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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004545 ID=TCONS_00004545|Name=TCONS_00004545|organism=Clytia hemisphaerica|type=transcript|length=4328bpRun BLAST on NCBI protein sequence of TCONS_00004545-protein >TCONS_00004545-protein ID=TCONS_00004545-protein|Name=TCONS_00004545-protein|organism=Clytia hemisphaerica|type=polypeptide|length=819bp MLCSILTMLYLLAGLDMISSYTLFDIKMPNVSPKEDESYLCTGKKLPRTRRun BLAST on NCBI transcript from alignment at sc0000045:213332..231199- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004545 ID=TCONS_00004545|Name=TCONS_00004545|organism=Clytia hemisphaerica|type=transcript|length=17868bp|location=Sequence derived from alignment at sc0000045:213332..231199- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000045:213332..231199- >TCONS_00004545 ID=TCONS_00004545|Name=TCONS_00004545|organism=Clytia hemisphaerica|type=CDS|length=49200bp|location=Sequence derived from alignment at sc0000045:213332..231199- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004545 vs. Swiss-Prot (Human)
Match: AMD (Peptidyl-glycine alpha-amidating monooxygenase OS=Homo sapiens GN=PAM PE=1 SV=2) HSP 1 Score: 201.83 bits (512), Expect = 1.183e-52 Identity = 108/274 (39.42%), Postives = 147/274 (53.65%), Query Frame = 2
Query: 176 SSYTLFDIKMPNVSPKEDESYLCTGKKLPRTRDRYYAYKFEPNADEKTAHHMLVYACRSLSKRNRHNAYWKC-HGTPCSGGQIIYAWAKNAEGLTLPKHVGFPLGDDFDLNYIVQQIHYA--RPLQDDEYDSSGVKIRLTKYEPQFVASIYLFAS-NFQIPPNSKGYNVDMACKYRGDSIKPFAFRTHAHKHGRSISAYRVRDGVWDQIGIGSPQRPQAFYPIKKEDRLLLKSNDVLVARCTFDTMDETKTISAGSYSSDEMCNFYMMYYTMNK 985
SS DI+MP V+PK+ ++Y C ++P + + F+P A T HHML++ C S +YW C GT I+YAWA+NA LPK VGF +G + Y V Q+HY +D+ D SGV + LT+ +A +YL S + IP K N D++C Y+ + FA+R H H G+ +S YRVR+G W IG SPQ PQAFYP+ + + D+L ARC F T+ G SSDEMCN Y+MYY K
Sbjct: 54 SSDFALDIRMPGVTPKQSDTYFCMSMRIP-VDEEAFVIDFKPRASMDTVHHMLLFGCNMPSSTG---SYWFCDEGTCTDKANILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNNKDCSGVSLHLTRLPQPLIAGMYLMMSVDTVIPAGEKVVNSDISCHYKNYPMHVFAYRVHTHHLGKVVSGYRVRNGQWTLIGRQSPQLPQAFYPVGHP--VDVSFGDLLAARCVFTGEGRTEATHIGGTSSDEMCNLYIMYYMEAK 321 HSP 2 Score: 130.954 bits (328), Expect = 1.483e-30 Identity = 68/172 (39.53%), Postives = 101/172 (58.72%), Query Frame = 2
Query: 1424 PIEEKTIYIVNSNDGSLFNSFGANVFYLPSSVRVDHQGHFFITDLGRHQVLKFDPLKKETLQLVLGQEGIPGEDRNHFCSPADVVVD-HKNHIYVADGLCNNRIVKFDANGKYLSEFGS---------GHLKHPQHLAISG--HHIYVATQDRHQIYVFDFDGK-FIRALSH 1900
PIEE TI +++ N+ ++ S G N+FYLP + +D G++++TD+ HQV K DP KE L+LG+ PG D+NHFC P DV VD IYV+DG CN+RIV+F +GK+++++G G P LA+ + VA ++ +I F D K F+R + H
Sbjct: 553 PIEEDTILVIDPNNAAVLQSSGKNLFYLPHGLSIDKDGNYWVTDVALHQVFKLDPNNKEGPVLILGRSMQPGSDQNHFCQPTDVAVDPGTGAIYVSDGYCNSRIVQFSPSGKFITQWGEESSGSSPLPGQFTVPHSLALVPLLGQLCVADRENGRIQCFKTDTKEFVREIKH 724 The following BLAST results are available for this feature:
BLAST of TCONS_00004545 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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