTTTTATAACTCAACAACTAATAAGCTCGGTATAAAACAACCTGATTT
CACATTTTTCAAATCATCTCTCACTCTTGATAAAGAAGAACACAGAACAA
CTTCAAACAAGAAGAAAATAATTGTAAACTCAAAATGAAGGCTGCCATCT
TTCTCGCTTTAGTTGCTGGTAAGTTTCAAATTTTTTCCATAATGCTTCTT
TCTTTCTACAAATGGTAAGGTAAGGCATTGAACTGCTCACTGCTCTAAGC
ATAATACAAGATTGAATTCGGCGACTCTAAGTTTAATTCAGAATCTTTGA
TTACTGATAAAGACGAGACGCCACAAGGCTGAGGCCTTGATAACTTCAAA
GAGGTTTGTGTGAATGTCTTAGACATAAGCTCAATTTTAATGTCAGTAAC
TTTCTTACTTTTAGCTGCATACTCCCTCGAAGTTGGAACCCAAACTGGTA
CCACACCACCTGCTGTCCCATGCCCAGACTCCCTCTGCAAAGGAAAAGCT
GACGGCAACTTTGAATATTACTACTATGGTGCATACAACTCACACTACTT
CCTCCAATGCTCAAACGGATTAGCTTCATGCCAAGCTTGCTGGCCATTGT
CTTTGGAATTCAGCGAAGGATGCAACCAATGTTTGTACAACCGAAAAGAC
GACTGTGTCACCACACAACCATGGCACCCAGCAACCACCTTCGCTTGCCC
AGACAAATGCCCAGGCCGTGGACCACACTTCAGTGGAAACATCAAAGACG
ACCATGAACCACGACAATACGTCGCTTGCTTCCACGGACAAACTGTCGGA
TGTATCGCTTGCCCATCAGGACTTTTGTTCAACGAAGAATGGAACGCCTG
CTTGTACCAAGGAAAATACAAGACCGAGCCAGAATCACCACCAAAACACT
AAGAAGCTCCCATTCGTAACCAACAAAAGAAAAAAACGAAAATTTTCCAT
CATTCTCACAGAAAATTAGTGTGATGATTTTTAACCATAATTTTTTTGCA
TTCAAAATATTTTTCAGTCTCATCATTTCTTCCTGATCGATCTGGATCGA
TTTTTTAAACTTATTTGTAAACAATGTATTTGTAATATTTGATCATAATC
TCTCCGAATAAAACTGATAATTTCTCTCTAAATACGCCTTTTTATTAGTG
TAGATATTGTTTCCCTTTAGCATCTTCTTCCTGGAAAAAATTAAATTGTC
TAAGAAAAAG Coding sequence (CDS) from alignment at sc0000045:466744..468353- >TCONS_00004558 ID=TCONS_00004558|Name=TCONS_00004558|organism=Clytia hemisphaerica|type=CDS|length=1044bp|location=Sequence derived from alignment at sc0000045:466744..468353- (Clytia hemisphaerica)
CTGCATACTCCCTCGAAGTTGGAACCCAAACTGGTACCACACCACCTGCT
GTCCCATGCCCAGACTCCCTCTGCAAAGGAAAAGCTGACGGCAACTTTGA
ATATTACTACTATGGTGCATACAACTCACACTACTTCCTCCAATGCTCAA
ACGGATTAGCTTCATGCCAAGCTTGCTGGCCATTGTCTTTGGAATTCAGC
GAAGGATGCAACCAATGTTTGTACAACCGAAAAGACGACTGTGTCACCAC
ACAACCATGGCACCCAGCAACCACCTTCGCTTGCCCAGACAAATGCCCAG
GCCGTGGACCACACTTCAGTGGAAACATCAAAGACGACCATGAACCACGA
CAATACGTCGCTTGCTTCCACGGACAAACTGTCGGATGTATCGCTTGCCC
ATCAGGACTTTTGTTCAACGAAGAATGGAACGCCTGCTTGTACCAAGGAA
AATACAAGACCGAGCCAGAATCACCACCAAAACACTAAATGAAGGCTGCC
ATCTTTCTCGCTTTAGTTGCTGCTGCATACTCCCTCGAAGTTGGAACCCA
AACTGGTACCACACCACCTGCTGTCCCATGCCCAGACTCCCTCTGCAAAG
GAAAAGCTGACGGCAACTTTGAATATTACTACTATGGTGCATACAACTCA
CACTACTTCCTCCAATGCTCAAACGGATTAGCTTCATGCCAAGCTTGCTG
GCCATTGTCTTTGGAATTCAGCGAAGGATGCAACCAATGTTTGTACAACC
GAAAAGACGACTGTGTCACCACACAACCATGGCACCCAGCAACCACCTTC
GCTTGCCCAGACAAATGCCCAGGCCGTGGACCACACTTCAGTGGAAACAT
CAAAGACGACCATGAACCACGACAATACGTCGCTTGCTTCCACGGACAAA
CTGTCGGATGTATCGCTTGCCCATCAGGACTTTTGTTCAACGAAGAATGG
AACGCCTGCTTGTACCAAGGAAAATACAAGACCGAGCCAGAATCACCACC
AAAACACTAAATGAAGGCTGCCATCTTTCTCGCTTTAGTTGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004558-exon-sc0000045-1575043694:467786..468353 | TCONS_00004558-exon-sc0000045-1575043694:467786..468353 | Clytia hemisphaerica | exon |
| TCONS_00004558-exon-sc0000045-1575043694:466744..467539 | TCONS_00004558-exon-sc0000045-1575043694:466744..467539 | Clytia hemisphaerica | exon |
| TCONS_00004558-exon-sc0000045-1510915933:467786..468353 | TCONS_00004558-exon-sc0000045-1510915933:467786..468353 | Clytia hemisphaerica | exon |
| TCONS_00004558-exon-sc0000045-1510915933:466744..467539 | TCONS_00004558-exon-sc0000045-1510915933:466744..467539 | Clytia hemisphaerica | exon |
| TCONS_00004558-exon-sc0000045-1491911889:467786..468353 | TCONS_00004558-exon-sc0000045-1491911889:467786..468353 | Clytia hemisphaerica | exon |
| TCONS_00004558-exon-sc0000045-1491911889:466744..467539 | TCONS_00004558-exon-sc0000045-1491911889:466744..467539 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000045 | supercontig | sc0000045:466744..468353 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006030 |
chitin metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
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