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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004544 ID=TCONS_00004544|Name=TCONS_00004544|organism=Clytia hemisphaerica|type=transcript|length=2139bp AAAAAAGTATTGAGCATTCTTcgtaaatttttcattttcttagtATGCGT ATCTGAATCGAAAAACAGTTAGAATTGACAGTTACTTTTTTTGATCAGGA TAGGAAGTATTGGGAGCTACCTCCTAGAAACAGAATTTACAAACATTTTT GGGTCACCTATTGATGTGCTGCACAGATAATATaTCAGCATGGCAGTAAA ACATTCGTTACTCATACTCATTGTCTCTGGTGGATTAATTGCTCTCATGG GATTTGTTTTGACAATGTTTGGGTTTGCATCTTCATGTAACAAGCCACCA AGATGTCTGAAGTCTGAAAACTCACGAATCCTTTCCTACAAGATCTTCGG CCCTATGTTATTTTTCTTCGGCCTGGCCGCTTCTGGTGCCGGTATCATAC TTAAATGGCGACTGAAACCAAAACATCTAAGACTTGAGTACCGTGTTTCT AGTATCGAGGGAACTAACTTCACCGGTGACACAACCCTGGAGACTGCAGA ATCCCCTGTGAATGTAACACCAACCGAAGTAACATTCTCACCAAACTTCA CCACCACAACGTCTATGCAGATTACTGAACCAGTCACAGTGTCAAACGAT GGTACGGATCACGCAGTTGGAGAGCCATCCACGGTGGAGAAACAATATAA CTCTCCTCCATGGGTGCCTTCTATGTTAGCTCCGCCAACGTACGAAGAAG TGTGTAGTAAGCCGGCTGAAAAGGAGTGTAGTAGCGCAAAATTACAAGAC CACTCCGAGCAGGAGGGTGTAGATGTGACTGATGCTGACGTCAGTGATTT TGTGATCAATGAAGATGAATTGGAAGATGAAGTTTTTGAGGCGGATgata cggaggagagtgaagtGTATGAAATTCAAAATCTCATTCATGGCAAAAAT TGCTCAGAAGCTTGAGATCATTCATTGATTTTTCCTGTTAAACCGTCTTT CAAGACGGGGTTTTAACATTTTTCGACGGCTTTTAACGACACTTTGAGGA CTTTTAAAGGAACCATACTGGTGCAGGCGAGtttaaaaaacaatgaaaag taTTGACATACTGTTTGATGATTTGTTGCGGAGGAAGTATGATGTTTTAT CAGTTAACAGTAGAATTTTGGAAGAGGTGGGCGGATAATTTTTGATCCGT ACACCCCAGTAATTGCTACAACAATGTTAGCTAGAGCGCGACATGGACGT GATTTATGCGGCTGGGCGAAACAAGAAACTTAAAAGtcctttttttgtaa atttatttaGTGAATGAATTTTCTTACTCTTGTTTATATGATTAAATCTT TTAAAGAAGGAAttgttaaaatattgaaatatttacaCGTAAAATTACAT ACACCTGCTTAAGATaagttacaaaaatattaaaaaacatcAAGAAAAGG TTACTTTCTTCCAAACATATGTATAATATGTAGAACACGGTAAGCCATAA CAAAATTTCGGCagcaagtgattttttttcacttttcgcCGACGAATCTC TACTGACGAGGAAAGTACAAATTttggatttaaaaattttgaatttttat atatctttacgactctctctctctctctctctctggaAAATATCAACCCT CTATTGATAGTAGTTCAGAATGTTCGAGGGATTGTTGTCTTTTGTAAGCT GAAGTTATTGCCATCTCTGCGAAGCAACAAAGTAAACTTCTTTGTCTAAG ATTATCAGCATTCCATACAAAGTTATATCCAGTCTTTTTCAAGATAAGGT ACCACCtgataaattatttttactgtTATAACTTCGGGATAATCATCTCA AAAGCTGCAACATATATGACCTTTTGGGTTTTTGGCATCATCCTTTTATC GGATGGTATGGAATCGTTATTCCgcaattttccagaaaaatctAGTCCGA AGAAACCCATCTAATCTTTAAATTTCATGACCGTAATTCATGTGATTCGA ACGGTCTACTTGTTACCATATAGCCTCTCTCTCTatgattttttaatcat ttctgACTTGCGTTATTCCGAATACACCATCAATAATTCCATCAAGAGTT TCCAAAGCTGACGGTTCAATATTTTCTGGAGGTAACAAAAAACCAATTTT AGTATTTCGATTTCTCAATTCAATGATGTAGGAGTTGGT Run BLAST on NCBI transcript from alignment at sc0000045:172994..177138- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004544 ID=TCONS_00004544|Name=TCONS_00004544|organism=Clytia hemisphaerica|type=transcript|length=4145bp|location=Sequence derived from alignment at sc0000045:172994..177138- (Clytia hemisphaerica) AAAAAAGTATTGAGCATTCTTCGTAAATTTTTCATTTTCTTAGTATGCGT
ATCTGAATCGAAAAACAGTTAGAATTGACAGTTACTTTTTTTGATCAGGA
TAGGAAGTATTGGGAGCTACCTCCTAGAAACAGAATTTACAAACATTTTT
GGGTCACCTATTGATGTGCTGCACAGATAATATGTAAGTACGTTTATATT
TAAACTCACCTGCTAATTTTGACCATTTCTTCTAAAAGATTAGATACCGG
TAGACTTCTTTGAAAGTTTTCTTCCGAGGATAGATAAGATTAGGTGTTGG
AGTATTTTTATCAGTTTTACCCTCAAGATGGCAATCGATTCTTGTTTTGT
AGCTTACAATCTACCGCCAAAGAAACAGGTAAAAAGATTTCTGTTGCTAT
CTTCCTGGGTGTTGATTTTAGTGAATAATGGTAGAATATCTTTGTGTAAT
TTTGAATACACCTTTTCGACCGTAGTCACTCAGCCAGGCGCGTGCCACCT
ACAATCAGGGACAAAATACTTGGCACAAAAGGTAAATTCACCGGGGTGTT
TTGAAACCACAATCGATTTGTAAGTGCTCTAAAGTAGGTTCGAAGGGTAG
AGTTTTAACCCTGAGTTTTAACGCTAGACTTAGGACCTTAGGATCTGAGG
ATGTGAGGATCAAAAAGTTTAAAAATGGTCCAGTAGGGCTTGAAATATAG
CCTAGAAACCAATAAATCCCTCCCAGATCGAAATAATCGATGAAATCAAG
TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAAATCAAGTTGA
GGGCCTGAAATTGACATTCTCGCTCGAACTTCAATTTTCGAAAAATGGTA
AATTAGCCAAAAGTGCAAATATATTATGGCACGGATTGTAATTATCTAAA
TGTCCCACAAAACTCGACCCAATCCTTTTTTGACACATTTTTCTATTGCC
TATAGGTGCGAAAAAAGGACTGGGACGGATTTAGTGGGATAAAGCGGGAA
AAAAATGCCCGCGCGGCAATTGGCGGCTACGGTCGAAAAGATGTATTTAC
ACAACATCGTGATCTGCTTAACTTTCCGAAAGAGGAGCCTATCGGGTCGC
TTTCGACTTCGGTCACAGACTTAACTTTCCAACTAATATTTCAATTGTAG
CACAAAATCAGTGCTTTTTTGGAAAGTTAAGTGAGATTCTGGACAAGTCC
GGTTGATTTACTACGGTAATCAAATTAATTTTGCATTTATAAAAGGTTTG
AACATCAGGATATCGCCGAGGTTCTAGAATAATTTCATGTAAATGCTTCA
CGCCCTTTGTTTCCAAAGGTTTGTAGCCACAGATATGTGTAAAGCCCGAA
GGGCTAGATTTGCGGCTTTTATCGAAAAGTGAAGCCTAGGTTTGGAAGGA
TTTCCTACCAAAGTCACGTGACTAAANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGGCAC
GAAATTTAAAAAGTCAAATTTTTGCTTCACTTTTTTTTGCTGGAGAAAGC
TTAAAGTTGCCTATCTAGCCCTTCGGGCTTAGATATCTGTGTTTGTAGCT
GTCTTATTCTGACTAGCCACCGGTATCATTACAGTAATGGATCGGGCTAG
TTTATTCCTCGATTCTATTCGCATGCACTTTACCATTACTTTACCATTGA
ACTAGTGATGTAAAAATACATTTTCTTTTATTTTTACAGATCAGCATGGC
AGTAAAACATTCGTTACTCATACTCATTGTCTCTGGTGGATTAATTGCTC
TCATGGGATTTGTTTTGACAATGTTTGGGTTTGCATCTTCATGTAACAAG
CCACCAAGATGTCTGAAGTCTGAAAACTCACGAATCCTTTCCTACAAGAT
CTTCGGCCCTATGTTATTTTTCTTCGGCCTGGCCGCTTCTGGTGCCGGTA
TCATACTTAAATGGCGACTGAAACCAAAACATCTAAGACTTGAGTACCGT
GTTTCTAGTATCGAGGGAACTAACTTCACCGGTGACACAACCCTGGAGAC
TGCAGAATCCCCTGTGAATGTAACACCAACCGAAGTAACATTCTCACCAA
ACTTCACCACCACAACGTCTATGCAGATTACTGAACCAGTCACAGTGTCA
AACGATGGTACGGATCACGCAGTTGGAGAGCCATCCACGGTGGAGAAACA
ATATAACTCTCCTCCATGGGTGCCTTCTATGTTAGCTCCGCCAACGTACG
AAGAAGTGTGTAGTAAGCCGGCTGAAAAGGAGTGTAGTAGCGCAAAATTA
CAAGACCACTCCGAGCAGGAGGGTGTAGATGTGACTGATGCTGACGTCAG
TGATTTTGTGATCAATGAAGATGAATTGGAAGATGAAGTTTTTGAGGCGG
ATGATACGGAGGAGAGTGAAGTGTATGAAATTCAAAATCTCATTCATGGC
AAAAATTGCTCAGAAGCTTGAGATCATTCATTGATTTTTCCTGTTAAACC
GTCTTTCAAGACGGGGTTTTAACATTTTTCGACGGCTTTTAACGACACTT
TGAGGACTTTTAAAGGAACCATACTGGTGCAGGCGAGTTTAAAAAACAAT
GAAAAGTATTGACATACTGTTTGATGATTTGTTGCGGAGGAAGTATGATG
TTTTATCAGTTAACAGTAGAATTTTGGAAGAGGTGGGCGGATAATTTTTG
ATCCGTACACCCCAGTAATTGCTACAACAATGTTAGCTAGAGCGCGACAT
GGACGTGATTTATGCGGCTGGGCGAAACAAGAAACTTAAAAGTCCTTTTT
TTGTAAATTTATTTAGTGAATGAATTTTCTTACTCTTGTTTATATGATTA
AATCTTTTAAAGAAGGAATTGTTAAAATATTGAAATATTTACACGTAAAA
TTACATACACCTGCTTAAGATAAGTTACAAAAATATTAAAAAACATCAAG
AAAAGGTTACTTTCTTCCAAACATATGTATAATATGTAGAACACGGTAAG
CCATAACAAAATTTCGGCAGCAAGTGATTTTTTTTCACTTTTCGCCGACG
AATCTCTACTGACGAGGAAAGTACAAATTTTGGATTTAAAAATTTTGAAT
TTTTATATATCTTTACGACTCTCTCTCTCTCTCTCTCTCTGGAAAATATC
AACCCTCTATTGATAGTAGTTCAGAATGTTCGAGGGATTGTTGTCTTTTG
TAAGCTGAAGTTATTGCCATCTCTGCGAAGCAACAAAGTAAACTTCTTTG
TCTAAGATTATCAGCATTCCATACAAAGTTATATCCAGTCTTTTTCAAGA
TAAGGTACCACCTGATAAATTATTTTTACTGTTATAACTTCGGGATAATC
ATCTCAAAAGCTGCAACATATATGACCTTTTGGGTTTTTGGCATCATCCT
TTTATCGGATGGTATGGAATCGTTATTCCGCAATTTTCCAGAAAAATCTA
GTCCGAAGAAACCCATCTAATCTTTAAATTTCATGACCGTAATTCATGTG
ATTCGAACGGTCTACTTGTTACCATATAGCCTCTCTCTCTATGATTTTTT
AATCATTTCTGACTTGCGTTATTCCGAATACACCATCAATAATTCCATCA
AGAGTTTCCAAAGCTGACGGTTCAATATTTTCTGGAGGTAACAAAAAACC
AATTTTAGTATTTCGATTTCTCAATTCAATGATGTAGGAGTTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00004544-exon-sc0000045-1575043694:176956..177138 | TCONS_00004544-exon-sc0000045-1575043694:176956..177138 | Clytia hemisphaerica | exon |
TCONS_00004544-exon-sc0000045-1575043694:172994..174949 | TCONS_00004544-exon-sc0000045-1575043694:172994..174949 | Clytia hemisphaerica | exon |
TCONS_00004544-exon-sc0000045-1510915933:176956..177138 | TCONS_00004544-exon-sc0000045-1510915933:176956..177138 | Clytia hemisphaerica | exon |
TCONS_00004544-exon-sc0000045-1510915933:172994..174949 | TCONS_00004544-exon-sc0000045-1510915933:172994..174949 | Clytia hemisphaerica | exon |
TCONS_00004544-exon-sc0000045-1491911889:176956..177138 | TCONS_00004544-exon-sc0000045-1491911889:176956..177138 | Clytia hemisphaerica | exon |
TCONS_00004544-exon-sc0000045-1491911889:172994..174949 | TCONS_00004544-exon-sc0000045-1491911889:172994..174949 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000045 | supercontig | sc0000045:172994..177138 - |
Blast
The following BLAST results are available for this feature:
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