TCONS_00004554 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004554
Unique NameTCONS_00004554
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length685

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004554 ID=TCONS_00004554|Name=TCONS_00004554|organism=Clytia hemisphaerica|type=transcript|length=685bp
CTCCGTTTGTTTCGTGTATTTCGACCACTTCGATTGATCGTCAAGTCGAA
CAATTTGAAAGTAGTGCTTGATACCATCATCAAATCATTCAATGTTTTAT
TCCATGTACTGATGTTTATTCTCTTACTTATCTTTCTCTATGCTATCACT
GGTATGGAGTTATTTGGAGGTAGGTTTTTCCACATTCACCAGTTTTCACC
AATCATACAAGTATTGAATCCAAGCATCAAGAGGTGCCTTATAATCTTGT
TATAAAGCTTCTAGATTTGTTTTCTTATACCCTGACCGTAAACATCAGTT
TTCAGAAATAAATCTTATATGGATTTCATGGTCGAAATAAGACCCTGACT
ACTTTTCCTCTTGATTATTTAGATACCGTCTACACGGCATGTGTATACAA
CGGAACGGGTCAACTGTGCGATCCATTCTTACTATGTGATTTTGGAGATA
CGACTTTCTGTCCGGAACGTTTCGGATTGAACGCCTCTTGTATGGAGTAT
CCCAGTAAAGGAGTTGAATACTCACACttcgaaaatatcttttcatctAT
GCTGACTGTACTACAATGCATCACTATGGAAGATTGGGTTCTAGTTGCTT
ATGATGTAAGTAGCAAGTCCTTGTTTggtatctttatttttttgtatcaa
tGCTGTGATTAACTGACAAAAGGAGCTGAATGAGA
Run BLAST on NCBI

transcript from alignment at sc0000045:393588..394272-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004554 ID=TCONS_00004554|Name=TCONS_00004554|organism=Clytia hemisphaerica|type=transcript|length=685bp|location=Sequence derived from alignment at sc0000045:393588..394272- (Clytia hemisphaerica)
CTCCGTTTGTTTCGTGTATTTCGACCACTTCGATTGATCGTCAAGTCGAA
CAATTTGAAAGTAGTGCTTGATACCATCATCAAATCATTCAATGTTTTAT
TCCATGTACTGATGTTTATTCTCTTACTTATCTTTCTCTATGCTATCACT
GGTATGGAGTTATTTGGAGGTAGGTTTTTCCACATTCACCAGTTTTCACC
AATCATACAAGTATTGAATCCAAGCATCAAGAGGTGCCTTATAATCTTGT
TATAAAGCTTCTAGATTTGTTTTCTTATACCCTGACCGTAAACATCAGTT
TTCAGAAATAAATCTTATATGGATTTCATGGTCGAAATAAGACCCTGACT
ACTTTTCCTCTTGATTATTTAGATACCGTCTACACGGCATGTGTATACAA
CGGAACGGGTCAACTGTGCGATCCATTCTTACTATGTGATTTTGGAGATA
CGACTTTCTGTCCGGAACGTTTCGGATTGAACGCCTCTTGTATGGAGTAT
CCCAGTAAAGGAGTTGAATACTCACACTTCGAAAATATCTTTTCATCTAT
GCTGACTGTACTACAATGCATCACTATGGAAGATTGGGTTCTAGTTGCTT
ATGATGTAAGTAGCAAGTCCTTGTTTGGTATCTTTATTTTTTTGTATCAA
TGCTGTGATTAACTGACAAAAGGAGCTGAATGAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002560XLOC_002560Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004554-exon-sc0000045-1575043694:393588..394272TCONS_00004554-exon-sc0000045-1575043694:393588..394272Clytia hemisphaericaexon
TCONS_00004554-exon-sc0000045-1510915933:393588..394272TCONS_00004554-exon-sc0000045-1510915933:393588..394272Clytia hemisphaericaexon
TCONS_00004554-exon-sc0000045-1491911889:393588..394272TCONS_00004554-exon-sc0000045-1491911889:393588..394272Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:393588..394272 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0918717	0.50322	0.597365	0.182938	0.143178	0.221551	0	0.0628076	0	0	0	0.00275387	0	0	0	0	0	0	0.187419	0.0720628	0	0	0	0	0.142837	0	0	0.0652481	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004554 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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