TCONS_00004556-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004556-protein
Unique NameTCONS_00004556-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length448

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004556-protein ID=TCONS_00004556-protein|Name=TCONS_00004556-protein|organism=Clytia hemisphaerica|type=polypeptide|length=448bp
MREVVSIHIGQAGCQIGNSCWELYCLEHGISPDGLVPDGNEINGACKSFF
SETGGGKFVPRAVFADLEPTVIDETRTGKHKDLFHPDQLINGKEDAANNY
ARGHYTVGREIIDEVLEAIRKITQNCYSLQGFIVYHSLGGGTGSGLTSLL
AERISAEHGKKCKLAFTVHPAPQVSTAVVEPYNTVLTSHTGLEHQDCAFM
VDNEAIFELCRTNLNIERPTYVNLNRLIGQVVSSITASLRFEGSLNVDLN
EFQTNLVPYPRIHFPVPAFAPVVSVEKSHHEKHSVTELTNACFESKSQMT
KFDPRGGKYMACCLLYRGNVQPKDVNSAISTVKAKRTIEFVDWCPTGFKV
GINQFAPATVPNGDLAKLDRAVCMLSNTTAIGEVWSRVDHKFDLMYRKRA
FVHWYVGEGMEEGEFAEARENLAALEKDYEEVGMDSNDMIDDEDADEY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002561XLOC_002561Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004556TCONS_00004556Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002452Alpha_tubulin
IPR000217Tubulin
IPR018316Tubulin/FtsZ_2-layer-sand-dom
IPR003008Tubulin_FtsZ_GTPase
IPR017975Tubulin_CS
IPR008280Tub_FtsZ_C
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0005200structural constituent of cytoskeleton
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005874microtubule
Vocabulary: Biological Process
TermDefinition
GO:0007017microtubule-based process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007017 microtubule-based process
cellular_component GO:0005874 microtubule
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0005200 structural constituent of cytoskeleton
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 415..435
NoneNo IPR availableGENE3D1.10.287.600coord: 381..432
e-value: 6.6E-30
score: 102.4
NoneNo IPR availableCDDcd02186alpha_tubulincoord: 2..432
e-value: 0.0
score: 785.96
IPR002452Alpha tubulinPRINTSPR01162ALPHATUBULINcoord: 318..339
score: 60.77
coord: 18..33
score: 85.45
coord: 85..98
score: 83.73
coord: 419..435
score: 82.5
coord: 357..376
score: 70.04
coord: 344..357
score: 73.17
coord: 117..125
score: 35.85
coord: 145..157
score: 58.5
coord: 42..55
score: 45.2
coord: 158..169
score: 57.0
coord: 271..286
score: 52.68
coord: 382..398
score: 72.12
coord: 211..223
score: 68.58
IPR000217TubulinPRINTSPR01161TUBULINcoord: 150..171
score: 37.82
coord: 131..149
score: 69.14
coord: 10..30
score: 66.83
coord: 189..209
score: 44.23
coord: 377..405
score: 57.75
coord: 175..188
score: 63.22
coord: 50..69
score: 65.13
coord: 92..103
score: 65.77
coord: 105..129
score: 45.83
IPR018316Tubulin/FtsZ, 2-layer sandwich domainSMARTSM00865Tubulin_C_4coord: 245..390
e-value: 5.7E-43
score: 158.7
IPR018316Tubulin/FtsZ, 2-layer sandwich domainPFAMPF03953Tubulin_Ccoord: 260..388
e-value: 1.1E-45
score: 154.8
IPR018316Tubulin/FtsZ, 2-layer sandwich domainGENE3D3.30.1330.20coord: 262..380
e-value: 4.8E-49
score: 164.9
IPR003008Tubulin/FtsZ, GTPase domainSMARTSM00864Tubulin_4coord: 46..243
e-value: 4.7E-64
score: 228.8
IPR003008Tubulin/FtsZ, GTPase domainPFAMPF00091Tubulincoord: 3..210
e-value: 1.5E-63
score: 214.5
IPR003008Tubulin/FtsZ, GTPase domainGENE3D3.40.50.1440coord: 1..261
e-value: 4.4E-113
score: 376.6
IPR003008Tubulin/FtsZ, GTPase domainSUPERFAMILY52490Tubulin nucleotide-binding domain-likecoord: 1..241
IPR017975Tubulin, conserved sitePROSITEPS00227TUBULINcoord: 139..145
IPR008280Tubulin/FtsZ, C-terminalSUPERFAMILY55307Tubulin C-terminal domain-likecoord: 243..434

Blast
[Close]
BLAST of TCONS_00004556-protein vs. Swiss-Prot (Human)
Match: TBA1A (Tubulin alpha-1A chain OS=Homo sapiens GN=TUBA1A PE=1 SV=1)

HSP 1 Score: 689.878 bits (1779), Expect = 0.000e+0
Identity = 327/439 (74.49%), Postives = 378/439 (86.10%), Query Frame = 0 
Query:    1 MREVVSIHIGQAGCQIGNSCWELYCLEHGISPDGLVPDGNEING---ACKSFFSETGGGKFVPRAVFADLEPTVIDETRTGKHKDLFHPDQLINGKEDAANNYARGHYTVGREIIDEVLEAIRKITQNCYSLQGFIVYHSLGGGTGSGLTSLLAERISAEHGKKCKLAFTVHPAPQVSTAVVEPYNTVLTSHTGLEHQDCAFMVDNEAIFELCRTNLNIERPTYVNLNRLIGQVVSSITASLRFEGSLNVDLNEFQTNLVPYPRIHFPVPAFAPVVSVEKSHHEKHSVTELTNACFESKSQMTKFDPRGGKYMACCLLYRGNVQPKDVNSAISTVKAKRTIEFVDWCPTGFKVGINQFAPATVPNGDLAKLDRAVCMLSNTTAIGEVWSRVDHKFDLMYRKRAFVHWYVGEGMEEGEFAEARENLAALEKDYEEVGMDS 436
            MRE +SIH+GQAG QIGN+CWELYCLEHGI PDG +P    I G   +  +FFSETG GK VPRAVF DLEPTVIDE RTG ++ LFHP+QLI GKEDAANNYARGHYT+G+EIID VL+ IRK+   C  LQGF+V+HS GGGTGSG TSLL ER+S ++GKK KL F+++PAPQVSTAVVEPYN++LT+HT LEH DCAFMVDNEAI+++CR NL+IERPTY NLNRLIGQ+VSSITASLRF+G+LNVDL EFQTNLVPYPRIHFP+  +APV+S EK++HE+ SV E+TNACFE  +QM K DPR GKYMACCLLYRG+V PKDVN+AI+T+K KRTI+FVDWCPTGFKVGIN   P  VP GDLAK+ RAVCMLSNTTAI E W+R+DHKFDLMY KRAFVHWYVGEGMEEGEF+EARE++AALEKDYEEVG+DS
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDS 439
The following BLAST results are available for this feature:
BLAST of TCONS_00004556-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBA1A0.000e+074.49Tubulin alpha-1A chain OS=Homo sapiens GN=TUBA1A P... [more]
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