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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004556 ID=TCONS_00004556|Name=TCONS_00004556|organism=Clytia hemisphaerica|type=transcript|length=3668bp
gaaaaactgAAATCATGGGGCAAAGCTCCGTTTAACTTTATGAGAGTACC
TGAGCGGAAAGCTTTCTAGCATGAAAGTAATAAAGTGTGCTGTGACGATG
TTTTAATCAAcaattttgtttcaataaatcGCAGTGCGAGGCAGGAAAGG
GCAGCAAAAAATCAACTCACGTCCttttaaatgttaaaaagaccaagcaa
aatattattaCTTCTCATAGTAAAAATTTGCTTTTcacatcaaaatattt
aaagggTTATCGAAGCAAAAGCAAAAGGTGACAAGTATCTCTGGTATAAA
TACGTTGCTTTCAAAGTACTTTGTAACTAAGGTTTTAAAAGCTGTGCTGT
AAGTTTTGAAAAGGATTTCTTTGCTCCTGagtaaaagctttttgaaattt
ctactTTTAATTGGATTGTCTGATTATTTTCATCCAACTTTCATCAAAAT
GCGGGAAGTAGTATCAATTCATATCGGACAAGCTGGTTGCCAAATAGGGA
ACTCGTGTTGGGAATTGTATTGTTTGGAACACGGGATTTCCCCTGATGGA
TTGGTTCCTGATGGTAATGAAATCAATGGTGCCTGCAAATCCTTCTTCTC
GGAAACAGGAGGCGGGAAATTCGTTCCCAGAGCTGTCTTTGCTGACTTGG
AGCCCACTGTTATTGACGAGACGCGAACGGGCAAGCACAAAGATCTCTTT
CATCCTGACCAATTGATCAATGGAAAAGAGGATGCAGCAAACAATTATGC
TCGTGGACATTACACCGTTGGGCGTGAGATTATTGACGAAGTGTTGGAAG
CCATCCGAAAGATTACACAAAACTGTTACAGTCTTCAAGGATTCATTGTT
TACCATTCCCTTGGAGGAGGAACCGGCTCCGGACTCACATCCCTCCTTGC
CGAAAGAATTTCTGCAGAACATGGCAAGAAATGCAAACTGGCTTTCACCG
TTCATCCGGCACCTCAGGTCTCAACTGCCGTCGTAGAACCATACAATACA
GTCTTGACAAGTCATACTGGTTTGGAGCATCAAGATTGTGCTTTTATGGT
TGACAACGAGGCTATCTTCGAATTATGCCGGACAAACCTTAATATCGAAC
GTCCGACATATGTTAATTTGAACCGTTTAATTGGACAGGTGGTTTCAAGT
ATTACAGCCTCTCTTAGATTCGAAGGTTCCTTGAATGTTGATCTGAATGA
ATTCCAAACTAACTTGGTACCATACCCAAGAATTCATTTTCCGGTACCGG
CATTTGCACCTGTCGTTTCCGTAGAAAAATCCCACCATGAAAAACACTCG
GTAACCGAACTTACTAATGCTTGTTTCGAGTCGAAATCACAAATGACAAA
ATTCGACCCACGTGGAGGGAAATACATGGCATGTTGTTTGTTATACCGTG
GAAATGTCCAGCCTAAGGACGTCAATTCTGCAATCTCAACCGTCAAGGCT
AAACGTACAATCGAATTTGTCGATTGGTGTCCAACTGGGTTTAAAGTTGG
TATCAACCAATTCGCCCCGGCGACCGTACCAAACGGAGACTTGGCAAAGC
TTGACAGAGCTGTTTGTATGCTATCAAACACGACTGCTATTGGTGAAGTA
TGGTCACGTGTTGATCATAAATTCGATTTGATGTACCGCAAACGTGCTTT
TGTGCATTGGTATGTAGGAGAAGGTATGGAGGAAGGAGAATTTGCGGAAG
CCAGGGAGAATTTGGCAGCCCTGGAAAAAGATTACGAAGAAGTAGGAATG
GATTCTAATGATATGATAGACGATGAGGATGCTGATGAGTATTGAATTTC
GGACAGGTGAACAAATttcggaaatttgaaaatatttcggaCAGGTGAAC
AAAATTTGGACAAGAAAATATCCATCAGACATATCGATTATTTGGATACT
ACGTGTTTGATGACTTATATTTAATTAAAGTTTGCTGATTATTTTTGACA
GCATTTTTAcgaaattttttgaccaaaattttatttaaattataTATACA
GAATTTAGATTattaaaatgaaatataaaCTATAAATAAATGCAATTAGA
CTTAAAAAAGTAGATTAAAGTGTTTTAGTGCTGATTTAAATAATTTGATT
TATATTATTTACAGTGTGACATCATCGCATAATAATTAAAGGTCTAAGCT
TTTCGTCCAATATACATGAAAATTTCTACAGCAAGCAACGTCCATCCAAT
GTTCATGACATAACACCAAAATAACGTTTTACGAACGCCGAAACAAGGTT
CTTGTACCCCTTTGCAAACCTCACGGTGCATTAAGTTTGAATCAAGCCTA
CTAATTGGTAATGTTCAGTTAATTCTTGTATCGTTTATAATTACTTTTTA
TTCTTCACTTTAATGTTTAGCTGGAAGTGAAAGAAGTAAAATTATGACAT
AATATTCCATTAATATGTGCCTTCCACCATCCGACACCCAAGCAGAAGAA
ACATTGCCCAAGTTTGAGTAGTTTCATAGCGGCCCATAGACTTAGGAaat
aaattactcaaaataaaaaaaatggaaaaaattagtATAGAAAACGAGTC
AAGACGAATTTTTTAGTAATTTCCTGTTGAATTAGAAACACTATATGTGT
ATGTTAGATTACCAAATCTGAATGCAGTATTAAAACATCAAGAGCTTGGA
GAACGCACATGCatgtaaaattttactttagaccttaccgaaaatcgttc
gtaaggctgtcttttgggaatttccccgatATTATGTAGAATTTTTGtta
cgtgacttttccttccgttcatacataaggccttaaaacactacgtaagc
ttagggaaattccccaccctTCAAGGTCTTACGTAacattttacgtacat
gtgaaaaaagcttaagtTGTAAAGTCTGGCTCTAGTTTTTGGGGAAAGTT
TAGTCTGGTTACAAATAAAATAGAAGACTCTTACTTTGGTTGTATACCAC
TTTCAACCTATCACCTTTCAAATGAGTTGGCATGAAGATGACGTCATCGN
AGTAAAGTCTGGCCCTAGTTTTTGGGGAAAGTTTAGTCTGGTTATAAATA
AAATAGAAGACTCTTACTTTGGTTGTATACCACTTTCAACCTATCACCTT
TCAAATGAGTTGGCAtgaagatgacgtcatcgatgaagAAGGGCGTGGTT
CCACCGAATTTGAAAGTTCCGACAGATGGGGTGGAATAGCTTCCAGAAGT
AGAACTGAATTCCTGGTCATTCAGGAAGCAAGAAAAGGCAGGAGTGGAGC
CATGGTCAAAAGTGATTCCAATAAAATTCCATTCTGTCCAAAGGCTTTCT
TTATATGAATCATATCTGCACTTGTTCCATGCAGAATTTGTCTCGTATCC
CAAGGAAATTTCAGAGGGATGAAAAAACATGTAAACTCCATACTGACTTG
CCGACAAACCTTGATCAATGACTTTAAATATTCCAGTGGCGTAGTCAGCA
TCAAGGGGTTTTAACATACGCAACCAAAACGCAAAAGTGAAACCATTGGG
ACAAGGATGTTGTCTgaagttttaaacaaatgtatTTGTAAAAAGCAAGA
AAAGTCTCAGTTTTCTCAACActaattttgaaagtggtatgGAAGATAAC
GTTCGAATTTGAAAAGACTATTCCTTAaaacaatcgaatgttttctgCCA
CTATGGCAGAGGCAGGGG Run BLAST on NCBI protein sequence of TCONS_00004556-protein >TCONS_00004556-protein ID=TCONS_00004556-protein|Name=TCONS_00004556-protein|organism=Clytia hemisphaerica|type=polypeptide|length=448bp
MREVVSIHIGQAGCQIGNSCWELYCLEHGISPDGLVPDGNEINGACKSFF
SETGGGKFVPRAVFADLEPTVIDETRTGKHKDLFHPDQLINGKEDAANNY
ARGHYTVGREIIDEVLEAIRKITQNCYSLQGFIVYHSLGGGTGSGLTSLL
AERISAEHGKKCKLAFTVHPAPQVSTAVVEPYNTVLTSHTGLEHQDCAFM
VDNEAIFELCRTNLNIERPTYVNLNRLIGQVVSSITASLRFEGSLNVDLN
EFQTNLVPYPRIHFPVPAFAPVVSVEKSHHEKHSVTELTNACFESKSQMT
KFDPRGGKYMACCLLYRGNVQPKDVNSAISTVKAKRTIEFVDWCPTGFKV
GINQFAPATVPNGDLAKLDRAVCMLSNTTAIGEVWSRVDHKFDLMYRKRA
FVHWYVGEGMEEGEFAEARENLAALEKDYEEVGMDSNDMIDDEDADEY Run BLAST on NCBI transcript from alignment at sc0000045:454644..459728- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004556 ID=TCONS_00004556|Name=TCONS_00004556|organism=Clytia hemisphaerica|type=transcript|length=5085bp|location=Sequence derived from alignment at sc0000045:454644..459728- (Clytia hemisphaerica)
GAAAAACTGAAATCATGGGGCAAAGCTCCGTTTAACTTTATGAGAGTACC
TGAGCGGAAAGCTTTCTAGCATGAAAGTAATAAAGTGTGCTGTGACGATG
TTTTAATCAACAATTTTGTTTCAATAAATCGCAGTGCGAGGCAGGAAAGG
GCAGCAAAAAATCAACTCACGTCCTTTTAAATGTTAAAAAGACCAAGCAA
AATATTATTACTTCTCATAGTAAAAATTTGCTTTTCACATCAAAATATTT
AAAGGGTTATCGAAGCAAAAGCAAAAGGTGACAAGTATCTCTGGTATAAA
TACGTTGCTTTCAAAGTACTTTGTAACTAAGGTTTTAAAAGCTGTGCTGT
AAGTTTTGAAAAGGATTTCTTTGCTCCTGAGTAAAAGCTTTTTGAAATTT
CTACTTTTAATTGGATTGTCTGATTATTTTCATCCAACTTTCATCAAAAT
GGTAAGTTTGTTTTCACTTTCATTAGTCTCAATTTTTCACCCTGAACGTC
GGTTTTTTGTCATGTGCAAGACTAACTACTAACTTAACAAGAAATCGTTA
ATTATGAAACGGACAGTCCTGATTACACATGATTCATTGCAATTATGTTT
ATGTGATGGAGTCTAATGCCCAGCCCCTTTTTTATTCGAACAAAGAATCG
GAGCCTCGTCAAAATGGCCNGTCCTAATAAAGTCCAGGGGTTGGAAAATT
TTCGAAAAATTAACAAGCGGGGGGGGGCGTTTATTTGGAACCTAAGAGTA
GGAATTTTCTTTTATTTTGCTAAATTGACAATTGTTTTTATTCTTCCAGC
GGGAAGTAGTATCAATTCATATCGGACAAGCTGGTTGCCAAATAGGGAAC
TCGTGTTGGGAATTGTATTGTTTGGAACACGGGATTTCCCCTGATGGATT
GGTTCCTGATGGTAATGAAATCAATGGTGCCTGCAAATCCTTCTTCTCGG
AAACAGGAGGCGGGAAATTCGTTCCCAGAGCTGTCTTTGCTGACTTGGAG
CCCACTGTTATTGGTAAGAATTGCTGATCAAAATTATTGGCAATGAATAG
TGCTTCGTCATGATTATTACTTTTCTCATTTGACCGAAATTCAATCCCAC
AATCCTTTTCGTCTTAATTCAAAAGTCGTGAAAGTTATTACTTGTTCTTT
GTAATTGAGTGTAATTTGCGTGCAAGCGTAATAAACGCAAAGGCTGATGG
GATTGAATTTCAGTCAAACTTAAAAATCAATGTCTATTTTTAGATTCGCG
ACGGTATGCTATTAATCAATACTATTCTCGTCTTGTATGTTAAACTTTAC
AATCCTCAATCTGTCATCTCAATCGATTTCGACGACGTAGTTTTTCTCGG
AAGACTGCTTTTTGCTAATGCTCTACTTTTTGAAATAGCATATCCGCAAC
ATGCCCTAATAGTTCATCGATCGGCACACAAATAATTTTTGAACATTATT
TAAGATTCTCTTTCATAAATGATTCTCTCATTCTAGACGAGACGCGAACG
GGCAAGCACAAAGATCTCTTTCATCCTGACCAATTGATCAATGGAAAAGA
GGATGCAGCAAACAATTNCATTTTTGAACATTATTTAAGATTCTCTTTCA
TAAATGATTTTCTCATTCTAGACGAGACGCGAACGGGCAAGCACAAAGAT
CTCTTTCATCCTGACCAATTGATCAATGGAAAAGAGGATGCAGCAAACAA
TTATGCTCGTGGACATTACACCGTTGGTATGTATTATTTCCTAACCGATT
CAGATTTGCAATATTTCATGCCGTAACAAATAGTCAAACAAACGTAAGGA
GTTCAAATCCCATTCCAAAGTCACATATTTAAAGTCCTTGATAATCAACT
CTTCCCTCCAGAACCTTCCTGAAGAATCTAACCATTTAACGCAACTTGCA
TATTTTTGAATGACCCCTGTATCAGACCAAATCACTTCAGAAAAAAATGC
TGACTCTAACTTTCCATCATTGCAATAGGGCGTGAGATTATTGACGAAGT
GTTGGAAGCCATCCGAAAGATTACACAAAACTGTTACAGTCTTCAAGGAT
TCATTGTTTACCATTCCCTTGGAGGAGGAACCGGCTCCGGACTCACATCC
CTCCTTGCCGAAAGAATTTCTGCAGAACATGGCAAGAAATGCAAACTGGC
TTTCACCGTTCATCCGGCACCTCAGGTCTCAACTGCCGTCGTAGAACCAT
ACAATACAGTCTTGACAAGTCATACTGGTTTGGAGCATCAAGATTGTGCT
TTTATGGTTGACAACGAGGCTATCTTCGAATTATGCCGGACAAACCTTAA
TATCGAACGTCCGACATATGTTAATTTGAACCGTTTAATTGGACAGGTGG
TTTCAAGTATTACAGCCTCTCTTAGATTCGAAGGTTCCTTGAATGTTGAT
CTGAATGAATTCCAAACTAACTTGGTACCATACCCAAGAATTCATTTTCC
GGTACCGGCATTTGCACCTGTCGTTTCCGTAGAAAAATCCCACCATGAAA
AACACTCGGTAACCGAACTTACTAATGCTTGTTTCGAGTCGAAATCACAA
ATGACAAAATTCGACCCACGTGGAGGGAAATACATGGCATGTTGTTTGTT
ATACCGTGGAAATGTCCAGCCTAAGGACGTCAATTCTGCAATCTCAACCG
TCAAGGCTAAACGTACAATCGAATTTGTCGATTGGTGTCCAACTGGGTTT
AAAGTTGGTATCAACCAATTCGCCCCGGCGACCGTACCAAACGGAGACTT
GGCAAAGCTTGACAGAGCTGTTTGTATGCTATCAAACACGACTGCTATTG
GTGAAGTATGGTCACGTGTTGATCATAAATTCGATTTGATGTACCGCAAA
CGTGCTTTTGTGCATTGGTATGTAGGAGAAGGTAAGTGCTTGTTTCTTTT
ATCCCTTACTAGAAATATTGCTTTGTACCCCGAAATAAAATTTATTGATT
GCTAATCTCGGCACCCCTTTGCTTTTTGACACCCTCAAATTTGCAGTTAT
CAGCCAGAAAGAGTGAAAATATCTAAAGATATACTCACTTATCCTTTTAA
ATTCCTTCTTTTCGTCCAATCAAATTCTCTTCTTCTTTAGGTATGGAGGA
AGGAGAATTTGCGGAAGCCAGGGAGAATTTGGCAGCCCTGGAAAAAGATT
ACGAAGAAGTAGGAATGGATTCTAATGATATGATAGACGATGAGGATGCT
GATGAGTATTGAATTTCGGACAGGTGAACAAATTTCGGAAATTTGAAAAT
ATTTCGGACAGGTGAACAAAATTTGGACAAGAAAATATCCATCAGACATA
TCGATTATTTGGATACTACGTGTTTGATGACTTATATTTAATTAAAGTTT
GCTGATTATTTTTGACAGCATTTTTACGAAATTTTTTGACCAAAATTTTA
TTTAAATTATATATACAGAATTTAGATTATTAAAATGAAATATAAACTAT
AAATAAATGCAATTAGACTTAAAAAAGTAGATTAAAGTGTTTTAGTGCTG
ATTTAAATAATTTGATTTATATTATTTACAGTGTGACATCATCGCATAAT
AATTAAAGGTCTAAGCTTTTCGTCCAATATACATGAAAATTTCTACAGCA
AGCAACGTCCATCCAATGTTCATGACATAACACCAAAATAACGTTTTACG
AACGCCGAAACAAGGTTCTTGTACCCCTTTGCAAACCTCACGGTGCATTA
AGTTTGAATCAAGCCTACTAATTGGTAATGTTCAGTTAATTCTTGTATCG
TTTATAATTACTTTTTATTCTTCACTTTAATGTTTAGCTGGAAGTGAAAG
AAGTAAAATTATGACATAATATTCCATTAATATGTGCCTTCCACCATCCG
ACACCCAAGCAGAAGAAACATTGCCCAAGTTTGAGTAGTTTCATAGCGGC
CCATAGACTTAGGAAATAAATTACTCAAAATAAAAAAAATGGAAAAAATT
AGTATAGAAAACGAGTCAAGACGAATTTTTTAGTAATTTCCTGTTGAATT
AGAAACACTATATGTGTATGTTAGATTACCAAATCTGAATGCAGTATTAA
AACATCAAGAGCTTGGAGAACGCACATGCATGTAAAATTTTACTTTAGAC
CTTACCGAAAATCGTTCGTAAGGCTGTCTTTTGGGAATTTCCCCGATATT
ATGTAGAATTTTTGTTACGTGACTTTTCCTTCCGTTCATACATAAGGCCT
TAAAACACTACGTAAGCTTAGGGAAATTCCCCACCCTTCAAGGTCTTACG
TAACATTTTACGTACATGTGAAAAAAGCTTAAGTTGTAAAGTCTGGCTCT
AGTTTTTGGGGAAAGTTTAGTCTGGTTACAAATAAAATAGAAGACTCTTA
CTTTGGTTGTATACCACTTTCAACCTATCACCTTTCAAATGAGTTGGCAT
GAAGATGACGTCATCGNAGTAAAGTCTGGCCCTAGTTTTTGGGGAAAGTT
TAGTCTGGTTATAAATAAAATAGAAGACTCTTACTTTGGTTGTATACCAC
TTTCAACCTATCACCTTTCAAATGAGTTGGCATGAAGATGACGTCATCGA
TGAAGAAGGGCGTGGTTCCACCGAATTTGAAAGTTCCGACAGATGGGGTG
GAATAGCTTCCAGAAGTAGAACTGAATTCCTGGTCATTCAGGAAGCAAGA
AAAGGCAGGAGTGGAGCCATGGTCAAAAGTGATTCCAATAAAATTCCATT
CTGTCCAAAGGCTTTCTTTATATGAATCATATCTGCACTTGTTCCATGCA
GAATTTGTCTCGTATCCCAAGGAAATTTCAGAGGGATGAAAAAACATGTA
AACTCCATACTGACTTGCCGACAAACCTTGATCAATGACTTTAAATATTC
CAGTGGCGTAGTCAGCATCAAGGGGTTTTAACATACGCAACCAAAACGCA
AAAGTGAAACCATTGGGACAAGGATGTTGTCTGAAGTTTTAAACAAATGT
ATTTGTAAAAAGCAAGAAAAGTCTCAGTTTTCTCAACACTAATTTTGAAA
GTGGTATGGAAGATAACGTTCGAATTTGAAAAGACTATTCCTTAAAACAA
TCGAATGTTTTCTGCCACTATGGCAGAGGCAGGGG Coding sequence (CDS) from alignment at sc0000045:454644..459728- >TCONS_00004556 ID=TCONS_00004556|Name=TCONS_00004556|organism=Clytia hemisphaerica|type=CDS|length=6735bp|location=Sequence derived from alignment at sc0000045:454644..459728- (Clytia hemisphaerica)
GTATGGAGGAAGGAGAATTTGCGGAAGCCAGGGAGAATTTGGCAGCCCTG
GAAAAAGATTACGAAGAAGTAGGAATGGATTCTAATGATATGATAGACGA
TGAGGATGCTGATGAGTATTGAGGCGTGAGATTATTGACGAAGTGTTGGA
AGCCATCCGAAAGATTACACAAAACTGTTACAGTCTTCAAGGATTCATTG
TTTACCATTCCCTTGGAGGAGGAACCGGCTCCGGACTCACATCCCTCCTT
GCCGAAAGAATTTCTGCAGAACATGGCAAGAAATGCAAACTGGCTTTCAC
CGTTCATCCGGCACCTCAGGTCTCAACTGCCGTCGTAGAACCATACAATA
CAGTCTTGACAAGTCATACTGGTTTGGAGCATCAAGATTGTGCTTTTATG
GTTGACAACGAGGCTATCTTCGAATTATGCCGGACAAACCTTAATATCGA
ACGTCCGACATATGTTAATTTGAACCGTTTAATTGGACAGGTGGTTTCAA
GTATTACAGCCTCTCTTAGATTCGAAGGTTCCTTGAATGTTGATCTGAAT
GAATTCCAAACTAACTTGGTACCATACCCAAGAATTCATTTTCCGGTACC
GGCATTTGCACCTGTCGTTTCCGTAGAAAAATCCCACCATGAAAAACACT
CGGTAACCGAACTTACTAATGCTTGTTTCGAGTCGAAATCACAAATGACA
AAATTCGACCCACGTGGAGGGAAATACATGGCATGTTGTTTGTTATACCG
TGGAAATGTCCAGCCTAAGGACGTCAATTCTGCAATCTCAACCGTCAAGG
CTAAACGTACAATCGAATTTGTCGATTGGTGTCCAACTGGGTTTAAAGTT
GGTATCAACCAATTCGCCCCGGCGACCGTACCAAACGGAGACTTGGCAAA
GCTTGACAGAGCTGTTTGTATGCTATCAAACACGACTGCTATTGGTGAAG
TATGGTCACGTGTTGATCATAAATTCGATTTGATGTACCGCAAACGTGCT
TTTGTGCATTGGTATGTAGGAGAAGACGAGACGCGAACGGGCAAGCACAA
AGATCTCTTTCATCCTGACCAATTGATCAATGGAAAAGAGGATGCAGCAA
ACAATTATGCTCGTGGACATTACACCGTTGCGGGAAGTAGTATCAATTCA
TATCGGACAAGCTGGTTGCCAAATAGGGAACTCGTGTTGGGAATTGTATT
GTTTGGAACACGGGATTTCCCCTGATGGATTGGTTCCTGATGGTAATGAA
ATCAATGGTGCCTGCAAATCCTTCTTCTCGGAAACAGGAGGCGGGAAATT
CGTTCCCAGAGCTGTCTTTGCTGACTTGGAGCCCACTGTTATTGATGGTA
TGGAGGAAGGAGAATTTGCGGAAGCCAGGGAGAATTTGGCAGCCCTGGAA
AAAGATTACGAAGAAGTAGGAATGGATTCTAATGATATGATAGACGATGA
GGATGCTGATGAGTATTGAGGCGTGAGATTATTGACGAAGTGTTGGAAGC
CATCCGAAAGATTACACAAAACTGTTACAGTCTTCAAGGATTCATTGTTT
ACCATTCCCTTGGAGGAGGAACCGGCTCCGGACTCACATCCCTCCTTGCC
GAAAGAATTTCTGCAGAACATGGCAAGAAATGCAAACTGGCTTTCACCGT
TCATCCGGCACCTCAGGTCTCAACTGCCGTCGTAGAACCATACAATACAG
TCTTGACAAGTCATACTGGTTTGGAGCATCAAGATTGTGCTTTTATGGTT
GACAACGAGGCTATCTTCGAATTATGCCGGACAAACCTTAATATCGAACG
TCCGACATATGTTAATTTGAACCGTTTAATTGGACAGGTGGTTTCAAGTA
TTACAGCCTCTCTTAGATTCGAAGGTTCCTTGAATGTTGATCTGAATGAA
TTCCAAACTAACTTGGTACCATACCCAAGAATTCATTTTCCGGTACCGGC
ATTTGCACCTGTCGTTTCCGTAGAAAAATCCCACCATGAAAAACACTCGG
TAACCGAACTTACTAATGCTTGTTTCGAGTCGAAATCACAAATGACAAAA
TTCGACCCACGTGGAGGGAAATACATGGCATGTTGTTTGTTATACCGTGG
AAATGTCCAGCCTAAGGACGTCAATTCTGCAATCTCAACCGTCAAGGCTA
AACGTACAATCGAATTTGTCGATTGGTGTCCAACTGGGTTTAAAGTTGGT
ATCAACCAATTCGCCCCGGCGACCGTACCAAACGGAGACTTGGCAAAGCT
TGACAGAGCTGTTTGTATGCTATCAAACACGACTGCTATTGGTGAAGTAT
GGTCACGTGTTGATCATAAATTCGATTTGATGTACCGCAAACGTGCTTTT
GTGCATTGGTATGTAGGAGAAGACGAGACGCGAACGGGCAAGCACAAAGA
TCTCTTTCATCCTGACCAATTGATCAATGGAAAAGAGGATGCAGCAAACA
ATTATGCTCGTGGACATTACACCGTTGCGGGAAGTAGTATCAATTCATAT
CGGACAAGCTGGTTGCCAAATAGGGAACTCGTGTTGGGAATTGTATTGTT
TGGAACACGGGATTTCCCCTGATGGATTGGTTCCTGATGGTAATGAAATC
AATGGTGCCTGCAAATCCTTCTTCTCGGAAACAGGAGGCGGGAAATTCGT
TCCCAGAGCTGTCTTTGCTGACTTGGAGCCCACTGTTATTGATGGTATGG
AGGAAGGAGAATTTGCGGAAGCCAGGGAGAATTTGGCAGCCCTGGAAAAA
GATTACGAAGAAGTAGGAATGGATTCTAATGATATGATAGACGATGAGGA
TGCTGATGAGTATTGAGGCGTGAGATTATTGACGAAGTGTTGGAAGCCAT
CCGAAAGATTACACAAAACTGTTACAGTCTTCAAGGATTCATTGTTTACC
ATTCCCTTGGAGGAGGAACCGGCTCCGGACTCACATCCCTCCTTGCCGAA
AGAATTTCTGCAGAACATGGCAAGAAATGCAAACTGGCTTTCACCGTTCA
TCCGGCACCTCAGGTCTCAACTGCCGTCGTAGAACCATACAATACAGTCT
TGACAAGTCATACTGGTTTGGAGCATCAAGATTGTGCTTTTATGGTTGAC
AACGAGGCTATCTTCGAATTATGCCGGACAAACCTTAATATCGAACGTCC
GACATATGTTAATTTGAACCGTTTAATTGGACAGGTGGTTTCAAGTATTA
CAGCCTCTCTTAGATTCGAAGGTTCCTTGAATGTTGATCTGAATGAATTC
CAAACTAACTTGGTACCATACCCAAGAATTCATTTTCCGGTACCGGCATT
TGCACCTGTCGTTTCCGTAGAAAAATCCCACCATGAAAAACACTCGGTAA
CCGAACTTACTAATGCTTGTTTCGAGTCGAAATCACAAATGACAAAATTC
GACCCACGTGGAGGGAAATACATGGCATGTTGTTTGTTATACCGTGGAAA
TGTCCAGCCTAAGGACGTCAATTCTGCAATCTCAACCGTCAAGGCTAAAC
GTACAATCGAATTTGTCGATTGGTGTCCAACTGGGTTTAAAGTTGGTATC
AACCAATTCGCCCCGGCGACCGTACCAAACGGAGACTTGGCAAAGCTTGA
CAGAGCTGTTTGTATGCTATCAAACACGACTGCTATTGGTGAAGTATGGT
CACGTGTTGATCATAAATTCGATTTGATGTACCGCAAACGTGCTTTTGTG
CATTGGTATGTAGGAGAAGACGAGACGCGAACGGGCAAGCACAAAGATCT
CTTTCATCCTGACCAATTGATCAATGGAAAAGAGGATGCAGCAAACAATT
ATGCTCGTGGACATTACACCGTTGCGGGAAGTAGTATCAATTCATATCGG
ACAAGCTGGTTGCCAAATAGGGAACTCGTGTTGGGAATTGTATTGTTTGG
AACACGGGATTTCCCCTGATGGATTGGTTCCTGATGGTAATGAAATCAAT
GGTGCCTGCAAATCCTTCTTCTCGGAAACAGGAGGCGGGAAATTCGTTCC
CAGAGCTGTCTTTGCTGACTTGGAGCCCACTGTTATTGATGGTATGGAGG
AAGGAGAATTTGCGGAAGCCAGGGAGAATTTGGCAGCCCTGGAAAAAGAT
TACGAAGAAGTAGGAATGGATTCTAATGATATGATAGACGATGAGGATGC
TGATGAGTATTGAGGCGTGAGATTATTGACGAAGTGTTGGAAGCCATCCG
AAAGATTACACAAAACTGTTACAGTCTTCAAGGATTCATTGTTTACCATT
CCCTTGGAGGAGGAACCGGCTCCGGACTCACATCCCTCCTTGCCGAAAGA
ATTTCTGCAGAACATGGCAAGAAATGCAAACTGGCTTTCACCGTTCATCC
GGCACCTCAGGTCTCAACTGCCGTCGTAGAACCATACAATACAGTCTTGA
CAAGTCATACTGGTTTGGAGCATCAAGATTGTGCTTTTATGGTTGACAAC
GAGGCTATCTTCGAATTATGCCGGACAAACCTTAATATCGAACGTCCGAC
ATATGTTAATTTGAACCGTTTAATTGGACAGGTGGTTTCAAGTATTACAG
CCTCTCTTAGATTCGAAGGTTCCTTGAATGTTGATCTGAATGAATTCCAA
ACTAACTTGGTACCATACCCAAGAATTCATTTTCCGGTACCGGCATTTGC
ACCTGTCGTTTCCGTAGAAAAATCCCACCATGAAAAACACTCGGTAACCG
AACTTACTAATGCTTGTTTCGAGTCGAAATCACAAATGACAAAATTCGAC
CCACGTGGAGGGAAATACATGGCATGTTGTTTGTTATACCGTGGAAATGT
CCAGCCTAAGGACGTCAATTCTGCAATCTCAACCGTCAAGGCTAAACGTA
CAATCGAATTTGTCGATTGGTGTCCAACTGGGTTTAAAGTTGGTATCAAC
CAATTCGCCCCGGCGACCGTACCAAACGGAGACTTGGCAAAGCTTGACAG
AGCTGTTTGTATGCTATCAAACACGACTGCTATTGGTGAAGTATGGTCAC
GTGTTGATCATAAATTCGATTTGATGTACCGCAAACGTGCTTTTGTGCAT
TGGTATGTAGGAGAAGACGAGACGCGAACGGGCAAGCACAAAGATCTCTT
TCATCCTGACCAATTGATCAATGGAAAAGAGGATGCAGCAAACAATTATG
CTCGTGGACATTACACCGTTGCGGGAAGTAGTATCAATTCATATCGGACA
AGCTGGTTGCCAAATAGGGAACTCGTGTTGGGAATTGTATTGTTTGGAAC
ACGGGATTTCCCCTGATGGATTGGTTCCTGATGGTAATGAAATCAATGGT
GCCTGCAAATCCTTCTTCTCGGAAACAGGAGGCGGGAAATTCGTTCCCAG
AGCTGTCTTTGCTGACTTGGAGCCCACTGTTATTGATGGTATGGAGGAAG
GAGAATTTGCGGAAGCCAGGGAGAATTTGGCAGCCCTGGAAAAAGATTAC
GAAGAAGTAGGAATGGATTCTAATGATATGATAGACGATGAGGATGCTGA
TGAGTATTGAGGCGTGAGATTATTGACGAAGTGTTGGAAGCCATCCGAAA
GATTACACAAAACTGTTACAGTCTTCAAGGATTCATTGTTTACCATTCCC
TTGGAGGAGGAACCGGCTCCGGACTCACATCCCTCCTTGCCGAAAGAATT
TCTGCAGAACATGGCAAGAAATGCAAACTGGCTTTCACCGTTCATCCGGC
ACCTCAGGTCTCAACTGCCGTCGTAGAACCATACAATACAGTCTTGACAA
GTCATACTGGTTTGGAGCATCAAGATTGTGCTTTTATGGTTGACAACGAG
GCTATCTTCGAATTATGCCGGACAAACCTTAATATCGAACGTCCGACATA
TGTTAATTTGAACCGTTTAATTGGACAGGTGGTTTCAAGTATTACAGCCT
CTCTTAGATTCGAAGGTTCCTTGAATGTTGATCTGAATGAATTCCAAACT
AACTTGGTACCATACCCAAGAATTCATTTTCCGGTACCGGCATTTGCACC
TGTCGTTTCCGTAGAAAAATCCCACCATGAAAAACACTCGGTAACCGAAC
TTACTAATGCTTGTTTCGAGTCGAAATCACAAATGACAAAATTCGACCCA
CGTGGAGGGAAATACATGGCATGTTGTTTGTTATACCGTGGAAATGTCCA
GCCTAAGGACGTCAATTCTGCAATCTCAACCGTCAAGGCTAAACGTACAA
TCGAATTTGTCGATTGGTGTCCAACTGGGTTTAAAGTTGGTATCAACCAA
TTCGCCCCGGCGACCGTACCAAACGGAGACTTGGCAAAGCTTGACAGAGC
TGTTTGTATGCTATCAAACACGACTGCTATTGGTGAAGTATGGTCACGTG
TTGATCATAAATTCGATTTGATGTACCGCAAACGTGCTTTTGTGCATTGG
TATGTAGGAGAAGACGAGACGCGAACGGGCAAGCACAAAGATCTCTTTCA
TCCTGACCAATTGATCAATGGAAAAGAGGATGCAGCAAACAATTATGCTC
GTGGACATTACACCGTTGCGGGAAGTAGTATCAATTCATATCGGACAAGC
TGGTTGCCAAATAGGGAACTCGTGTTGGGAATTGTATTGTTTGGAACACG
GGATTTCCCCTGATGGATTGGTTCCTGATGGTAATGAAATCAATGGTGCC
TGCAAATCCTTCTTCTCGGAAACAGGAGGCGGGAAATTCGTTCCCAGAGC
TGTCTTTGCTGACTTGGAGCCCACTGTTATTGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004556-exon-sc0000045-1575043694:459278..459728 | TCONS_00004556-exon-sc0000045-1575043694:459278..459728 | Clytia hemisphaerica | exon |
| TCONS_00004556-exon-sc0000045-1575043694:458716..458929 | TCONS_00004556-exon-sc0000045-1575043694:458716..458929 | Clytia hemisphaerica | exon |
| TCONS_00004556-exon-sc0000045-1575043694:458003..458107 | TCONS_00004556-exon-sc0000045-1575043694:458003..458107 | Clytia hemisphaerica | exon |
| TCONS_00004556-exon-sc0000045-1575043694:456848..457750 | TCONS_00004556-exon-sc0000045-1575043694:456848..457750 | Clytia hemisphaerica | exon |
| TCONS_00004556-exon-sc0000045-1575043694:454644..456638 | TCONS_00004556-exon-sc0000045-1575043694:454644..456638 | Clytia hemisphaerica | exon |
| TCONS_00004556-exon-sc0000045-1510915933:459278..459728 | TCONS_00004556-exon-sc0000045-1510915933:459278..459728 | Clytia hemisphaerica | exon |
| TCONS_00004556-exon-sc0000045-1510915933:458716..458929 | TCONS_00004556-exon-sc0000045-1510915933:458716..458929 | Clytia hemisphaerica | exon |
| TCONS_00004556-exon-sc0000045-1510915933:458003..458107 | TCONS_00004556-exon-sc0000045-1510915933:458003..458107 | Clytia hemisphaerica | exon |
| TCONS_00004556-exon-sc0000045-1510915933:456848..457750 | TCONS_00004556-exon-sc0000045-1510915933:456848..457750 | Clytia hemisphaerica | exon |
| TCONS_00004556-exon-sc0000045-1510915933:454644..456638 | TCONS_00004556-exon-sc0000045-1510915933:454644..456638 | Clytia hemisphaerica | exon |
| TCONS_00004556-exon-sc0000045-1491911889:459278..459728 | TCONS_00004556-exon-sc0000045-1491911889:459278..459728 | Clytia hemisphaerica | exon |
| TCONS_00004556-exon-sc0000045-1491911889:458716..458929 | TCONS_00004556-exon-sc0000045-1491911889:458716..458929 | Clytia hemisphaerica | exon |
| TCONS_00004556-exon-sc0000045-1491911889:458003..458107 | TCONS_00004556-exon-sc0000045-1491911889:458003..458107 | Clytia hemisphaerica | exon |
| TCONS_00004556-exon-sc0000045-1491911889:456848..457750 | TCONS_00004556-exon-sc0000045-1491911889:456848..457750 | Clytia hemisphaerica | exon |
| TCONS_00004556-exon-sc0000045-1491911889:454644..456638 | TCONS_00004556-exon-sc0000045-1491911889:454644..456638 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000045 | supercontig | sc0000045:454644..459728 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005525 | GTP binding |
| GO:0005200 | structural constituent of cytoskeleton |
| GO:0003924 | GTPase activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005874 | microtubule |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007017 | microtubule-based process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007017 |
microtubule-based process |
| cellular_component |
GO:0005874 |
microtubule |
| molecular_function |
GO:0003924 |
GTPase activity |
| molecular_function |
GO:0005525 |
GTP binding |
| molecular_function |
GO:0005200 |
structural constituent of cytoskeleton |
Blast
BLAST of TCONS_00004556 vs. Swiss-Prot (Human)
Match: TBA1A (Tubulin alpha-1A chain OS=Homo sapiens GN=TUBA1A PE=1 SV=1) HSP 1 Score: 636.336 bits (1640), Expect = 0.000e+0 Identity = 328/439 (74.72%), Postives = 377/439 (85.88%), Query Frame = 2
Query: 449 MREVVSIHIGQAGCQIGNSCWELYCLEHGISPDGLVPDGNEINGACKSF---FSETGGGKFVPRAVFADLEPTVIDETRTGKHKDLFHPDQLINGKEDAANNYARGHYTVGREIIDEVLEAIRKITQNCYSLQGFIVYHXXXXXXXXXXXXXXAERISAEHGKKCKLAFTVHPAPQVSTAVVEPYNTVLTSHTGLEHQDCAFMVDNEAIFELCRTNLNIERPTYVNLNRLIGQVVSSITASLRFEGSLNVDLNEFQTNLVPYPRIHXXXXXXXXXXSVEKSHHEKHSVTELTNACFESKSQMTKFDPRGGKYMACCLLYRGNVQPKDVNSAISTVKAKRTIEFVDWCPTGFKVGINQFAPATVPNGDLAKLDRAVCMLSNTTAIGEVWSRVDHKFDLMYRKRAFVHWYVXXXXXXXXXXXXXXNLAALEKDYEEVGMDS 1756
MRE +SIH+GQAG QIGN+CWELYCLEHGI PDG +P I G SF FSETG GK VPRAVF DLEPTVIDE RTG ++ LFHP+QLI GKEDAANNYARGHYT+G+EIID VL+ IRK+ C LQGF+V+HS GGGTGSG TSLL ER+S ++GKK KL F+++PAPQVSTAVVEPYN++LT+HT LEH DCAFMVDNEAI+++CR NL+IERPTY NLNRLIGQ+VSSITASLRF+G+LNVDL EFQTNLVPYPRIHFP+ +APV+S EK++HE+ SV E+TNACFE +QM K DPR GKYMACCLLYRG+V PKDVN+AI+T+K KRTI+FVDWCPTGFKVGIN P VP GDLAK+ RAVCMLSNTTAI E W+R+DHKFDLMY KRAFVHWYVGEGMEEGEF+EARE++AALEKDYEEVG+DS
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDS 439
The following BLAST results are available for this feature:
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