TCONS_00004543 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004543
Unique NameTCONS_00004543
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2038

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004543 ID=TCONS_00004543|Name=TCONS_00004543|organism=Clytia hemisphaerica|type=transcript|length=2038bp
TTGGAGTATTTTTATCAGTTTTACCCTCAAGATGGCAATCGATTCTTGTT
TTGTAGCTTACAATCTACCGCCAAAGAAACAGaTCAGCATGGCAGTAAAA
CATTCGTTACTCATACTCATTGTCTCTGGTGGATTAATTGCTCTCATGGG
ATTTGTTTTGACAATGTTTGGGTTTGCATCTTCATGTAACAAGCCACCAA
GATGTCTGAAGTCTGAAAACTCACGAATCCTTTCCTACAAGATCTTCGGC
CCTATGTTATTTTTCTTCGGCCTGGCCGCTTCTGGTGCCGGTATCATACT
TAAATGGCGACTGAAACCAAAACATCTAAGACTTGAGTACCGTGTTTCTA
GTATCGAGGGAACTAACTTCACCGGTGACACAACCCTGGAGACTGCAGAA
TCCCCTGTGAATGTAACACCAACCGAAGTAACATTCTCACCAAACTTCAC
CACCACAACGTCTATGCAGATTACTGAACCAGTCACAGTGTCAAACGATG
GTACGGATCACGCAGTTGGAGAGCCATCCACGGTGGAGAAACAATATAAC
TCTCCTCCATGGGTGCCTTCTATGTTAGCTCCGCCAACGTACGAAGAAGT
GTGTAGTAAGCCGGCTGAAAAGGAGTGTAGTAGCGCAAAATTACAAGACC
ACTCCGAGCAGGAGGGTGTAGATGTGACTGATGCTGACGTCAGTGATTTT
GTGATCAATGAAGATGAATTGGAAGATGAAGTTTTTGAGGCGGATgatac
ggaggagagtgaagtGTATGAAATTCAAAATCTCATTCATGGCAAAAATT
GCTCAGAAGCTTGAGATCATTCATTGATTTTTCCTGTTAAACCGTCTTTC
AAGACGGGGTTTTAACATTTTTCGACGGCTTTTAACGACACTTTGAGGAC
TTTTAAAGGAACCATACTGGTGCAGGCGAGtttaaaaaacaatgaaaagt
aTTGACATACTGTTTGATGATTTGTTGCGGAGGAAGTATGATGTTTTATC
AGTTAACAGTAGAATTTTGGAAGAGGTGGGCGGATAATTTTTGATCCGTA
CACCCCAGTAATTGCTACAACAATGTTAGCTAGAGCGCGACATGGACGTG
ATTTATGCGGCTGGGCGAAACAAGAAACTTAAAAGtcctttttttgtaaa
tttatttaGTGAATGAATTTTCTTACTCTTGTTTATATGATTAAATCTTT
TAAAGAAGGAAttgttaaaatattgaaatatttacaCGTAAAATTACATA
CACCTGCTTAAGATaagttacaaaaatattaaaaaacatcAAGAAAAGGT
TACTTTCTTCCAAACATATGTATAATATGTAGAACACGGTAAGCCATAAC
AAAATTTCGGCagcaagtgattttttttcacttttcgcCGACGAATCTCT
ACTGACGAGGAAAGTACAAATTttggatttaaaaattttgaatttttata
tatctttacgactctctctctctctctctctctggaAAATATCAACCCTC
TATTGATAGTAGTTCAGAATGTTCGAGGGATTGTTGTCTTTTGTAAGCTG
AAGTTATTGCCATCTCTGCGAAGCAACAAAGTAAACTTCTTTGTCTAAGA
TTATCAGCATTCCATACAAAGTTATATCCAGTCTTTTTCAAGATAAGGTA
CCACCtgataaattatttttactgtTATAACTTCGGGATAATCATCTCAA
AAGCTGCAACATATATGACCTTTTGGGTTTTTGGCATCATCCTTTTATCG
GATGGTATGGAATCGTTATTCCgcaattttccagaaaaatctAGTCCGAA
GAAACCCATCTAATCTTTAAATTTCATGACCGTAATTCATGTGATTCGAA
CGGTCTACTTGTTACCATATAGCCTCTCTCTCTatgattttttaatcatt
tctgACTTGCGTTATTCCGAATACACCATCAATAATTCCATCAAGAGTTT
CCAAAGCTGACGGTTCAATATTTTCTGGAGGTAACAAAAAACCAATTTTA
GTATTTCGATTTCTCAATTCAATGATGTAGGAGTTGGT
Run BLAST on NCBI

protein sequence of TCONS_00004543-protein

>TCONS_00004543-protein ID=TCONS_00004543-protein|Name=TCONS_00004543-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
WSIFISFTLKMAIDSCFVAYNLPPKKQISMAVKHSLLILIVSGGLIALMG
FVLTMFGFASSCNKPPRCLKSENSRILSYKIFGPMLFFFGLAASGAGIIL
KWRLKPKHLRLEYRVSSIEGTNFTGDTTLETAESPVNVTPTEVTFSPNFT
TTTSMQITEPVTVSNDGTDHAVGEPSTVEKQYNSPPWVPSMLAPPTYEEV
CSKPAEKECSSAKLQDHSEQEGVDVTDADVSDFVINEDELEDEVFEADDT
EESEVYEIQNLIHGKNCSEA
Run BLAST on NCBI

transcript from alignment at sc0000045:172994..176842-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004543 ID=TCONS_00004543|Name=TCONS_00004543|organism=Clytia hemisphaerica|type=transcript|length=3849bp|location=Sequence derived from alignment at sc0000045:172994..176842- (Clytia hemisphaerica)
TTGGAGTATTTTTATCAGTTTTACCCTCAAGATGGCAATCGATTCTTGTT
TTGTAGCTTACAATCTACCGCCAAAGAAACAGGTAAAAAGATTTCTGTTG
CTATCTTCCTGGGTGTTGATTTTAGTGAATAATGGTAGAATATCTTTGTG
TAATTTTGAATACACCTTTTCGACCGTAGTCACTCAGCCAGGCGCGTGCC
ACCTACAATCAGGGACAAAATACTTGGCACAAAAGGTAAATTCACCGGGG
TGTTTTGAAACCACAATCGATTTGTAAGTGCTCTAAAGTAGGTTCGAAGG
GTAGAGTTTTAACCCTGAGTTTTAACGCTAGACTTAGGACCTTAGGATCT
GAGGATGTGAGGATCAAAAAGTTTAAAAATGGTCCAGTAGGGCTTGAAAT
ATAGCCTAGAAACCAATAAATCCCTCCCAGATCGAAATAATCGATGAAAT
CAAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAAATCAAG
TTGAGGGCCTGAAATTGACATTCTCGCTCGAACTTCAATTTTCGAAAAAT
GGTAAATTAGCCAAAAGTGCAAATATATTATGGCACGGATTGTAATTATC
TAAATGTCCCACAAAACTCGACCCAATCCTTTTTTGACACATTTTTCTAT
TGCCTATAGGTGCGAAAAAAGGACTGGGACGGATTTAGTGGGATAAAGCG
GGAAAAAAATGCCCGCGCGGCAATTGGCGGCTACGGTCGAAAAGATGTAT
TTACACAACATCGTGATCTGCTTAACTTTCCGAAAGAGGAGCCTATCGGG
TCGCTTTCGACTTCGGTCACAGACTTAACTTTCCAACTAATATTTCAATT
GTAGCACAAAATCAGTGCTTTTTTGGAAAGTTAAGTGAGATTCTGGACAA
GTCCGGTTGATTTACTACGGTAATCAAATTAATTTTGCATTTATAAAAGG
TTTGAACATCAGGATATCGCCGAGGTTCTAGAATAATTTCATGTAAATGC
TTCACGCCCTTTGTTTCCAAAGGTTTGTAGCCACAGATATGTGTAAAGCC
CGAAGGGCTAGATTTGCGGCTTTTATCGAAAAGTGAAGCCTAGGTTTGGA
AGGATTTCCTACCAAAGTCACGTGACTAAANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCG
GCACGAAATTTAAAAAGTCAAATTTTTGCTTCACTTTTTTTTGCTGGAGA
AAGCTTAAAGTTGCCTATCTAGCCCTTCGGGCTTAGATATCTGTGTTTGT
AGCTGTCTTATTCTGACTAGCCACCGGTATCATTACAGTAATGGATCGGG
CTAGTTTATTCCTCGATTCTATTCGCATGCACTTTACCATTACTTTACCA
TTGAACTAGTGATGTAAAAATACATTTTCTTTTATTTTTACAGATCAGCA
TGGCAGTAAAACATTCGTTACTCATACTCATTGTCTCTGGTGGATTAATT
GCTCTCATGGGATTTGTTTTGACAATGTTTGGGTTTGCATCTTCATGTAA
CAAGCCACCAAGATGTCTGAAGTCTGAAAACTCACGAATCCTTTCCTACA
AGATCTTCGGCCCTATGTTATTTTTCTTCGGCCTGGCCGCTTCTGGTGCC
GGTATCATACTTAAATGGCGACTGAAACCAAAACATCTAAGACTTGAGTA
CCGTGTTTCTAGTATCGAGGGAACTAACTTCACCGGTGACACAACCCTGG
AGACTGCAGAATCCCCTGTGAATGTAACACCAACCGAAGTAACATTCTCA
CCAAACTTCACCACCACAACGTCTATGCAGATTACTGAACCAGTCACAGT
GTCAAACGATGGTACGGATCACGCAGTTGGAGAGCCATCCACGGTGGAGA
AACAATATAACTCTCCTCCATGGGTGCCTTCTATGTTAGCTCCGCCAACG
TACGAAGAAGTGTGTAGTAAGCCGGCTGAAAAGGAGTGTAGTAGCGCAAA
ATTACAAGACCACTCCGAGCAGGAGGGTGTAGATGTGACTGATGCTGACG
TCAGTGATTTTGTGATCAATGAAGATGAATTGGAAGATGAAGTTTTTGAG
GCGGATGATACGGAGGAGAGTGAAGTGTATGAAATTCAAAATCTCATTCA
TGGCAAAAATTGCTCAGAAGCTTGAGATCATTCATTGATTTTTCCTGTTA
AACCGTCTTTCAAGACGGGGTTTTAACATTTTTCGACGGCTTTTAACGAC
ACTTTGAGGACTTTTAAAGGAACCATACTGGTGCAGGCGAGTTTAAAAAA
CAATGAAAAGTATTGACATACTGTTTGATGATTTGTTGCGGAGGAAGTAT
GATGTTTTATCAGTTAACAGTAGAATTTTGGAAGAGGTGGGCGGATAATT
TTTGATCCGTACACCCCAGTAATTGCTACAACAATGTTAGCTAGAGCGCG
ACATGGACGTGATTTATGCGGCTGGGCGAAACAAGAAACTTAAAAGTCCT
TTTTTTGTAAATTTATTTAGTGAATGAATTTTCTTACTCTTGTTTATATG
ATTAAATCTTTTAAAGAAGGAATTGTTAAAATATTGAAATATTTACACGT
AAAATTACATACACCTGCTTAAGATAAGTTACAAAAATATTAAAAAACAT
CAAGAAAAGGTTACTTTCTTCCAAACATATGTATAATATGTAGAACACGG
TAAGCCATAACAAAATTTCGGCAGCAAGTGATTTTTTTTCACTTTTCGCC
GACGAATCTCTACTGACGAGGAAAGTACAAATTTTGGATTTAAAAATTTT
GAATTTTTATATATCTTTACGACTCTCTCTCTCTCTCTCTCTCTGGAAAA
TATCAACCCTCTATTGATAGTAGTTCAGAATGTTCGAGGGATTGTTGTCT
TTTGTAAGCTGAAGTTATTGCCATCTCTGCGAAGCAACAAAGTAAACTTC
TTTGTCTAAGATTATCAGCATTCCATACAAAGTTATATCCAGTCTTTTTC
AAGATAAGGTACCACCTGATAAATTATTTTTACTGTTATAACTTCGGGAT
AATCATCTCAAAAGCTGCAACATATATGACCTTTTGGGTTTTTGGCATCA
TCCTTTTATCGGATGGTATGGAATCGTTATTCCGCAATTTTCCAGAAAAA
TCTAGTCCGAAGAAACCCATCTAATCTTTAAATTTCATGACCGTAATTCA
TGTGATTCGAACGGTCTACTTGTTACCATATAGCCTCTCTCTCTATGATT
TTTTAATCATTTCTGACTTGCGTTATTCCGAATACACCATCAATAATTCC
ATCAAGAGTTTCCAAAGCTGACGGTTCAATATTTTCTGGAGGTAACAAAA
AACCAATTTTAGTATTTCGATTTCTCAATTCAATGATGTAGGAGTTGGT

Coding sequence (CDS) from alignment at sc0000045:172994..176842-

>TCONS_00004543 ID=TCONS_00004543|Name=TCONS_00004543|organism=Clytia hemisphaerica|type=CDS|length=1626bp|location=Sequence derived from alignment at sc0000045:172994..176842- (Clytia hemisphaerica)
ATCAGCATGGCAGTAAAACATTCGTTACTCATACTCATTGTCTCTGGTGG
ATTAATTGCTCTCATGGGATTTGTTTTGACAATGTTTGGGTTTGCATCTT
CATGTAACAAGCCACCAAGATGTCTGAAGTCTGAAAACTCACGAATCCTT
TCCTACAAGATCTTCGGCCCTATGTTATTTTTCTTCGGCCTGGCCGCTTC
TGGTGCCGGTATCATACTTAAATGGCGACTGAAACCAAAACATCTAAGAC
TTGAGTACCGTGTTTCTAGTATCGAGGGAACTAACTTCACCGGTGACACA
ACCCTGGAGACTGCAGAATCCCCTGTGAATGTAACACCAACCGAAGTAAC
ATTCTCACCAAACTTCACCACCACAACGTCTATGCAGATTACTGAACCAG
TCACAGTGTCAAACGATGGTACGGATCACGCAGTTGGAGAGCCATCCACG
GTGGAGAAACAATATAACTCTCCTCCATGGGTGCCTTCTATGTTAGCTCC
GCCAACGTACGAAGAAGTGTGTAGTAAGCCGGCTGAAAAGGAGTGTAGTA
GCGCAAAATTACAAGACCACTCCGAGCAGGAGGGTGTAGATGTGACTGAT
GCTGACGTCAGTGATTTTGTGATCAATGAAGATGAATTGGAAGATGAAGT
TTTTGAGGCGGATGATACGGAGGAGAGTGAAGTGTATGAAATTCAAAATC
TCATTCATGGCAAAAATTGCTCAGAAGCTTGATGGAGTATTTTTATCAGT
TTTACCCTCAAGATGGCAATCGATTCTTGTTTTGTAGCTTACAATCTACC
GCCAAAGAAACAGATCAGCATGGCAGTAAAACATTCGTTACTCATACTCA
TTGTCTCTGGTGGATTAATTGCTCTCATGGGATTTGTTTTGACAATGTTT
GGGTTTGCATCTTCATGTAACAAGCCACCAAGATGTCTGAAGTCTGAAAA
CTCACGAATCCTTTCCTACAAGATCTTCGGCCCTATGTTATTTTTCTTCG
GCCTGGCCGCTTCTGGTGCCGGTATCATACTTAAATGGCGACTGAAACCA
AAACATCTAAGACTTGAGTACCGTGTTTCTAGTATCGAGGGAACTAACTT
CACCGGTGACACAACCCTGGAGACTGCAGAATCCCCTGTGAATGTAACAC
CAACCGAAGTAACATTCTCACCAAACTTCACCACCACAACGTCTATGCAG
ATTACTGAACCAGTCACAGTGTCAAACGATGGTACGGATCACGCAGTTGG
AGAGCCATCCACGGTGGAGAAACAATATAACTCTCCTCCATGGGTGCCTT
CTATGTTAGCTCCGCCAACGTACGAAGAAGTGTGTAGTAAGCCGGCTGAA
AAGGAGTGTAGTAGCGCAAAATTACAAGACCACTCCGAGCAGGAGGGTGT
AGATGTGACTGATGCTGACGTCAGTGATTTTGTGATCAATGAAGATGAAT
TGGAAGATGAAGTTTTTGAGGCGGATGATACGGAGGAGAGTGAAGTGTAT
GAAATTCAAAATCTCATTCATGGCAAAAATTGCTCAGAAGCTTGATGGAG
TATTTTTATCAGTTTTACCCTCAAGATGGCAATCGATTCTTGTTTTGTAG
CTTACAATCTACCGCCAAAGAAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002556XLOC_002556Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004543-proteinTCONS_00004543-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004543-exon-sc0000045-1575043694:176761..176842TCONS_00004543-exon-sc0000045-1575043694:176761..176842Clytia hemisphaericaexon
TCONS_00004543-exon-sc0000045-1575043694:172994..174949TCONS_00004543-exon-sc0000045-1575043694:172994..174949Clytia hemisphaericaexon
TCONS_00004543-exon-sc0000045-1510915933:176761..176842TCONS_00004543-exon-sc0000045-1510915933:176761..176842Clytia hemisphaericaexon
TCONS_00004543-exon-sc0000045-1510915933:172994..174949TCONS_00004543-exon-sc0000045-1510915933:172994..174949Clytia hemisphaericaexon
TCONS_00004543-exon-sc0000045-1491911889:176761..176842TCONS_00004543-exon-sc0000045-1491911889:176761..176842Clytia hemisphaericaexon
TCONS_00004543-exon-sc0000045-1491911889:172994..174949TCONS_00004543-exon-sc0000045-1491911889:172994..174949Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:172994..176842 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.109813	0	0.130792	0.00247398	0.074815	0.00558857	0	0	0.235825	0.353854	0	0	0	0	1.18393	1.53784	0	0	4.34584	4.64371	0.146413	1.65583	1.39308	0.0641499	0.0797928	0.0601687	0	0.0459845
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004543 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top